HEADER LYASE 04-SEP-23 8QFE TITLE CRYOGENIC CRYSTAL STRUCTURE OF THE PHOTOACTIVATED ADENYLATE CYCLASE TITLE 2 OAPAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAMILY 3 ADENYLATE CYCLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OSCILLATORIA ACUMINATA PCC 6304; SOURCE 3 ORGANISM_TAXID: 56110; SOURCE 4 GENE: OSCIL6304_3613; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOTORECEPTOR, BLUF, ADENYLATE CYCLASE, PAC, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHRETIEN,M.F.NAGEL,S.BOTHA,R.DE WIJN,L.BRINGS,K.DOERNER,H.HAN, AUTHOR 2 J.KOLIYADU,R.LETRUN,A.ROUND,T.SATO,C.SCHMIDT,R.SECAREANU,D.VON AUTHOR 3 STETTEN,M.VAKILI,A.WRONA,R.BEAN,A.MANCUSO,J.SCHULZ,A.PEARSON, AUTHOR 4 T.KOTTKE,K.LORENZEN,R.SCHUBERT REVDAT 3 13-MAR-24 8QFE 1 JRNL REVDAT 2 24-JAN-24 8QFE 1 JRNL REVDAT 1 01-NOV-23 8QFE 0 JRNL AUTH A.CHRETIEN,M.F.NAGEL,S.BOTHA,R.DE WIJN,L.BRINGS,K.DORNER, JRNL AUTH 2 H.HAN,J.C.P.KOLIYADU,R.LETRUN,A.ROUND,T.SATO,C.SCHMIDT, JRNL AUTH 3 R.C.SECAREANU,D.VON STETTEN,M.VAKILI,A.WRONA,R.BEAN, JRNL AUTH 4 A.MANCUSO,J.SCHULZ,A.R.PEARSON,T.KOTTKE,K.LORENZEN, JRNL AUTH 5 R.SCHUBERT JRNL TITL LIGHT-INDUCED TRP IN /MET OUT SWITCHING DURING BLUF DOMAIN JRNL TITL 2 ACTIVATION IN ATP-BOUND PHOTOACTIVATABLE ADENYLATE CYCLASE JRNL TITL 3 OAPAC. JRNL REF J.MOL.BIOL. V. 436 68439 2024 JRNL REFN ESSN 1089-8638 JRNL PMID 38185322 JRNL DOI 10.1016/J.JMB.2024.168439 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 64543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.2200 - 4.2600 1.00 2832 164 0.1756 0.2061 REMARK 3 2 4.2600 - 3.3800 1.00 2728 137 0.1420 0.1274 REMARK 3 3 3.3800 - 2.9600 1.00 2721 131 0.1593 0.1975 REMARK 3 4 2.9600 - 2.6900 1.00 2676 162 0.1585 0.1630 REMARK 3 5 2.6900 - 2.4900 1.00 2684 133 0.1492 0.1752 REMARK 3 6 2.4900 - 2.3500 1.00 2679 135 0.1549 0.1771 REMARK 3 7 2.3500 - 2.2300 1.00 2693 121 0.1458 0.1800 REMARK 3 8 2.2300 - 2.1300 1.00 2656 162 0.1459 0.1876 REMARK 3 9 2.1300 - 2.0500 1.00 2662 120 0.1664 0.1920 REMARK 3 10 2.0500 - 1.9800 1.00 2643 164 0.1733 0.2208 REMARK 3 11 1.9800 - 1.9200 1.00 2652 145 0.1600 0.1820 REMARK 3 12 1.9200 - 1.8600 1.00 2671 127 0.1584 0.2085 REMARK 3 13 1.8600 - 1.8100 1.00 2608 154 0.1729 0.2027 REMARK 3 14 1.8100 - 1.7700 1.00 2651 125 0.1761 0.2411 REMARK 3 15 1.7700 - 1.7300 1.00 2646 141 0.1899 0.2336 REMARK 3 16 1.7300 - 1.6900 1.00 2662 135 0.2069 0.2671 REMARK 3 17 1.6900 - 1.6600 1.00 2599 145 0.2055 0.2290 REMARK 3 18 1.6600 - 1.6300 1.00 2676 133 0.1997 0.2421 REMARK 3 19 1.6300 - 1.6000 1.00 2663 116 0.2032 0.2347 REMARK 3 20 1.6000 - 1.5700 1.00 2664 114 0.2149 0.2615 REMARK 3 21 1.5700 - 1.5500 1.00 2647 113 0.2263 0.2833 REMARK 3 22 1.5500 - 1.5200 1.00 2630 148 0.2418 0.3053 REMARK 3 23 1.5200 - 1.5000 1.00 2636 139 0.2603 0.2910 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.154 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.881 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3214 REMARK 3 ANGLE : 1.186 4415 REMARK 3 CHIRALITY : 0.069 499 REMARK 3 PLANARITY : 0.012 590 REMARK 3 DIHEDRAL : 5.682 477 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9990 -7.6570 -14.4981 REMARK 3 T TENSOR REMARK 3 T11: 0.3224 T22: 0.2598 REMARK 3 T33: 0.1557 T12: -0.0250 REMARK 3 T13: -0.0100 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.3816 L22: 1.3813 REMARK 3 L33: 1.3948 L12: -0.1381 REMARK 3 L13: 0.0649 L23: -0.9617 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: -0.0951 S13: -0.0521 REMARK 3 S21: -0.0508 S22: 0.0761 S23: 0.1029 REMARK 3 S31: 0.2195 S32: -0.0606 S33: -0.0810 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7618 28.8607 -14.1267 REMARK 3 T TENSOR REMARK 3 T11: 0.2196 T22: 0.2178 REMARK 3 T33: 0.1250 T12: 0.0052 REMARK 3 T13: 0.0108 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.4517 L22: 1.1104 REMARK 3 L33: 1.4385 L12: -0.0286 REMARK 3 L13: -0.0038 L23: 0.4931 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: -0.0333 S13: 0.1096 REMARK 3 S21: 0.0459 S22: -0.0120 S23: 0.0109 REMARK 3 S31: -0.1341 S32: -0.0495 S33: -0.0265 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 328 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8210 38.5367 -7.1005 REMARK 3 T TENSOR REMARK 3 T11: 0.9130 T22: 0.7536 REMARK 3 T33: 0.7594 T12: -0.1561 REMARK 3 T13: -0.1226 T23: -0.1242 REMARK 3 L TENSOR REMARK 3 L11: 0.6202 L22: 7.8907 REMARK 3 L33: 8.5914 L12: 0.0901 REMARK 3 L13: -2.3050 L23: -0.0902 REMARK 3 S TENSOR REMARK 3 S11: -0.0597 S12: -0.0089 S13: 1.0047 REMARK 3 S21: -0.2179 S22: 0.1485 S23: 0.0246 REMARK 3 S31: -1.6676 S32: -0.2838 S33: -0.0028 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QFE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292132809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8731 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64596 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 33.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% PROTEIN AT 10 MG/ML : 50 MM REMARK 280 TRIS/HCL PH 8.5, 50 MM SODIUM CHLORIDE, 5 MM ATP 50% REMARK 280 CRYSTALLIZATION BUFFER : 100 MM SPG BUFFER PH 7.0, 1.2 M REMARK 280 DISODIUM SUCCINATE, 100 MM GUANIDINE HYDROCHLORIDE, 5 MM REMARK 280 MAGNESIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.79750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.79750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.42800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.10100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.42800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.10100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.79750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.42800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.10100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.79750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.42800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.10100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -51.73100 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -51.73100 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -51.73100 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -51.73100 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -51.73100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 690 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 700 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 767 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 309 OG1 CG2 REMARK 470 ASP A 310 CG OD1 OD2 REMARK 470 SER A 311 OG REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 LEU A 313 CG CD1 CD2 REMARK 470 LYS A 314 CG CD CE NZ REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 SER A 317 OG REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 SER A 319 OG REMARK 470 ILE A 320 CG1 CG2 CD1 REMARK 470 GLU A 328 CG CD OE1 OE2 REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 LEU A 337 CG CD1 CD2 REMARK 470 ARG A 341 CG CD NE CZ NH1 NH2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASP A 310 REMARK 475 SER A 311 REMARK 475 GLU A 312 REMARK 475 LEU A 313 REMARK 475 LYS A 314 REMARK 475 GLY A 315 REMARK 475 LYS A 316 REMARK 475 SER A 317 REMARK 475 GLU A 318 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 319 N CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 543 O HOH A 624 1.63 REMARK 500 O HOH A 729 O HOH A 745 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 92 CA - CB - CG ANGL. DEV. = -11.2 DEGREES REMARK 500 ASP A 264 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 310 -59.37 174.83 REMARK 500 GLU A 312 38.92 -99.03 REMARK 500 SER A 317 -60.36 -102.58 REMARK 500 SER A 319 -157.83 55.06 REMARK 500 ILE A 320 132.79 -173.20 REMARK 500 LEU A 337 -59.87 81.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 239 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 827 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 828 DISTANCE = 5.95 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 156 OD2 REMARK 620 2 ILE A 157 O 101.3 REMARK 620 3 ASP A 200 OD2 95.9 89.2 REMARK 620 4 HOH A 543 O 89.2 167.7 83.2 REMARK 620 5 HOH A 745 O 113.8 96.2 147.9 85.3 REMARK 620 N 1 2 3 4 DBREF 8QFE A 1 350 UNP K9TLZ5 K9TLZ5_9CYAN 1 350 SEQRES 1 A 350 MET LYS ARG LEU THR TYR ILE SER LYS PHE SER ARG PRO SEQRES 2 A 350 LEU SER GLY ASP GLU ILE GLU ALA ILE GLY ARG ILE SER SEQRES 3 A 350 SER GLN LYS ASN GLN GLN ALA ASN VAL THR GLY VAL LEU SEQRES 4 A 350 LEU CYS LEU ASP GLY ILE PHE PHE GLN ILE LEU GLU GLY SEQRES 5 A 350 GLU ALA GLU LYS ILE ASP ARG ILE TYR GLU ARG ILE LEU SEQRES 6 A 350 ALA ASP GLU ARG HIS THR ASP ILE LEU CYS LEU LYS SER SEQRES 7 A 350 GLU VAL GLU VAL GLN GLU ARG MET PHE PRO ASP TRP SER SEQRES 8 A 350 MET GLN THR ILE ASN LEU ASP GLU ASN THR ASP PHE LEU SEQRES 9 A 350 ILE ARG PRO ILE LYS VAL LEU LEU GLN THR LEU THR GLU SEQRES 10 A 350 SER HIS ARG ILE LEU GLU LYS TYR THR GLN PRO SER ILE SEQRES 11 A 350 PHE LYS ILE ILE SER GLN GLY THR ASN PRO LEU ASN ILE SEQRES 12 A 350 ARG PRO LYS ALA VAL GLU LYS ILE VAL PHE PHE SER ASP SEQRES 13 A 350 ILE VAL SER PHE SER THR PHE ALA GLU LYS LEU PRO VAL SEQRES 14 A 350 GLU GLU VAL VAL SER VAL VAL ASN SER TYR PHE SER VAL SEQRES 15 A 350 CYS THR ALA ILE ILE THR ARG GLN GLY GLY GLU VAL THR SEQRES 16 A 350 LYS PHE ILE GLY ASP CYS VAL MET ALA TYR PHE ASP GLY SEQRES 17 A 350 ASP CYS ALA ASP GLN ALA ILE GLN ALA SER LEU ASP ILE SEQRES 18 A 350 LEU MET GLU LEU GLU ILE LEU ARG ASN SER ALA PRO GLU SEQRES 19 A 350 GLY SER PRO LEU ARG VAL LEU TYR SER GLY ILE GLY LEU SEQRES 20 A 350 ALA LYS GLY LYS VAL ILE GLU GLY ASN ILE GLY SER GLU SEQRES 21 A 350 LEU LYS ARG ASP TYR THR ILE LEU GLY ASP ALA VAL ASN SEQRES 22 A 350 VAL ALA ALA ARG LEU GLU ALA LEU THR ARG GLN LEU SER SEQRES 23 A 350 GLN ALA LEU VAL PHE SER SER GLU VAL LYS ASN SER ALA SEQRES 24 A 350 THR LYS SER TRP ASN PHE ILE TRP LEU THR ASP SER GLU SEQRES 25 A 350 LEU LYS GLY LYS SER GLU SER ILE ASP ILE TYR SER ILE SEQRES 26 A 350 ASP ASN GLU MET THR ARG LYS SER SER GLY GLY LEU GLU SEQRES 27 A 350 ILE ALA ARG ASN ILE GLY HIS TYR LEU GLU ARG VAL HET FMN A 401 49 HET MG A 402 1 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM MG MAGNESIUM ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 MG MG 2+ FORMUL 4 HOH *328(H2 O) HELIX 1 AA1 SER A 15 ASN A 34 1 20 HELIX 2 AA2 GLU A 53 ALA A 66 1 14 HELIX 3 AA3 ASP A 98 ASN A 100 5 3 HELIX 4 AA4 LEU A 104 GLU A 123 1 20 HELIX 5 AA5 LYS A 124 THR A 126 5 3 HELIX 6 AA6 GLN A 127 GLN A 136 1 10 HELIX 7 AA7 ASN A 139 ILE A 143 5 5 HELIX 8 AA8 SER A 159 LEU A 167 1 9 HELIX 9 AA9 PRO A 168 GLN A 190 1 23 HELIX 10 AB1 CYS A 210 ALA A 232 1 23 HELIX 11 AB2 SER A 236 LEU A 241 5 6 HELIX 12 AB3 GLY A 269 THR A 282 1 14 HELIX 13 AB4 ARG A 283 LEU A 285 5 3 HELIX 14 AB5 SER A 293 ALA A 299 1 7 HELIX 15 AB6 ASN A 327 LYS A 332 1 6 HELIX 16 AB7 LEU A 337 GLU A 348 1 12 SHEET 1 AA1 5 HIS A 70 GLU A 79 0 SHEET 2 AA1 5 LYS A 2 PHE A 10 -1 N ARG A 3 O GLU A 79 SHEET 3 AA1 5 ILE A 45 GLY A 52 -1 O GLY A 52 N LYS A 2 SHEET 4 AA1 5 THR A 36 LEU A 42 -1 N LEU A 40 O PHE A 47 SHEET 5 AA1 5 GLN A 93 ASN A 96 1 O ILE A 95 N LEU A 39 SHEET 1 AA2 5 GLU A 193 ILE A 198 0 SHEET 2 AA2 5 CYS A 201 ASP A 207 -1 O TYR A 205 N GLU A 193 SHEET 3 AA2 5 LYS A 146 ILE A 157 -1 N SER A 155 O VAL A 202 SHEET 4 AA2 5 SER A 243 GLY A 258 -1 O ALA A 248 N VAL A 152 SHEET 5 AA2 5 ARG A 263 LEU A 268 -1 O LEU A 268 N ILE A 253 SHEET 1 AA3 7 GLU A 193 ILE A 198 0 SHEET 2 AA3 7 CYS A 201 ASP A 207 -1 O TYR A 205 N GLU A 193 SHEET 3 AA3 7 LYS A 146 ILE A 157 -1 N SER A 155 O VAL A 202 SHEET 4 AA3 7 SER A 243 GLY A 258 -1 O ALA A 248 N VAL A 152 SHEET 5 AA3 7 LEU A 289 SER A 292 1 O VAL A 290 N ILE A 245 SHEET 6 AA3 7 ILE A 322 ILE A 325 -1 O TYR A 323 N PHE A 291 SHEET 7 AA3 7 PHE A 305 TRP A 307 -1 N ILE A 306 O SER A 324 LINK OD2 ASP A 156 MG MG A 402 1555 1555 2.47 LINK O ILE A 157 MG MG A 402 1555 1555 2.31 LINK OD2 ASP A 200 MG MG A 402 1555 1555 2.40 LINK MG MG A 402 O HOH A 543 1555 1555 2.36 LINK MG MG A 402 O HOH A 745 1555 1555 2.32 CRYST1 52.856 146.202 103.595 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018919 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006840 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009653 0.00000