HEADER LYASE 11-SEP-23 8QFF TITLE CRYOGENIC CRYSTAL STRUCTURE OF THE PHOTOACTIVATED ADENYLATE CYCLASE TITLE 2 OAPAC WITH ATP BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAMILY 3 ADENYLATE CYCLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OSCILLATORIA ACUMINATA PCC 6304; SOURCE 3 ORGANISM_TAXID: 56110; SOURCE 4 GENE: OSCIL6304_3613; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOTORECEPTOR, BLUF, ADENYLATE CYCLASE, PAC, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHRETIEN,M.F.NAGEL,S.BOTHA,R.DE WIJN,L.BRINGS,K.DOERNER,H.HAN, AUTHOR 2 J.C.P.KOLIYADU,R.LETRUN,A.ROUND,T.SATO,C.SCHMIDT,R.SECAREANU,D.VON AUTHOR 3 STETTEN,M.VAKILI,A.WRONA,R.BEAN,A.MANCUSO,J.SCHULZ,A.R.PEARSON, AUTHOR 4 T.KOTTKE,K.LORENZEN,R.SCHUBERT REVDAT 3 13-MAR-24 8QFF 1 JRNL REVDAT 2 24-JAN-24 8QFF 1 JRNL REVDAT 1 01-NOV-23 8QFF 0 JRNL AUTH A.CHRETIEN,M.F.NAGEL,S.BOTHA,R.DE WIJN,L.BRINGS,K.DORNER, JRNL AUTH 2 H.HAN,J.C.P.KOLIYADU,R.LETRUN,A.ROUND,T.SATO,C.SCHMIDT, JRNL AUTH 3 R.C.SECAREANU,D.VON STETTEN,M.VAKILI,A.WRONA,R.BEAN, JRNL AUTH 4 A.MANCUSO,J.SCHULZ,A.R.PEARSON,T.KOTTKE,K.LORENZEN, JRNL AUTH 5 R.SCHUBERT JRNL TITL LIGHT-INDUCED TRP IN /MET OUT SWITCHING DURING BLUF DOMAIN JRNL TITL 2 ACTIVATION IN ATP-BOUND PHOTOACTIVATABLE ADENYLATE CYCLASE JRNL TITL 3 OAPAC. JRNL REF J.MOL.BIOL. V. 436 68439 2024 JRNL REFN ESSN 1089-8638 JRNL PMID 38185322 JRNL DOI 10.1016/J.JMB.2024.168439 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 1175 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.0400 - 4.2000 1.00 3111 153 0.1582 0.1799 REMARK 3 2 4.2000 - 3.3300 1.00 2992 159 0.1579 0.1877 REMARK 3 3 3.3300 - 2.9100 1.00 2947 155 0.1928 0.2398 REMARK 3 4 2.9100 - 2.6500 1.00 2977 152 0.2052 0.2067 REMARK 3 5 2.6500 - 2.4600 1.00 2927 143 0.2223 0.2684 REMARK 3 6 2.4600 - 2.3100 1.00 2939 140 0.2367 0.3002 REMARK 3 7 2.3100 - 2.2000 1.00 2921 137 0.2484 0.3104 REMARK 3 8 2.2000 - 2.1000 1.00 2935 136 0.2682 0.3234 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.263 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.078 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3127 REMARK 3 ANGLE : 0.994 4302 REMARK 3 CHIRALITY : 0.057 496 REMARK 3 PLANARITY : 0.008 555 REMARK 3 DIHEDRAL : 7.443 464 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:40) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8384 -13.0946 -8.0563 REMARK 3 T TENSOR REMARK 3 T11: 0.3318 T22: 0.2567 REMARK 3 T33: 0.1808 T12: -0.0185 REMARK 3 T13: -0.0056 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 5.9170 L22: 5.0060 REMARK 3 L33: 5.1927 L12: 0.9808 REMARK 3 L13: -0.8583 L23: -3.1377 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: -0.3151 S13: -0.2138 REMARK 3 S21: -0.1606 S22: 0.0799 S23: -0.0460 REMARK 3 S31: 0.2124 S32: -0.0333 S33: -0.0995 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 41:101) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9531 -9.9696 -11.5796 REMARK 3 T TENSOR REMARK 3 T11: 0.3746 T22: 0.2799 REMARK 3 T33: 0.2311 T12: -0.0616 REMARK 3 T13: -0.0319 T23: 0.0750 REMARK 3 L TENSOR REMARK 3 L11: 7.1425 L22: 4.3759 REMARK 3 L33: 4.5564 L12: 0.2142 REMARK 3 L13: -0.4045 L23: -0.6621 REMARK 3 S TENSOR REMARK 3 S11: -0.0409 S12: -0.3076 S13: 0.0153 REMARK 3 S21: -0.2354 S22: 0.1220 S23: 0.4188 REMARK 3 S31: 0.3253 S32: -0.4591 S33: -0.1024 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 102:148) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7472 0.2322 -24.9811 REMARK 3 T TENSOR REMARK 3 T11: 0.4073 T22: 0.3075 REMARK 3 T33: 0.2547 T12: -0.0198 REMARK 3 T13: -0.0081 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 1.9915 L22: 3.6814 REMARK 3 L33: 1.3883 L12: -2.2537 REMARK 3 L13: 0.3963 L23: -0.7979 REMARK 3 S TENSOR REMARK 3 S11: 0.1052 S12: -0.1476 S13: -0.2266 REMARK 3 S21: -0.2566 S22: -0.0090 S23: 0.2244 REMARK 3 S31: 0.3790 S32: 0.0045 S33: -0.0627 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 149:247) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0450 26.1568 -11.5165 REMARK 3 T TENSOR REMARK 3 T11: 0.2384 T22: 0.1836 REMARK 3 T33: 0.1619 T12: 0.0048 REMARK 3 T13: 0.0093 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 6.3709 L22: 1.6998 REMARK 3 L33: 2.0309 L12: 0.3332 REMARK 3 L13: 0.1390 L23: 0.2922 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: -0.0159 S13: 0.0763 REMARK 3 S21: 0.1015 S22: 0.0022 S23: 0.0116 REMARK 3 S31: 0.0087 S32: -0.0288 S33: -0.0209 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 248:328) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5517 32.9270 -16.4676 REMARK 3 T TENSOR REMARK 3 T11: 0.2064 T22: 0.2983 REMARK 3 T33: 0.2730 T12: 0.0536 REMARK 3 T13: -0.0010 T23: 0.0331 REMARK 3 L TENSOR REMARK 3 L11: 0.5786 L22: 3.3292 REMARK 3 L33: 6.1305 L12: -0.1174 REMARK 3 L13: -0.7516 L23: 2.8327 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: 0.0317 S13: 0.1180 REMARK 3 S21: -0.2213 S22: -0.0915 S23: 0.0423 REMARK 3 S31: -0.4120 S32: -0.3229 S33: 0.0619 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 329:338) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3182 40.8658 -3.0661 REMARK 3 T TENSOR REMARK 3 T11: 1.1338 T22: 0.7465 REMARK 3 T33: 0.9290 T12: 0.1320 REMARK 3 T13: -0.2392 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 7.0689 L22: 6.6534 REMARK 3 L33: 6.3295 L12: 1.0379 REMARK 3 L13: 2.0138 L23: 3.8820 REMARK 3 S TENSOR REMARK 3 S11: -1.4609 S12: -0.1222 S13: 1.4221 REMARK 3 S21: 0.9510 S22: 0.5179 S23: -0.2045 REMARK 3 S31: -0.9425 S32: 0.2491 S33: 0.9686 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 339:350) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4386 38.1813 -10.0930 REMARK 3 T TENSOR REMARK 3 T11: 0.7174 T22: 0.5730 REMARK 3 T33: 0.8527 T12: -0.1472 REMARK 3 T13: -0.0518 T23: -0.1113 REMARK 3 L TENSOR REMARK 3 L11: 6.3759 L22: 8.3739 REMARK 3 L33: 8.1330 L12: -5.1359 REMARK 3 L13: 3.3184 L23: -3.0657 REMARK 3 S TENSOR REMARK 3 S11: -0.6463 S12: -0.1831 S13: 1.8202 REMARK 3 S21: 0.2484 S22: 0.2707 S23: -1.5473 REMARK 3 S31: -1.2948 S32: 0.8006 S33: 0.3292 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QFF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292132784. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8731 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24956 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 60.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% PROTEIN AT 10 MG/ML : 50 MM REMARK 280 TRIS/HCL PH 8.5, 50 MM SODIUM CHLORIDE, 5 MM ATP 50% REMARK 280 CRYSTALLIZATION BUFFER : 100 MM SPG BUFFER PH 7.0, 1.2 M REMARK 280 DISODIUM SUCCINATE, 100 MM GUANIDINE HYDROCHLORIDE, 5 MM REMARK 280 MAGNESIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.46000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.46000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.22750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.21750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.22750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.21750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.46000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.22750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.21750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.46000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.22750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.21750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -52.46000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 549 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 624 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 310 CG OD1 OD2 REMARK 470 SER A 311 OG REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 LEU A 313 CG CD1 CD2 REMARK 470 LYS A 314 CG CD CE NZ REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 SER A 317 OG REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 SER A 319 OG REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER A 311 REMARK 475 GLU A 312 REMARK 475 LEU A 313 REMARK 475 LYS A 314 REMARK 475 GLY A 315 REMARK 475 LYS A 316 REMARK 475 SER A 317 REMARK 475 GLU A 318 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 326 CA CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 502 O HOH A 513 1.47 REMARK 500 OD2 ASP A 156 O HOH A 502 2.02 REMARK 500 OD1 ASP A 17 O HOH A 504 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 92 104.24 -163.52 REMARK 500 THR A 101 26.87 -143.64 REMARK 500 THR A 101 27.78 -143.64 REMARK 500 ASP A 310 30.82 -150.80 REMARK 500 SER A 311 98.62 -67.96 REMARK 500 SER A 319 151.75 63.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 687 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 688 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 689 DISTANCE = 6.41 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 156 OD1 REMARK 620 2 ASP A 156 OD2 49.2 REMARK 620 3 ILE A 157 O 83.1 102.6 REMARK 620 4 ASP A 200 OD2 65.7 112.1 85.1 REMARK 620 5 ATP A 402 O1G 110.8 66.5 89.0 173.4 REMARK 620 6 ATP A 402 O2B 157.4 153.4 87.8 93.0 89.6 REMARK 620 7 ATP A 402 O2A 103.5 86.5 170.9 91.8 94.5 83.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 200 OD1 REMARK 620 2 ATP A 402 O2A 88.3 REMARK 620 3 HOH A 575 O 164.5 97.5 REMARK 620 4 HOH A 611 O 87.9 149.2 79.8 REMARK 620 N 1 2 3 DBREF 8QFF A 1 350 UNP K9TLZ5 K9TLZ5_9CYAN 1 350 SEQRES 1 A 350 MET LYS ARG LEU THR TYR ILE SER LYS PHE SER ARG PRO SEQRES 2 A 350 LEU SER GLY ASP GLU ILE GLU ALA ILE GLY ARG ILE SER SEQRES 3 A 350 SER GLN LYS ASN GLN GLN ALA ASN VAL THR GLY VAL LEU SEQRES 4 A 350 LEU CYS LEU ASP GLY ILE PHE PHE GLN ILE LEU GLU GLY SEQRES 5 A 350 GLU ALA GLU LYS ILE ASP ARG ILE TYR GLU ARG ILE LEU SEQRES 6 A 350 ALA ASP GLU ARG HIS THR ASP ILE LEU CYS LEU LYS SER SEQRES 7 A 350 GLU VAL GLU VAL GLN GLU ARG MET PHE PRO ASP TRP SER SEQRES 8 A 350 MET GLN THR ILE ASN LEU ASP GLU ASN THR ASP PHE LEU SEQRES 9 A 350 ILE ARG PRO ILE LYS VAL LEU LEU GLN THR LEU THR GLU SEQRES 10 A 350 SER HIS ARG ILE LEU GLU LYS TYR THR GLN PRO SER ILE SEQRES 11 A 350 PHE LYS ILE ILE SER GLN GLY THR ASN PRO LEU ASN ILE SEQRES 12 A 350 ARG PRO LYS ALA VAL GLU LYS ILE VAL PHE PHE SER ASP SEQRES 13 A 350 ILE VAL SER PHE SER THR PHE ALA GLU LYS LEU PRO VAL SEQRES 14 A 350 GLU GLU VAL VAL SER VAL VAL ASN SER TYR PHE SER VAL SEQRES 15 A 350 CYS THR ALA ILE ILE THR ARG GLN GLY GLY GLU VAL THR SEQRES 16 A 350 LYS PHE ILE GLY ASP CYS VAL MET ALA TYR PHE ASP GLY SEQRES 17 A 350 ASP CYS ALA ASP GLN ALA ILE GLN ALA SER LEU ASP ILE SEQRES 18 A 350 LEU MET GLU LEU GLU ILE LEU ARG ASN SER ALA PRO GLU SEQRES 19 A 350 GLY SER PRO LEU ARG VAL LEU TYR SER GLY ILE GLY LEU SEQRES 20 A 350 ALA LYS GLY LYS VAL ILE GLU GLY ASN ILE GLY SER GLU SEQRES 21 A 350 LEU LYS ARG ASP TYR THR ILE LEU GLY ASP ALA VAL ASN SEQRES 22 A 350 VAL ALA ALA ARG LEU GLU ALA LEU THR ARG GLN LEU SER SEQRES 23 A 350 GLN ALA LEU VAL PHE SER SER GLU VAL LYS ASN SER ALA SEQRES 24 A 350 THR LYS SER TRP ASN PHE ILE TRP LEU THR ASP SER GLU SEQRES 25 A 350 LEU LYS GLY LYS SER GLU SER ILE ASP ILE TYR SER ILE SEQRES 26 A 350 ASP ASN GLU MET THR ARG LYS SER SER GLY GLY LEU GLU SEQRES 27 A 350 ILE ALA ARG ASN ILE GLY HIS TYR LEU GLU ARG VAL HET FMN A 401 49 HET ATP A 402 42 HET MG A 403 1 HET MG A 404 1 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *189(H2 O) HELIX 1 AA1 SER A 15 ALA A 33 1 19 HELIX 2 AA2 GLU A 53 ALA A 66 1 14 HELIX 3 AA3 ASP A 98 ASN A 100 5 3 HELIX 4 AA4 LEU A 104 GLU A 123 1 20 HELIX 5 AA5 LYS A 124 THR A 126 5 3 HELIX 6 AA6 GLN A 127 GLN A 136 1 10 HELIX 7 AA7 ASN A 139 ILE A 143 5 5 HELIX 8 AA8 SER A 159 LEU A 167 1 9 HELIX 9 AA9 PRO A 168 GLN A 190 1 23 HELIX 10 AB1 CYS A 210 ALA A 232 1 23 HELIX 11 AB2 SER A 236 LEU A 241 5 6 HELIX 12 AB3 GLY A 269 THR A 282 1 14 HELIX 13 AB4 ARG A 283 LEU A 285 5 3 HELIX 14 AB5 SER A 293 ALA A 299 1 7 HELIX 15 AB6 ASN A 327 LYS A 332 1 6 HELIX 16 AB7 GLY A 335 GLU A 348 1 14 SHEET 1 AA1 5 HIS A 70 VAL A 80 0 SHEET 2 AA1 5 LYS A 2 PHE A 10 -1 N ARG A 3 O GLU A 79 SHEET 3 AA1 5 ILE A 45 GLY A 52 -1 O PHE A 46 N SER A 8 SHEET 4 AA1 5 THR A 36 LEU A 42 -1 N LEU A 40 O PHE A 47 SHEET 5 AA1 5 GLN A 93 ASN A 96 1 O GLN A 93 N LEU A 39 SHEET 1 AA2 5 GLU A 193 ILE A 198 0 SHEET 2 AA2 5 CYS A 201 ASP A 207 -1 O MET A 203 N LYS A 196 SHEET 3 AA2 5 LYS A 146 ILE A 157 -1 N PHE A 153 O ALA A 204 SHEET 4 AA2 5 SER A 243 GLY A 258 -1 O VAL A 252 N VAL A 148 SHEET 5 AA2 5 ARG A 263 LEU A 268 -1 O LEU A 268 N ILE A 253 SHEET 1 AA3 7 GLU A 193 ILE A 198 0 SHEET 2 AA3 7 CYS A 201 ASP A 207 -1 O MET A 203 N LYS A 196 SHEET 3 AA3 7 LYS A 146 ILE A 157 -1 N PHE A 153 O ALA A 204 SHEET 4 AA3 7 SER A 243 GLY A 258 -1 O VAL A 252 N VAL A 148 SHEET 5 AA3 7 LEU A 289 SER A 292 1 O VAL A 290 N ILE A 245 SHEET 6 AA3 7 ILE A 322 ILE A 325 -1 O TYR A 323 N PHE A 291 SHEET 7 AA3 7 PHE A 305 LEU A 308 -1 N ILE A 306 O SER A 324 LINK OD1 ASP A 156 MG MG A 403 1555 1555 2.06 LINK OD2 ASP A 156 MG MG A 403 1555 1555 2.85 LINK O ILE A 157 MG MG A 403 1555 1555 2.28 LINK OD2 ASP A 200 MG MG A 403 1555 1555 2.44 LINK OD1 ASP A 200 MG MG A 404 1555 1555 2.36 LINK O1G ATP A 402 MG MG A 403 1555 1555 2.28 LINK O2B ATP A 402 MG MG A 403 1555 1555 2.10 LINK O2A ATP A 402 MG MG A 403 1555 1555 2.09 LINK O2A ATP A 402 MG MG A 404 1555 1555 2.12 LINK MG MG A 404 O HOH A 575 1555 1555 2.49 LINK MG MG A 404 O HOH A 611 1555 1555 2.24 CRYST1 54.455 146.435 104.920 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018364 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009531 0.00000