HEADER LYASE 04-SEP-23 8QFI TITLE ROOM TEMPERATURE CRYSTAL STRUCTURE OF THE PHOTOACTIVATED ADENYLATE TITLE 2 CYCLASE OAPAC AFTER BLUE LIGHT EXCITATION AT 1.8 US DELAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAMILY 3 ADENYLATE CYCLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OSCILLATORIA ACUMINATA PCC 6304; SOURCE 3 ORGANISM_TAXID: 56110; SOURCE 4 GENE: OSCIL6304_3613; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOTORECEPTOR, BLUF, ADENYLATE CYCLASE, PAC, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHRETIEN,M.F.NAGEL,S.BOTHA,R.DE WIJN,L.BRINGS,K.DOERNER,H.HAN, AUTHOR 2 J.C.P.KOLIYADU,R.LETRUN,T.SATO,A.ROUND,C.SCHMIDT,R.SECAREANU,D.VON AUTHOR 3 STETTEN,M.VAKILI,A.WRONA,R.BEAN,A.MANCUSO,J.SCHULZ,A.R.PEARSON, AUTHOR 4 T.KOTTKE,K.LORENZEN,R.SCHUBERT REVDAT 3 13-MAR-24 8QFI 1 JRNL REVDAT 2 24-JAN-24 8QFI 1 JRNL REVDAT 1 01-NOV-23 8QFI 0 JRNL AUTH A.CHRETIEN,M.F.NAGEL,S.BOTHA,R.DE WIJN,L.BRINGS,K.DORNER, JRNL AUTH 2 H.HAN,J.C.P.KOLIYADU,R.LETRUN,A.ROUND,T.SATO,C.SCHMIDT, JRNL AUTH 3 R.C.SECAREANU,D.VON STETTEN,M.VAKILI,A.WRONA,R.BEAN, JRNL AUTH 4 A.MANCUSO,J.SCHULZ,A.R.PEARSON,T.KOTTKE,K.LORENZEN, JRNL AUTH 5 R.SCHUBERT JRNL TITL LIGHT-INDUCED TRP IN /MET OUT SWITCHING DURING BLUF DOMAIN JRNL TITL 2 ACTIVATION IN ATP-BOUND PHOTOACTIVATABLE ADENYLATE CYCLASE JRNL TITL 3 OAPAC. JRNL REF J.MOL.BIOL. V. 436 68439 2024 JRNL REFN ESSN 1089-8638 JRNL PMID 38185322 JRNL DOI 10.1016/J.JMB.2024.168439 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.308 REMARK 3 R VALUE (WORKING SET) : 0.306 REMARK 3 FREE R VALUE : 0.339 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.6300 - 4.3500 1.00 2797 148 0.2544 0.2446 REMARK 3 2 4.3400 - 3.4500 1.00 2684 141 0.2208 0.2610 REMARK 3 3 3.4500 - 3.0200 1.00 2658 141 0.2553 0.2957 REMARK 3 4 3.0200 - 2.7400 1.00 2655 139 0.3141 0.3962 REMARK 3 5 2.7400 - 2.5400 1.00 2640 139 0.3320 0.3880 REMARK 3 6 2.5400 - 2.3900 1.00 2617 137 0.3698 0.4240 REMARK 3 7 2.3900 - 2.2700 1.00 2612 138 0.4280 0.4718 REMARK 3 8 2.2700 - 2.1700 1.00 2607 138 0.4713 0.5027 REMARK 3 9 2.1700 - 2.0900 1.00 2611 137 0.4597 0.4850 REMARK 3 10 2.0900 - 2.0200 1.00 2605 136 0.4795 0.5234 REMARK 3 11 2.0200 - 1.9600 1.00 2592 137 0.4565 0.4658 REMARK 3 12 1.9600 - 1.9000 1.00 2609 137 0.4291 0.4584 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.381 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 42.216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2952 REMARK 3 ANGLE : 0.887 4059 REMARK 3 CHIRALITY : 0.064 465 REMARK 3 PLANARITY : 0.008 516 REMARK 3 DIHEDRAL : 6.862 431 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QFI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292132805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : SPB/SFX REMARK 200 X-RAY GENERATOR MODEL : EUROPEAN XFEL BEAMLINE SPB/SFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : AGIPD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL 0.10.1 REMARK 200 DATA SCALING SOFTWARE : XTRAPOL8 1.2.0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36898 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.815 REMARK 200 RESOLUTION RANGE LOW (A) : 31.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 711.0 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : 428.0 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45% PROTEIN AT 12 MG/ML : 50 MM REMARK 280 TRIS/HCL PH 8.5, 50 MM SODIUM CHLORIDE, 5 MM ATP 45% REMARK 280 CRYSTALLIZATION BUFFER : 100 MM SPG BUFFER PH 7.0, 1.2 M REMARK 280 DISODIUM SUCCINATE, 100 MM GUANIDINE HYDROCHLORIDE, 5 MM REMARK 280 MAGNESIUM CHLORIDE 10% SEEDS FROM CRUSHED MACROCRYSTALS, BATCH REMARK 280 MODE, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.15000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.90000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.15000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.90000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.65000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.15000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.90000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.65000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.15000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.90000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -52.65000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 613 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 331 REMARK 465 LYS A 332 REMARK 465 SER A 333 REMARK 465 SER A 334 REMARK 465 GLY A 335 REMARK 465 GLY A 336 REMARK 465 LEU A 337 REMARK 465 GLU A 338 REMARK 465 ILE A 339 REMARK 465 ALA A 340 REMARK 465 ARG A 341 REMARK 465 ASN A 342 REMARK 465 ILE A 343 REMARK 465 GLY A 344 REMARK 465 HIS A 345 REMARK 465 TYR A 346 REMARK 465 LEU A 347 REMARK 465 GLU A 348 REMARK 465 ARG A 349 REMARK 465 VAL A 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 261 CG CD1 CD2 REMARK 470 ASP A 310 CG OD1 OD2 REMARK 470 SER A 311 OG REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 LEU A 313 CG CD1 CD2 REMARK 470 LYS A 314 CG CD CE NZ REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 SER A 317 OG REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 SER A 319 OG REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASP A 310 REMARK 475 SER A 311 REMARK 475 GLU A 312 REMARK 475 LEU A 313 REMARK 475 LYS A 314 REMARK 475 GLY A 315 REMARK 475 LYS A 316 REMARK 475 SER A 317 REMARK 475 GLU A 318 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 203 CA CB CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 325 HG1 THR A 330 1.57 REMARK 500 O HOH A 560 O HOH A 585 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLY A 269 O2' ATP A 402 3554 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 42 116.07 -162.53 REMARK 500 ASP A 43 63.10 38.27 REMARK 500 MET A 92 109.10 -160.88 REMARK 500 THR A 309 46.87 -98.99 REMARK 500 SER A 311 56.36 -98.05 REMARK 500 GLU A 312 39.26 -91.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 616 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 617 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 618 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A 619 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A 620 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH A 621 DISTANCE = 7.33 ANGSTROMS REMARK 525 HOH A 622 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH A 623 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH A 624 DISTANCE = 7.74 ANGSTROMS REMARK 525 HOH A 625 DISTANCE = 7.74 ANGSTROMS REMARK 525 HOH A 626 DISTANCE = 7.90 ANGSTROMS REMARK 525 HOH A 627 DISTANCE = 7.91 ANGSTROMS REMARK 525 HOH A 628 DISTANCE = 8.03 ANGSTROMS REMARK 525 HOH A 629 DISTANCE = 8.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 156 OD1 REMARK 620 2 ILE A 157 O 77.1 REMARK 620 3 ASP A 200 OD2 92.8 91.2 REMARK 620 4 ATP A 402 O2G 86.5 87.3 178.4 REMARK 620 5 ATP A 402 O2G 92.0 85.0 173.0 6.5 REMARK 620 6 ATP A 402 O1B 172.0 94.9 87.1 93.4 87.4 REMARK 620 7 ATP A 402 O1B 170.2 102.7 97.0 83.7 78.2 12.8 REMARK 620 8 ATP A 402 O2A 98.9 171.7 96.3 85.2 87.9 89.0 79.9 REMARK 620 9 ATP A 402 O2A 102.5 163.1 105.7 75.9 78.1 85.2 74.7 10.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 156 OD2 REMARK 620 2 ASP A 200 OD1 89.6 REMARK 620 3 ATP A 402 O2A 93.3 79.5 REMARK 620 4 ATP A 402 O2A 98.6 91.7 13.2 REMARK 620 5 HOH A 521 O 111.9 104.3 154.3 145.3 REMARK 620 6 HOH A 550 O 87.8 164.0 84.9 73.2 91.3 REMARK 620 N 1 2 3 4 5 DBREF 8QFI A 1 350 UNP K9TLZ5 K9TLZ5_9CYAN 1 350 SEQRES 1 A 350 MET LYS ARG LEU THR TYR ILE SER LYS PHE SER ARG PRO SEQRES 2 A 350 LEU SER GLY ASP GLU ILE GLU ALA ILE GLY ARG ILE SER SEQRES 3 A 350 SER GLN LYS ASN GLN GLN ALA ASN VAL THR GLY VAL LEU SEQRES 4 A 350 LEU CYS LEU ASP GLY ILE PHE PHE GLN ILE LEU GLU GLY SEQRES 5 A 350 GLU ALA GLU LYS ILE ASP ARG ILE TYR GLU ARG ILE LEU SEQRES 6 A 350 ALA ASP GLU ARG HIS THR ASP ILE LEU CYS LEU LYS SER SEQRES 7 A 350 GLU VAL GLU VAL GLN GLU ARG MET PHE PRO ASP TRP SER SEQRES 8 A 350 MET GLN THR ILE ASN LEU ASP GLU ASN THR ASP PHE LEU SEQRES 9 A 350 ILE ARG PRO ILE LYS VAL LEU LEU GLN THR LEU THR GLU SEQRES 10 A 350 SER HIS ARG ILE LEU GLU LYS TYR THR GLN PRO SER ILE SEQRES 11 A 350 PHE LYS ILE ILE SER GLN GLY THR ASN PRO LEU ASN ILE SEQRES 12 A 350 ARG PRO LYS ALA VAL GLU LYS ILE VAL PHE PHE SER ASP SEQRES 13 A 350 ILE VAL SER PHE SER THR PHE ALA GLU LYS LEU PRO VAL SEQRES 14 A 350 GLU GLU VAL VAL SER VAL VAL ASN SER TYR PHE SER VAL SEQRES 15 A 350 CYS THR ALA ILE ILE THR ARG GLN GLY GLY GLU VAL THR SEQRES 16 A 350 LYS PHE ILE GLY ASP CYS VAL MET ALA TYR PHE ASP GLY SEQRES 17 A 350 ASP CYS ALA ASP GLN ALA ILE GLN ALA SER LEU ASP ILE SEQRES 18 A 350 LEU MET GLU LEU GLU ILE LEU ARG ASN SER ALA PRO GLU SEQRES 19 A 350 GLY SER PRO LEU ARG VAL LEU TYR SER GLY ILE GLY LEU SEQRES 20 A 350 ALA LYS GLY LYS VAL ILE GLU GLY ASN ILE GLY SER GLU SEQRES 21 A 350 LEU LYS ARG ASP TYR THR ILE LEU GLY ASP ALA VAL ASN SEQRES 22 A 350 VAL ALA ALA ARG LEU GLU ALA LEU THR ARG GLN LEU SER SEQRES 23 A 350 GLN ALA LEU VAL PHE SER SER GLU VAL LYS ASN SER ALA SEQRES 24 A 350 THR LYS SER TRP ASN PHE ILE TRP LEU THR ASP SER GLU SEQRES 25 A 350 LEU LYS GLY LYS SER GLU SER ILE ASP ILE TYR SER ILE SEQRES 26 A 350 ASP ASN GLU MET THR ARG LYS SER SER GLY GLY LEU GLU SEQRES 27 A 350 ILE ALA ARG ASN ILE GLY HIS TYR LEU GLU ARG VAL HET FMN A 401 49 HET ATP A 402 84 HET MG A 403 1 HET MG A 404 1 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *129(H2 O) HELIX 1 AA1 SER A 15 ALA A 33 1 19 HELIX 2 AA2 GLU A 53 ASP A 67 1 15 HELIX 3 AA3 LEU A 104 TYR A 125 1 22 HELIX 4 AA4 GLN A 127 GLN A 136 1 10 HELIX 5 AA5 ASN A 139 ILE A 143 5 5 HELIX 6 AA6 SER A 159 LEU A 167 1 9 HELIX 7 AA7 PRO A 168 GLN A 190 1 23 HELIX 8 AA8 CYS A 210 ALA A 232 1 23 HELIX 9 AA9 SER A 236 LEU A 241 5 6 HELIX 10 AB1 GLY A 269 THR A 282 1 14 HELIX 11 AB2 SER A 293 ALA A 299 1 7 SHEET 1 AA1 5 HIS A 70 GLU A 79 0 SHEET 2 AA1 5 LYS A 2 PHE A 10 -1 N LYS A 9 O THR A 71 SHEET 3 AA1 5 ILE A 45 GLY A 52 -1 O LEU A 50 N LEU A 4 SHEET 4 AA1 5 THR A 36 LEU A 42 -1 N LEU A 40 O PHE A 47 SHEET 5 AA1 5 GLN A 93 ASN A 96 1 O ILE A 95 N LEU A 39 SHEET 1 AA2 5 GLU A 193 ILE A 198 0 SHEET 2 AA2 5 CYS A 201 ASP A 207 -1 O MET A 203 N LYS A 196 SHEET 3 AA2 5 LYS A 146 ILE A 157 -1 N PHE A 153 O ALA A 204 SHEET 4 AA2 5 SER A 243 GLY A 258 -1 O GLY A 246 N PHE A 154 SHEET 5 AA2 5 ARG A 263 LEU A 268 -1 O ASP A 264 N ILE A 257 SHEET 1 AA3 7 GLU A 193 ILE A 198 0 SHEET 2 AA3 7 CYS A 201 ASP A 207 -1 O MET A 203 N LYS A 196 SHEET 3 AA3 7 LYS A 146 ILE A 157 -1 N PHE A 153 O ALA A 204 SHEET 4 AA3 7 SER A 243 GLY A 258 -1 O GLY A 246 N PHE A 154 SHEET 5 AA3 7 LEU A 289 SER A 292 1 O VAL A 290 N ILE A 245 SHEET 6 AA3 7 ILE A 322 ILE A 325 -1 O TYR A 323 N PHE A 291 SHEET 7 AA3 7 PHE A 305 LEU A 308 -1 N LEU A 308 O ILE A 322 LINK OD1 ASP A 156 MG MG A 403 1555 1555 1.94 LINK OD2 ASP A 156 MG MG A 404 1555 1555 2.25 LINK O ILE A 157 MG MG A 403 1555 1555 2.27 LINK OD2 ASP A 200 MG MG A 403 1555 1555 2.08 LINK OD1 ASP A 200 MG MG A 404 1555 1555 2.45 LINK O2GAATP A 402 MG MG A 403 1555 1555 2.19 LINK O2GBATP A 402 MG MG A 403 1555 1555 2.73 LINK O1BAATP A 402 MG MG A 403 1555 1555 2.12 LINK O1BBATP A 402 MG MG A 403 1555 1555 2.72 LINK O2AAATP A 402 MG MG A 403 1555 1555 2.15 LINK O2ABATP A 402 MG MG A 403 1555 1555 2.64 LINK O2AAATP A 402 MG MG A 404 1555 1555 2.43 LINK O2ABATP A 402 MG MG A 404 1555 1555 2.71 LINK MG MG A 404 O HOH A 521 1555 1555 2.40 LINK MG MG A 404 O HOH A 550 1555 1555 2.58 CRYST1 54.300 145.800 105.300 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006859 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009497 0.00000