HEADER LIGASE 05-SEP-23 8QFU TITLE DIELS-ALDERASE ABYU MUTANT - Y76F COMPND MOL_ID: 1; COMPND 2 MOLECULE: YD REPEAT-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MICROMONOSPORA MARIS AB-18-032; SOURCE 3 ORGANISM_TAXID: 263358; SOURCE 4 GENE: VAB18032_16470; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS THE Y76F MUTANT OF WT DIELS-ALDERASE PROTEIN ABYU, WHICH CATALYSES KEYWDS 2 THE CYCLISATION OF SPIROTETRONATE PRECURSOR OF ABYSSOMICIN C AND KEYWDS 3 ATROP-ABYSSOMICIN C., BIOSYNTHETIC PROTEIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TIWARI,N.M.BURTON,S.YANG,P.R.RACE REVDAT 1 18-SEP-24 8QFU 0 SPRSDE 18-SEP-24 8QFU 7Z6P JRNL AUTH K.TIWARI,N.M.BURTON,S.YANG,P.R.RACE JRNL TITL STRUCTURE OF DIELS-ALDERASE ABYU MUTANT Y76F AT 1.56 JRNL TITL 2 ANGSTROMS RESOLUTION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 84306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.021 REMARK 3 FREE R VALUE TEST SET COUNT : 4233 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5837 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 305 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4120 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 484 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.57600 REMARK 3 B22 (A**2) : -2.33700 REMARK 3 B33 (A**2) : -0.08300 REMARK 3 B12 (A**2) : -0.79900 REMARK 3 B13 (A**2) : 0.12000 REMARK 3 B23 (A**2) : -0.48700 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.374 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4307 ; 0.015 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4054 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5858 ; 1.915 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9318 ; 0.654 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 540 ; 6.885 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 32 ; 8.147 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 672 ;12.775 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 655 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5140 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1016 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 677 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 29 ; 0.098 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2058 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 432 ; 0.240 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2136 ; 4.316 ; 3.583 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2136 ; 4.312 ; 3.583 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2666 ; 5.859 ; 6.392 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2667 ; 5.860 ; 6.392 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2171 ; 5.901 ; 4.191 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2169 ; 5.861 ; 4.187 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3186 ; 8.542 ; 7.422 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3187 ; 8.541 ; 7.424 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8QFU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292132841. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84307 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 40.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25 M MAGNESIUM CHLORIDE 0.1M HEPES REMARK 280 10% PEG 6K, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 ALA A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 GLU A -6 REMARK 465 VAL A -5 REMARK 465 LEU A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 ARG A 4 REMARK 465 LEU A 5 REMARK 465 GLU A 6 REMARK 465 THR A 7 REMARK 465 ARG A 8 REMARK 465 MET B -18 REMARK 465 ALA B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 GLU B -6 REMARK 465 VAL B -5 REMARK 465 LEU B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 ARG B 4 REMARK 465 LEU B 5 REMARK 465 GLU B 6 REMARK 465 THR B 7 REMARK 465 ARG B 8 REMARK 465 MET C -18 REMARK 465 ALA C -17 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 SER C -10 REMARK 465 SER C -9 REMARK 465 GLY C -8 REMARK 465 LEU C -7 REMARK 465 GLU C -6 REMARK 465 VAL C -5 REMARK 465 LEU C -4 REMARK 465 PHE C -3 REMARK 465 GLN C -2 REMARK 465 GLY C -1 REMARK 465 PRO C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 GLU C 3 REMARK 465 ARG C 4 REMARK 465 LEU C 5 REMARK 465 GLU C 6 REMARK 465 THR C 7 REMARK 465 ARG C 8 REMARK 465 MET D -18 REMARK 465 ALA D -17 REMARK 465 HIS D -16 REMARK 465 HIS D -15 REMARK 465 HIS D -14 REMARK 465 HIS D -13 REMARK 465 HIS D -12 REMARK 465 HIS D -11 REMARK 465 SER D -10 REMARK 465 SER D -9 REMARK 465 GLY D -8 REMARK 465 LEU D -7 REMARK 465 GLU D -6 REMARK 465 VAL D -5 REMARK 465 LEU D -4 REMARK 465 PHE D -3 REMARK 465 GLN D -2 REMARK 465 GLY D -1 REMARK 465 PRO D 0 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 GLU D 3 REMARK 465 ARG D 4 REMARK 465 LEU D 5 REMARK 465 GLU D 6 REMARK 465 THR D 7 REMARK 465 ARG D 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN D 96 O HOH D 303 1.44 REMARK 500 HH22 ARG B 136 O HOH B 304 1.53 REMARK 500 OE1 GLN A 123 HH11 ARG A 136 1.55 REMARK 500 OD2 ASP B 84 HE ARG B 114 1.57 REMARK 500 O HOH B 376 O HOH B 377 1.84 REMARK 500 O HOH C 431 O HOH D 382 1.90 REMARK 500 O HOH D 303 O HOH D 307 1.92 REMARK 500 O HOH C 407 O HOH C 431 2.02 REMARK 500 O HOH A 427 O HOH A 433 2.05 REMARK 500 O HOH B 380 O HOH B 400 2.10 REMARK 500 O HOH A 303 O HOH A 423 2.12 REMARK 500 O HOH B 301 O HOH B 357 2.14 REMARK 500 O GLN D 52 O HOH D 301 2.15 REMARK 500 O HOH C 302 O HOH C 407 2.16 REMARK 500 O TRP B 92 O HOH B 301 2.16 REMARK 500 O HOH B 390 O HOH B 394 2.16 REMARK 500 O HOH C 353 O HOH C 403 2.17 REMARK 500 O TRP D 92 O HOH D 302 2.18 REMARK 500 O HOH B 361 O HOH C 401 2.19 REMARK 500 ND2 ASN D 96 O HOH D 303 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU D 48 CD GLU D 48 OE1 0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 136 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 136 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG D 136 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG D 136 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 -38.54 69.30 REMARK 500 ARG A 130 118.98 -38.10 REMARK 500 ARG B 130 100.41 -12.24 REMARK 500 LYS B 131 47.47 36.32 REMARK 500 ALA C 32 67.22 -153.87 REMARK 500 LYS C 131 -65.40 -127.25 REMARK 500 ARG D 130 120.19 -34.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 114 0.08 SIDE CHAIN REMARK 500 ARG C 136 0.07 SIDE CHAIN REMARK 500 ARG D 136 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 439 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH D 403 DISTANCE = 5.89 ANGSTROMS DBREF 8QFU A 1 141 UNP F4F7G1 F4F7G1_MICM1 1 141 DBREF 8QFU B 1 141 UNP F4F7G1 F4F7G1_MICM1 1 141 DBREF 8QFU C 1 141 UNP F4F7G1 F4F7G1_MICM1 1 141 DBREF 8QFU D 1 141 UNP F4F7G1 F4F7G1_MICM1 1 141 SEQADV 8QFU MET A -18 UNP F4F7G1 INITIATING METHIONINE SEQADV 8QFU ALA A -17 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS A -16 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS A -15 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS A -14 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS A -13 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS A -12 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS A -11 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU SER A -10 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU SER A -9 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU GLY A -8 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU LEU A -7 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU GLU A -6 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU VAL A -5 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU LEU A -4 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU PHE A -3 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU GLN A -2 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU GLY A -1 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU PRO A 0 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU PHE A 76 UNP F4F7G1 TYR 76 ENGINEERED MUTATION SEQADV 8QFU MET B -18 UNP F4F7G1 INITIATING METHIONINE SEQADV 8QFU ALA B -17 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS B -16 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS B -15 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS B -14 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS B -13 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS B -12 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS B -11 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU SER B -10 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU SER B -9 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU GLY B -8 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU LEU B -7 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU GLU B -6 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU VAL B -5 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU LEU B -4 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU PHE B -3 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU GLN B -2 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU GLY B -1 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU PRO B 0 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU PHE B 76 UNP F4F7G1 TYR 76 ENGINEERED MUTATION SEQADV 8QFU MET C -18 UNP F4F7G1 INITIATING METHIONINE SEQADV 8QFU ALA C -17 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS C -16 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS C -15 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS C -14 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS C -13 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS C -12 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS C -11 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU SER C -10 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU SER C -9 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU GLY C -8 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU LEU C -7 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU GLU C -6 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU VAL C -5 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU LEU C -4 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU PHE C -3 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU GLN C -2 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU GLY C -1 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU PRO C 0 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU PHE C 76 UNP F4F7G1 TYR 76 ENGINEERED MUTATION SEQADV 8QFU MET D -18 UNP F4F7G1 INITIATING METHIONINE SEQADV 8QFU ALA D -17 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS D -16 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS D -15 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS D -14 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS D -13 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS D -12 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU HIS D -11 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU SER D -10 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU SER D -9 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU GLY D -8 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU LEU D -7 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU GLU D -6 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU VAL D -5 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU LEU D -4 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU PHE D -3 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU GLN D -2 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU GLY D -1 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU PRO D 0 UNP F4F7G1 EXPRESSION TAG SEQADV 8QFU PHE D 76 UNP F4F7G1 TYR 76 ENGINEERED MUTATION SEQRES 1 A 160 MET ALA HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU SEQRES 2 A 160 VAL LEU PHE GLN GLY PRO MET THR GLU ARG LEU GLU THR SEQRES 3 A 160 ARG PRO GLN ALA LEU LEU ILE LYS VAL PRO THR GLU ILE SEQRES 4 A 160 VAL VAL LYS VAL VAL ASP ASP VAL ASP VAL ALA ALA PRO SEQRES 5 A 160 ALA VAL GLY GLN VAL GLY LYS PHE ASP ASP GLU LEU TYR SEQRES 6 A 160 ASP GLU ALA GLY ALA GLN ILE GLY THR SER SER GLY ASN SEQRES 7 A 160 PHE ARG ILE GLU TYR VAL ARG PRO THR ASP GLY GLY LEU SEQRES 8 A 160 LEU THR TYR PHE GLN GLU ASP ILE THR LEU SER ASP GLY SEQRES 9 A 160 VAL ILE HIS ALA GLU GLY TRP ALA ASP PHE ASN ASP VAL SEQRES 10 A 160 ARG THR SER LYS TRP VAL PHE TYR PRO ALA THR GLY VAL SEQRES 11 A 160 SER GLY ARG TYR LEU GLY LEU THR GLY PHE ARG GLN TRP SEQRES 12 A 160 ARG MET THR GLY VAL ARG LYS SER ALA GLU ALA ARG ILE SEQRES 13 A 160 LEU LEU GLY GLU SEQRES 1 B 160 MET ALA HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU SEQRES 2 B 160 VAL LEU PHE GLN GLY PRO MET THR GLU ARG LEU GLU THR SEQRES 3 B 160 ARG PRO GLN ALA LEU LEU ILE LYS VAL PRO THR GLU ILE SEQRES 4 B 160 VAL VAL LYS VAL VAL ASP ASP VAL ASP VAL ALA ALA PRO SEQRES 5 B 160 ALA VAL GLY GLN VAL GLY LYS PHE ASP ASP GLU LEU TYR SEQRES 6 B 160 ASP GLU ALA GLY ALA GLN ILE GLY THR SER SER GLY ASN SEQRES 7 B 160 PHE ARG ILE GLU TYR VAL ARG PRO THR ASP GLY GLY LEU SEQRES 8 B 160 LEU THR TYR PHE GLN GLU ASP ILE THR LEU SER ASP GLY SEQRES 9 B 160 VAL ILE HIS ALA GLU GLY TRP ALA ASP PHE ASN ASP VAL SEQRES 10 B 160 ARG THR SER LYS TRP VAL PHE TYR PRO ALA THR GLY VAL SEQRES 11 B 160 SER GLY ARG TYR LEU GLY LEU THR GLY PHE ARG GLN TRP SEQRES 12 B 160 ARG MET THR GLY VAL ARG LYS SER ALA GLU ALA ARG ILE SEQRES 13 B 160 LEU LEU GLY GLU SEQRES 1 C 160 MET ALA HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU SEQRES 2 C 160 VAL LEU PHE GLN GLY PRO MET THR GLU ARG LEU GLU THR SEQRES 3 C 160 ARG PRO GLN ALA LEU LEU ILE LYS VAL PRO THR GLU ILE SEQRES 4 C 160 VAL VAL LYS VAL VAL ASP ASP VAL ASP VAL ALA ALA PRO SEQRES 5 C 160 ALA VAL GLY GLN VAL GLY LYS PHE ASP ASP GLU LEU TYR SEQRES 6 C 160 ASP GLU ALA GLY ALA GLN ILE GLY THR SER SER GLY ASN SEQRES 7 C 160 PHE ARG ILE GLU TYR VAL ARG PRO THR ASP GLY GLY LEU SEQRES 8 C 160 LEU THR TYR PHE GLN GLU ASP ILE THR LEU SER ASP GLY SEQRES 9 C 160 VAL ILE HIS ALA GLU GLY TRP ALA ASP PHE ASN ASP VAL SEQRES 10 C 160 ARG THR SER LYS TRP VAL PHE TYR PRO ALA THR GLY VAL SEQRES 11 C 160 SER GLY ARG TYR LEU GLY LEU THR GLY PHE ARG GLN TRP SEQRES 12 C 160 ARG MET THR GLY VAL ARG LYS SER ALA GLU ALA ARG ILE SEQRES 13 C 160 LEU LEU GLY GLU SEQRES 1 D 160 MET ALA HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU SEQRES 2 D 160 VAL LEU PHE GLN GLY PRO MET THR GLU ARG LEU GLU THR SEQRES 3 D 160 ARG PRO GLN ALA LEU LEU ILE LYS VAL PRO THR GLU ILE SEQRES 4 D 160 VAL VAL LYS VAL VAL ASP ASP VAL ASP VAL ALA ALA PRO SEQRES 5 D 160 ALA VAL GLY GLN VAL GLY LYS PHE ASP ASP GLU LEU TYR SEQRES 6 D 160 ASP GLU ALA GLY ALA GLN ILE GLY THR SER SER GLY ASN SEQRES 7 D 160 PHE ARG ILE GLU TYR VAL ARG PRO THR ASP GLY GLY LEU SEQRES 8 D 160 LEU THR TYR PHE GLN GLU ASP ILE THR LEU SER ASP GLY SEQRES 9 D 160 VAL ILE HIS ALA GLU GLY TRP ALA ASP PHE ASN ASP VAL SEQRES 10 D 160 ARG THR SER LYS TRP VAL PHE TYR PRO ALA THR GLY VAL SEQRES 11 D 160 SER GLY ARG TYR LEU GLY LEU THR GLY PHE ARG GLN TRP SEQRES 12 D 160 ARG MET THR GLY VAL ARG LYS SER ALA GLU ALA ARG ILE SEQRES 13 D 160 LEU LEU GLY GLU HET EPE A 201 33 HET EPE B 201 33 HET EPE C 201 33 HET EPE D 201 33 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 5 EPE 4(C8 H18 N2 O4 S) FORMUL 9 HOH *484(H2 O) HELIX 1 AA1 PHE A 95 ARG A 99 1 5 HELIX 2 AA2 PHE B 95 ARG B 99 1 5 HELIX 3 AA3 SER B 112 LEU B 116 5 5 HELIX 4 AA4 PHE C 95 THR C 100 1 6 HELIX 5 AA5 SER C 112 LEU C 116 5 5 HELIX 6 AA6 PHE D 95 THR D 100 1 6 SHEET 1 AA1 9 ALA A 11 ASP A 26 0 SHEET 2 AA1 9 VAL A 38 TYR A 46 -1 O GLU A 44 N ILE A 20 SHEET 3 AA1 9 GLN A 52 VAL A 65 -1 O ILE A 53 N LEU A 45 SHEET 4 AA1 9 LEU A 72 LEU A 82 -1 O LEU A 73 N GLU A 63 SHEET 5 AA1 9 GLY A 85 ASP A 94 -1 O ILE A 87 N ILE A 80 SHEET 6 AA1 9 VAL A 104 GLY A 113 -1 O THR A 109 N HIS A 88 SHEET 7 AA1 9 THR A 119 MET A 126 -1 O ARG A 122 N TYR A 106 SHEET 8 AA1 9 SER A 132 GLY A 140 -1 O LEU A 138 N PHE A 121 SHEET 9 AA1 9 ALA A 11 ASP A 26 -1 N LEU A 12 O LEU A 139 SHEET 1 AA2 9 ALA B 11 ASP B 26 0 SHEET 2 AA2 9 VAL B 38 TYR B 46 -1 O GLU B 44 N ILE B 20 SHEET 3 AA2 9 GLN B 52 VAL B 65 -1 O SER B 56 N ASP B 43 SHEET 4 AA2 9 LEU B 72 LEU B 82 -1 O LEU B 73 N GLU B 63 SHEET 5 AA2 9 GLY B 85 ASP B 94 -1 O ILE B 87 N ILE B 80 SHEET 6 AA2 9 VAL B 104 GLY B 110 -1 O THR B 109 N HIS B 88 SHEET 7 AA2 9 THR B 119 MET B 126 -1 O ARG B 122 N TYR B 106 SHEET 8 AA2 9 SER B 132 GLY B 140 -1 O GLY B 140 N THR B 119 SHEET 9 AA2 9 ALA B 11 ASP B 26 -1 N LEU B 12 O LEU B 139 SHEET 1 AA3 9 ALA C 11 ASP C 26 0 SHEET 2 AA3 9 VAL C 38 TYR C 46 -1 O GLU C 44 N ILE C 20 SHEET 3 AA3 9 GLN C 52 VAL C 65 -1 O ILE C 53 N LEU C 45 SHEET 4 AA3 9 LEU C 72 LEU C 82 -1 O LEU C 73 N GLU C 63 SHEET 5 AA3 9 GLY C 85 ASP C 94 -1 O ILE C 87 N ILE C 80 SHEET 6 AA3 9 VAL C 104 GLY C 110 -1 O THR C 109 N HIS C 88 SHEET 7 AA3 9 THR C 119 GLY C 128 -1 O ARG C 122 N TYR C 106 SHEET 8 AA3 9 SER C 132 GLY C 140 -1 O ARG C 136 N GLN C 123 SHEET 9 AA3 9 ALA C 11 ASP C 26 -1 N LEU C 12 O LEU C 139 SHEET 1 AA4 9 ALA D 11 ASP D 26 0 SHEET 2 AA4 9 VAL D 38 TYR D 46 -1 O GLU D 44 N ILE D 20 SHEET 3 AA4 9 GLN D 52 VAL D 65 -1 O ILE D 53 N LEU D 45 SHEET 4 AA4 9 LEU D 72 LEU D 82 -1 O GLN D 77 N ASN D 59 SHEET 5 AA4 9 GLY D 85 ASP D 94 -1 O ILE D 87 N ILE D 80 SHEET 6 AA4 9 VAL D 104 GLY D 113 -1 O THR D 109 N HIS D 88 SHEET 7 AA4 9 THR D 119 MET D 126 -1 O ARG D 122 N TYR D 106 SHEET 8 AA4 9 SER D 132 GLY D 140 -1 O ARG D 136 N GLN D 123 SHEET 9 AA4 9 ALA D 11 ASP D 26 -1 N ILE D 14 O ILE D 137 CRYST1 49.710 53.820 60.480 90.11 96.98 94.66 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020117 0.001640 0.002483 0.00000 SCALE2 0.000000 0.018642 0.000222 0.00000 SCALE3 0.000000 0.000000 0.016659 0.00000