HEADER TRANSFERASE 05-SEP-23 8QG9 TITLE CRYSTAL STRUCTURE OF NAD KINASE 1 FROM LISTERIA MONOCYTOGENES IN TITLE 2 COMPLEX WITH A DI-ADENOSINE DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-DEPENDENT NAD KINASE; COMPND 5 EC: 2.7.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES EGD-E; SOURCE 3 ORGANISM_TAXID: 169963; SOURCE 4 GENE: NADK1, LMO0968; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TETRAMERIC NAD-KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GELIN,G.LABESSE,C.LIONNE REVDAT 1 19-MAR-25 8QG9 0 JRNL AUTH M.GELIN,G.LABESSE,D.CLEMENT,S.POCHET,C.LIONNE,C.LESEIGNEUR, JRNL AUTH 2 V.HUTEAU JRNL TITL CRYSTAL STRUCTURE OF NAD KINASE 1 FROM LISTERIA JRNL TITL 2 MONOCYTOGENES IN COMPLEX WITH A DI-ADENOSINE DERIVATIVE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 25823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9700 - 3.7200 1.00 2955 140 0.1935 0.2339 REMARK 3 2 3.7200 - 2.9600 0.99 2812 151 0.2085 0.2176 REMARK 3 3 2.9600 - 2.5800 0.99 2766 157 0.2195 0.2545 REMARK 3 4 2.5800 - 2.3500 0.99 2787 139 0.2051 0.2412 REMARK 3 5 2.3500 - 2.1800 0.99 2744 143 0.2024 0.2449 REMARK 3 6 2.1800 - 2.0500 0.99 2749 156 0.2273 0.2751 REMARK 3 7 2.0500 - 1.9500 0.99 2732 150 0.2410 0.2555 REMARK 3 8 1.9500 - 1.8600 0.96 2631 148 0.2657 0.2471 REMARK 3 9 1.8600 - 1.7900 0.85 2337 126 0.3232 0.3303 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.211 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.251 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2181 REMARK 3 ANGLE : 1.212 2962 REMARK 3 CHIRALITY : 0.088 326 REMARK 3 PLANARITY : 0.009 372 REMARK 3 DIHEDRAL : 14.653 787 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8794 23.0381 22.0195 REMARK 3 T TENSOR REMARK 3 T11: 0.4594 T22: 0.4220 REMARK 3 T33: 0.3589 T12: 0.1200 REMARK 3 T13: 0.0501 T23: -0.0844 REMARK 3 L TENSOR REMARK 3 L11: 2.0786 L22: 1.4916 REMARK 3 L33: 3.0174 L12: -0.1611 REMARK 3 L13: -0.7952 L23: 0.9899 REMARK 3 S TENSOR REMARK 3 S11: -0.1138 S12: -0.1906 S13: 0.1807 REMARK 3 S21: 0.1615 S22: -0.0901 S23: 0.1987 REMARK 3 S31: -0.2032 S32: -0.4512 S33: 0.1080 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4212 24.4634 10.9904 REMARK 3 T TENSOR REMARK 3 T11: 0.3186 T22: 0.4822 REMARK 3 T33: 0.4109 T12: 0.1540 REMARK 3 T13: 0.0481 T23: -0.0639 REMARK 3 L TENSOR REMARK 3 L11: 1.0889 L22: 1.7436 REMARK 3 L33: 2.3702 L12: -0.2750 REMARK 3 L13: -1.0623 L23: 0.0823 REMARK 3 S TENSOR REMARK 3 S11: 0.1704 S12: -0.0898 S13: 0.4632 REMARK 3 S21: -0.0469 S22: -0.0843 S23: 0.0828 REMARK 3 S31: -0.9063 S32: -0.6776 S33: 0.1489 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7679 9.8442 -5.3506 REMARK 3 T TENSOR REMARK 3 T11: 0.2010 T22: 0.2707 REMARK 3 T33: 0.2634 T12: 0.0156 REMARK 3 T13: -0.0036 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 1.1903 L22: 2.0573 REMARK 3 L33: 3.5810 L12: -0.5585 REMARK 3 L13: 0.2691 L23: 0.0410 REMARK 3 S TENSOR REMARK 3 S11: 0.0702 S12: 0.1590 S13: -0.0237 REMARK 3 S21: -0.1213 S22: -0.0790 S23: 0.2558 REMARK 3 S31: 0.1860 S32: -0.1835 S33: 0.0476 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5413 11.5636 -6.7126 REMARK 3 T TENSOR REMARK 3 T11: 0.1975 T22: 0.2486 REMARK 3 T33: 0.2567 T12: 0.0617 REMARK 3 T13: -0.0018 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.5211 L22: 2.7367 REMARK 3 L33: 2.8724 L12: -0.2813 REMARK 3 L13: -0.2126 L23: -0.8327 REMARK 3 S TENSOR REMARK 3 S11: 0.0582 S12: 0.1596 S13: -0.0082 REMARK 3 S21: -0.3635 S22: -0.0940 S23: 0.2975 REMARK 3 S31: 0.0825 S32: -0.2000 S33: 0.0680 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 217 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4551 18.6998 3.5222 REMARK 3 T TENSOR REMARK 3 T11: 0.3186 T22: 0.3919 REMARK 3 T33: 0.4255 T12: 0.0743 REMARK 3 T13: 0.0525 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 1.6152 L22: 1.4533 REMARK 3 L33: 2.9768 L12: -0.4962 REMARK 3 L13: -0.0137 L23: -0.3245 REMARK 3 S TENSOR REMARK 3 S11: 0.1152 S12: -0.1658 S13: 0.0105 REMARK 3 S21: 0.2077 S22: -0.0656 S23: 0.2823 REMARK 3 S31: -0.1837 S32: -0.5801 S33: 0.0257 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6153 12.9310 17.3230 REMARK 3 T TENSOR REMARK 3 T11: 0.3006 T22: 0.2839 REMARK 3 T33: 0.2766 T12: -0.0092 REMARK 3 T13: 0.0424 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 4.1996 L22: 5.1856 REMARK 3 L33: 4.5635 L12: 0.4973 REMARK 3 L13: 0.2892 L23: 0.4253 REMARK 3 S TENSOR REMARK 3 S11: 0.0520 S12: -0.6478 S13: 0.1084 REMARK 3 S21: 0.7002 S22: -0.0062 S23: 0.1918 REMARK 3 S31: 0.1569 S32: 0.3636 S33: 0.0596 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QG9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292133129. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8-5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96863 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25864 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 47.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.94300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX, PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MM NABR, 220 MM KCITRATE, GLYCEROL REMARK 280 6%, 15-16% W/V PEG400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.45550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.07750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.17250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.45550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.07750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.17250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.45550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.07750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.17250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.45550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.07750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.17250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 62.91100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 62.91100 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 92 REMARK 465 GLY A 93 REMARK 465 GLU A 94 REMARK 465 ILE A 111 REMARK 465 GLY A 112 REMARK 465 LYS A 113 REMARK 465 LEU A 265 REMARK 465 GLU A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ASP A 28 CG OD1 OD2 REMARK 470 ARG A 79 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 109 -160.38 -105.49 REMARK 500 ASN A 122 -65.95 -102.30 REMARK 500 SER A 129 37.99 -77.15 REMARK 500 ALA A 162 -129.11 -109.89 REMARK 500 ASN A 213 -84.97 -116.78 REMARK 500 ASP A 222 -131.12 56.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8A9V RELATED DB: PDB DBREF 8QG9 A 1 264 UNP Q8Y8D7 NADK1_LISMO 1 264 SEQADV 8QG9 LEU A 265 UNP Q8Y8D7 EXPRESSION TAG SEQADV 8QG9 GLU A 266 UNP Q8Y8D7 EXPRESSION TAG SEQADV 8QG9 HIS A 267 UNP Q8Y8D7 EXPRESSION TAG SEQADV 8QG9 HIS A 268 UNP Q8Y8D7 EXPRESSION TAG SEQADV 8QG9 HIS A 269 UNP Q8Y8D7 EXPRESSION TAG SEQADV 8QG9 HIS A 270 UNP Q8Y8D7 EXPRESSION TAG SEQADV 8QG9 HIS A 271 UNP Q8Y8D7 EXPRESSION TAG SEQADV 8QG9 HIS A 272 UNP Q8Y8D7 EXPRESSION TAG SEQRES 1 A 272 MET LYS TYR MET ILE THR SER LYS GLY ASP GLU LYS SER SEQRES 2 A 272 ASP LEU LEU ARG LEU ASN MET ILE ALA GLY PHE GLY GLU SEQRES 3 A 272 TYR ASP MET GLU TYR ASP ASP VAL GLU PRO GLU ILE VAL SEQRES 4 A 272 ILE SER ILE GLY GLY ASP GLY THR PHE LEU SER ALA PHE SEQRES 5 A 272 HIS GLN TYR GLU GLU ARG LEU ASP GLU ILE ALA PHE ILE SEQRES 6 A 272 GLY ILE HIS THR GLY HIS LEU GLY PHE TYR ALA ASP TRP SEQRES 7 A 272 ARG PRO ALA GLU ALA ASP LYS LEU VAL LYS LEU LEU ALA SEQRES 8 A 272 LYS GLY GLU TYR GLN LYS VAL SER TYR PRO LEU LEU LYS SEQRES 9 A 272 THR THR VAL LYS TYR GLY ILE GLY LYS LYS GLU ALA THR SEQRES 10 A 272 TYR LEU ALA LEU ASN GLU SER THR VAL LYS SER SER GLY SEQRES 11 A 272 GLY PRO PHE VAL VAL ASP VAL VAL ILE ASN ASP ILE HIS SEQRES 12 A 272 PHE GLU ARG PHE ARG GLY ASP GLY LEU CYS MET SER THR SEQRES 13 A 272 PRO SER GLY THR THR ALA TYR ASN LYS SER LEU GLY GLY SEQRES 14 A 272 ALA LEU MET HIS PRO SER ILE GLU ALA MET GLN LEU THR SEQRES 15 A 272 GLU MET ALA SER ILE ASN ASN ARG VAL TYR ARG THR ILE SEQRES 16 A 272 GLY SER PRO LEU VAL PHE PRO LYS HIS HIS VAL VAL SER SEQRES 17 A 272 LEU GLN PRO VAL ASN ASP LYS ASP PHE GLN ILE SER VAL SEQRES 18 A 272 ASP HIS LEU SER ILE LEU HIS ARG ASP VAL GLN GLU ILE SEQRES 19 A 272 ARG TYR GLU VAL SER ALA LYS LYS ILE HIS PHE ALA ARG SEQRES 20 A 272 PHE ARG SER PHE PRO PHE TRP ARG ARG VAL HIS ASP SER SEQRES 21 A 272 PHE ILE GLU ASP LEU GLU HIS HIS HIS HIS HIS HIS HET CIT A 301 13 HET UWF A 302 44 HETNAM CIT CITRIC ACID HETNAM UWF (2~{R},3~{R},4~{S},5~{R})-2-(6-AMINOPURIN-9-YL)-5-[[3- HETNAM 2 UWF [6-AZANYL-9-[(2~{R},3~{R},4~{S},5~{R})-5- HETNAM 3 UWF (HYDROXYMETHYL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]PURIN-8- HETNAM 4 UWF YL]PROP-2-YNYL-PROPAN-2-YL-AMINO]METHYL]OXOLANE-3,4- HETNAM 5 UWF DIOL FORMUL 2 CIT C6 H8 O7 FORMUL 3 UWF C26 H33 N11 O7 FORMUL 4 HOH *82(H2 O) HELIX 1 AA1 ASP A 10 GLY A 25 1 16 HELIX 2 AA2 GLY A 44 TYR A 55 1 12 HELIX 3 AA3 GLU A 56 GLU A 61 5 6 HELIX 4 AA4 ARG A 79 ALA A 81 5 3 HELIX 5 AA5 GLU A 82 ALA A 91 1 10 HELIX 6 AA6 PRO A 157 THR A 161 5 5 HELIX 7 AA7 ALA A 162 LEU A 167 1 6 HELIX 8 AA8 PRO A 252 ILE A 262 1 11 SHEET 1 AA110 GLU A 30 TYR A 31 0 SHEET 2 AA110 LYS A 2 SER A 7 1 N TYR A 3 O GLU A 30 SHEET 3 AA110 ILE A 38 GLY A 43 1 O ILE A 40 N MET A 4 SHEET 4 AA110 ALA A 63 HIS A 68 1 O ILE A 67 N SER A 41 SHEET 5 AA110 GLU A 233 ARG A 247 1 O HIS A 244 N PHE A 64 SHEET 6 AA110 VAL A 207 PRO A 211 -1 N VAL A 207 O TYR A 236 SHEET 7 AA110 PHE A 133 ILE A 139 -1 N VAL A 138 O SER A 208 SHEET 8 AA110 ILE A 142 SER A 155 -1 O GLU A 145 N VAL A 137 SHEET 9 AA110 ALA A 178 SER A 186 -1 O GLN A 180 N SER A 155 SHEET 10 AA110 LEU A 199 PRO A 202 -1 O LEU A 199 N LEU A 181 SHEET 1 AA2 9 GLU A 115 ALA A 120 0 SHEET 2 AA2 9 GLN A 96 LYS A 108 -1 N VAL A 107 O ALA A 116 SHEET 3 AA2 9 GLU A 233 ARG A 247 -1 O PHE A 245 N VAL A 98 SHEET 4 AA2 9 VAL A 207 PRO A 211 -1 N VAL A 207 O TYR A 236 SHEET 5 AA2 9 PHE A 133 ILE A 139 -1 N VAL A 138 O SER A 208 SHEET 6 AA2 9 ILE A 142 SER A 155 -1 O GLU A 145 N VAL A 137 SHEET 7 AA2 9 GLU A 123 SER A 128 -1 N SER A 124 O MET A 154 SHEET 8 AA2 9 PHE A 217 VAL A 221 -1 O GLN A 218 N LYS A 127 SHEET 9 AA2 9 LEU A 224 HIS A 228 -1 O HIS A 228 N PHE A 217 CRYST1 62.911 74.155 118.345 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015895 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013485 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008450 0.00000 CONECT 2069 2070 2071 2072 CONECT 2070 2069 CONECT 2071 2069 CONECT 2072 2069 2073 CONECT 2073 2072 2074 2075 2079 CONECT 2074 2073 CONECT 2075 2073 2076 CONECT 2076 2075 2077 2078 CONECT 2077 2076 CONECT 2078 2076 CONECT 2079 2073 2080 2081 CONECT 2080 2079 CONECT 2081 2079 CONECT 2082 2083 2087 2112 CONECT 2083 2082 2084 2111 CONECT 2084 2083 2086 2110 CONECT 2085 2099 2111 2112 CONECT 2086 2084 2089 CONECT 2087 2082 2089 CONECT 2088 2090 2112 2121 CONECT 2089 2086 2087 CONECT 2090 2088 2091 2119 CONECT 2091 2090 2092 2120 CONECT 2092 2091 2093 2121 CONECT 2093 2092 2122 CONECT 2094 2095 CONECT 2095 2094 2096 2113 CONECT 2096 2095 CONECT 2097 2098 2113 CONECT 2098 2097 2099 CONECT 2099 2085 2098 CONECT 2100 2101 2113 CONECT 2101 2100 2104 2123 CONECT 2102 2103 2114 2123 CONECT 2103 2102 2104 2124 CONECT 2104 2101 2103 2125 CONECT 2105 2114 2115 CONECT 2106 2107 2109 2115 CONECT 2107 2106 2114 2116 CONECT 2108 2116 2117 CONECT 2109 2106 2117 2118 CONECT 2110 2084 CONECT 2111 2083 2085 CONECT 2112 2082 2085 2088 CONECT 2113 2095 2097 2100 CONECT 2114 2102 2105 2107 CONECT 2115 2105 2106 CONECT 2116 2107 2108 CONECT 2117 2108 2109 CONECT 2118 2109 CONECT 2119 2090 CONECT 2120 2091 CONECT 2121 2088 2092 CONECT 2122 2093 CONECT 2123 2101 2102 CONECT 2124 2103 CONECT 2125 2104 MASTER 374 0 2 8 19 0 0 6 2177 1 57 21 END