HEADER ALLERGEN 08-SEP-23 8QHH TITLE NMR SOLUTION STRUCTURE OF THE GREEN KIWI FRUIT ALLERGEN ACT D 8.0101 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BET V 1 RELATED ALLERGEN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINIDIA DELICIOSA; SOURCE 3 ORGANISM_TAXID: 3627; SOURCE 4 GENE: YPR-10; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PR-10 ALLERGEN, ALLERGEN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.ZEINDL,M.TOLLINGER REVDAT 1 08-NOV-23 8QHH 0 JRNL AUTH R.ZEINDL,M.TOLLINGER JRNL TITL NMR RESONANCE ASSIGNMENTS OF THE PR-10 ALLERGENS ACT C 8 AND JRNL TITL 2 ACT D 8 FROM GOLDEN AND GREEN KIWIFRUIT. JRNL REF BIOMOL NMR ASSIGN V. 15 367 2021 JRNL REFN ESSN 1874-270X JRNL PMID 34106433 JRNL DOI 10.1002/PROT.20449 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QHH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292133241. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 15N] GREEN KIWI REMARK 210 FRUIT ALLERGEN ACT D 8.0101, 20 REMARK 210 MM SODIUM PHOSPHATE, 90% H2O/10% REMARK 210 D2O; 0.5 MM [U-99% 13C; U-99% REMARK 210 15N] GREEN KIWI FRUIT ALLERGEN REMARK 210 ACT D 8.0101, 20 MM SODIUM REMARK 210 PHOSPHATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D HNCO; REMARK 210 3D HN(CA)CO; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N TOCSY; 3D (H)CC(CO)NH-TOCSY; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DIRECT DRIVE REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, CCPNMR ANALYSIS, X-PLOR REMARK 210 NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 2 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 ARG A 70 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 2 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 3 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 3 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 4 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 4 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 5 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 5 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 5 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 6 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 7 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 7 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 8 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 8 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 8 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 9 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 9 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 9 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 10 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 10 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 10 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 11 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 11 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 11 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 12 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 13 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 13 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 13 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 14 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 14 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 15 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 15 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 16 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 16 ARG A 70 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 16 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 16 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 17 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 17 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 18 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 18 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 18 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 19 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 20 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 23 -32.57 -138.84 REMARK 500 1 HIS A 36 -73.91 -76.89 REMARK 500 1 GLU A 45 -179.98 -178.97 REMARK 500 1 LYS A 76 6.15 -61.77 REMARK 500 1 ASN A 78 37.99 -144.97 REMARK 500 1 PHE A 79 66.89 -1.37 REMARK 500 1 LYS A 122 46.75 -75.36 REMARK 500 1 CYS A 123 16.62 58.54 REMARK 500 1 ASP A 124 -51.36 -133.48 REMARK 500 1 VAL A 127 124.19 68.93 REMARK 500 2 VAL A 23 -33.68 -134.79 REMARK 500 2 LEU A 44 49.31 -144.22 REMARK 500 2 GLU A 45 177.65 177.35 REMARK 500 2 PHE A 79 62.13 12.72 REMARK 500 2 LYS A 122 49.86 -79.81 REMARK 500 2 ASP A 124 -47.63 -151.43 REMARK 500 2 VAL A 127 109.13 69.07 REMARK 500 2 ASN A 153 62.73 -150.47 REMARK 500 3 SER A 12 42.51 -86.00 REMARK 500 3 VAL A 23 -30.36 -137.19 REMARK 500 3 LEU A 44 58.35 -142.69 REMARK 500 3 GLU A 45 -179.15 175.60 REMARK 500 3 PHE A 79 65.23 0.21 REMARK 500 3 LYS A 122 38.91 -75.48 REMARK 500 3 ASP A 124 -50.06 -141.75 REMARK 500 3 VAL A 127 127.25 66.91 REMARK 500 3 PHE A 143 -9.55 -59.69 REMARK 500 3 ASN A 153 63.82 -155.18 REMARK 500 4 SER A 12 45.14 -81.38 REMARK 500 4 VAL A 23 -35.58 -138.90 REMARK 500 4 LEU A 34 56.68 -150.09 REMARK 500 4 LEU A 44 51.90 -144.34 REMARK 500 4 GLU A 45 -165.61 -170.62 REMARK 500 4 LEU A 74 81.87 -164.47 REMARK 500 4 ASN A 78 26.35 -142.97 REMARK 500 4 PHE A 79 58.74 14.53 REMARK 500 4 CYS A 123 -46.63 65.14 REMARK 500 4 VAL A 127 151.62 67.56 REMARK 500 4 PHE A 143 -8.76 -58.59 REMARK 500 5 SER A 12 34.83 -78.19 REMARK 500 5 VAL A 23 -37.48 -139.02 REMARK 500 5 LEU A 34 59.85 -141.25 REMARK 500 5 ALA A 37 -31.29 -135.34 REMARK 500 5 GLU A 45 -169.01 -177.90 REMARK 500 5 LYS A 76 0.98 -65.19 REMARK 500 5 PHE A 79 60.93 7.82 REMARK 500 5 LYS A 122 49.67 -76.98 REMARK 500 5 CYS A 123 15.09 54.31 REMARK 500 5 ASP A 124 -30.86 -133.09 REMARK 500 5 VAL A 127 152.41 61.82 REMARK 500 REMARK 500 THIS ENTRY HAS 182 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 3 THR A 4 2 -146.37 REMARK 500 GLU A 45 GLY A 46 3 149.72 REMARK 500 THR A 57 PHE A 58 4 -147.09 REMARK 500 GLU A 45 GLY A 46 5 148.39 REMARK 500 GLY A 88 GLY A 89 5 -145.12 REMARK 500 ASP A 47 GLY A 48 7 149.82 REMARK 500 ASN A 78 PHE A 79 9 -146.98 REMARK 500 LEU A 91 ASP A 92 11 149.96 REMARK 500 GLU A 45 GLY A 46 13 149.12 REMARK 500 GLU A 45 GLY A 46 16 149.66 REMARK 500 LEU A 91 ASP A 92 18 148.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 TYR A 149 0.07 SIDE CHAIN REMARK 500 15 ARG A 70 0.08 SIDE CHAIN REMARK 500 17 TYR A 81 0.07 SIDE CHAIN REMARK 500 19 TYR A 99 0.07 SIDE CHAIN REMARK 500 20 ARG A 70 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 50812 RELATED DB: BMRB REMARK 900 RELATED ID: 50811 RELATED DB: BMRB DBREF 8QHH A 1 156 UNP D1YSM5 D1YSM5_ACTDE 2 157 SEQRES 1 A 156 GLY ALA ILE THR TYR ASP MET GLU ILE PRO SER SER ILE SEQRES 2 A 156 SER ALA GLU LYS MET PHE LYS ALA PHE VAL LEU ASP GLY SEQRES 3 A 156 ASP THR ILE ILE PRO LYS ALA LEU PRO HIS ALA ILE THR SEQRES 4 A 156 GLY VAL GLN THR LEU GLU GLY ASP GLY GLY VAL GLY THR SEQRES 5 A 156 ILE LYS LEU THR THR PHE GLY GLU GLY SER VAL HIS LYS SEQRES 6 A 156 SER VAL LYS HIS ARG ILE ASP GLY LEU ASP LYS GLU ASN SEQRES 7 A 156 PHE THR TYR SER TYR SER ILE ILE GLU GLY GLY ALA LEU SEQRES 8 A 156 ASP VAL PHE GLU SER ILE SER TYR HIS ILE LYS ILE VAL SEQRES 9 A 156 ALA THR PRO ASP GLY GLY CYS ILE CYS LYS ASN ARG SER SEQRES 10 A 156 ILE TYR THR PRO LYS CYS ASP ALA GLN VAL SER GLU GLU SEQRES 11 A 156 GLU ILE LYS ALA GLY LYS GLU ARG ALA SER GLY ILE PHE SEQRES 12 A 156 LYS LYS VAL GLU ALA TYR LEU LEU ALA ASN PRO ASP CYS HELIX 1 AA1 SER A 14 VAL A 23 1 10 HELIX 2 AA2 ASP A 25 LEU A 34 1 10 HELIX 3 AA3 GLY A 89 VAL A 93 1 5 HELIX 4 AA4 SER A 128 ASN A 153 1 26 SHEET 1 AA1 7 ILE A 3 SER A 11 0 SHEET 2 AA1 7 CYS A 111 PRO A 121 -1 O CYS A 113 N ILE A 9 SHEET 3 AA1 7 PHE A 94 ALA A 105 -1 N SER A 98 O ILE A 118 SHEET 4 AA1 7 THR A 80 GLY A 88 -1 N TYR A 81 O ILE A 101 SHEET 5 AA1 7 SER A 66 ASP A 75 -1 N LYS A 68 O GLU A 87 SHEET 6 AA1 7 THR A 52 PHE A 58 -1 N LYS A 54 O HIS A 69 SHEET 7 AA1 7 ILE A 38 THR A 43 -1 N GLN A 42 O LEU A 55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 TER 2359 CYS A 156 ENDMDL MODEL 2 TER 2359 CYS A 156 ENDMDL MODEL 3 TER 2359 CYS A 156 ENDMDL MODEL 4 TER 2359 CYS A 156 ENDMDL MODEL 5 TER 2359 CYS A 156 ENDMDL MODEL 6 TER 2359 CYS A 156 ENDMDL MODEL 7 TER 2359 CYS A 156 ENDMDL MODEL 8 TER 2359 CYS A 156 ENDMDL MODEL 9 TER 2359 CYS A 156 ENDMDL MODEL 10 TER 2359 CYS A 156 ENDMDL MODEL 11 TER 2359 CYS A 156 ENDMDL MODEL 12 TER 2359 CYS A 156 ENDMDL MODEL 13 TER 2359 CYS A 156 ENDMDL MODEL 14 TER 2359 CYS A 156 ENDMDL MODEL 15 TER 2359 CYS A 156 ENDMDL MODEL 16 TER 2359 CYS A 156 ENDMDL MODEL 17 TER 2359 CYS A 156 ENDMDL MODEL 18 TER 2359 CYS A 156 ENDMDL MODEL 19 TER 2359 CYS A 156 ENDMDL MODEL 20 TER 2359 CYS A 156 ENDMDL MASTER 259 0 0 4 7 0 0 6 1179 1 0 12 END