HEADER HYDROLASE 09-SEP-23 8QHQ TITLE CRYSTAL STRUCTURE OF HUMAN DNPH1 BOUND TO HMDUMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2'-DEOXYNUCLEOSIDE 5'-PHOSPHATE N-HYDROLASE 1; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: C-MYC-RESPONSIVE PROTEIN RCL; COMPND 5 EC: 3.2.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DNPH1, C6ORF108, RCL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNPH1 N-GLYCOSIDASE HMDUMP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.J.RZECHORZEK,S.C.WEST REVDAT 1 08-NOV-23 8QHQ 0 JRNL AUTH N.J.RZECHORZEK,S.KUNZELMANN,A.G.PURKISS,M.SILVA DOS SANTOS, JRNL AUTH 2 J.I.MACRAE,I.A.TAYLOR,K.FUGGER,S.C.WEST JRNL TITL MECHANISM OF SUBSTRATE HYDROLYSIS BY THE HUMAN NUCLEOTIDE JRNL TITL 2 POOL SANITISER DNPH1. JRNL REF NAT COMMUN V. 14 6809 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37884503 JRNL DOI 10.1038/S41467-023-42544-4 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 79802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 3817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.8500 - 5.3300 0.98 3100 166 0.2041 0.1949 REMARK 3 2 5.3200 - 4.2300 1.00 3050 171 0.1523 0.1782 REMARK 3 3 4.2300 - 3.6900 1.00 3072 153 0.1534 0.1881 REMARK 3 4 3.6900 - 3.3600 1.00 2987 174 0.1731 0.1773 REMARK 3 5 3.3500 - 3.1100 1.00 3043 154 0.1852 0.2045 REMARK 3 6 3.1100 - 2.9300 1.00 2990 165 0.1932 0.2008 REMARK 3 7 2.9300 - 2.7800 1.00 3069 147 0.1974 0.2410 REMARK 3 8 2.7800 - 2.6600 1.00 3040 127 0.2067 0.2599 REMARK 3 9 2.6600 - 2.5600 1.00 3019 153 0.2078 0.2502 REMARK 3 10 2.5600 - 2.4700 1.00 3013 150 0.2081 0.2240 REMARK 3 11 2.4700 - 2.3900 1.00 3021 152 0.2039 0.2417 REMARK 3 12 2.3900 - 2.3300 0.99 3030 152 0.2113 0.2345 REMARK 3 13 2.3300 - 2.2700 1.00 2971 162 0.2166 0.2260 REMARK 3 14 2.2700 - 2.2100 0.55 1683 74 0.2632 0.3830 REMARK 3 15 2.2100 - 2.1600 0.99 3016 118 0.2357 0.2595 REMARK 3 16 2.1600 - 2.1100 0.99 3025 134 0.2398 0.2795 REMARK 3 17 2.1100 - 2.0700 0.98 2739 128 0.2581 0.2385 REMARK 3 18 2.0500 - 2.0300 0.89 1427 56 0.2795 0.3084 REMARK 3 19 2.0300 - 2.0000 0.99 3012 168 0.2640 0.2766 REMARK 3 20 2.0000 - 1.9600 1.00 2987 148 0.2738 0.3166 REMARK 3 21 1.9600 - 1.9300 0.98 2986 160 0.2872 0.3304 REMARK 3 22 1.9300 - 1.9000 0.98 2968 137 0.3081 0.3399 REMARK 3 23 1.9000 - 1.8700 0.96 2891 151 0.3202 0.3394 REMARK 3 24 1.8700 - 1.8500 0.92 2799 133 0.3379 0.3629 REMARK 3 25 1.8500 - 1.8200 0.86 2523 135 0.3506 0.3095 REMARK 3 26 1.8200 - 1.8000 0.78 2377 129 0.3724 0.3853 REMARK 3 27 1.8000 - 1.7800 0.72 2147 120 0.3884 0.4291 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.237 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.517 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7138 REMARK 3 ANGLE : 0.560 9672 REMARK 3 CHIRALITY : 0.038 1014 REMARK 3 PLANARITY : 0.005 1287 REMARK 3 DIHEDRAL : 5.939 1077 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 30 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6999 9.5974 35.2696 REMARK 3 T TENSOR REMARK 3 T11: 0.2095 T22: 0.3015 REMARK 3 T33: 0.4783 T12: 0.0019 REMARK 3 T13: 0.0063 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 2.2317 L22: 0.7169 REMARK 3 L33: 1.5722 L12: 0.3297 REMARK 3 L13: 1.0881 L23: 0.2434 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: 0.4963 S13: 0.3881 REMARK 3 S21: -0.0908 S22: -0.0110 S23: -0.1142 REMARK 3 S31: -0.1264 S32: 0.0416 S33: -0.0346 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9552 14.4669 25.2558 REMARK 3 T TENSOR REMARK 3 T11: 0.3979 T22: 0.6287 REMARK 3 T33: 0.7201 T12: 0.1138 REMARK 3 T13: 0.1828 T23: 0.2655 REMARK 3 L TENSOR REMARK 3 L11: 0.1146 L22: 0.4219 REMARK 3 L33: 0.4009 L12: 0.0179 REMARK 3 L13: 0.0990 L23: 0.3816 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: 0.2031 S13: 0.6559 REMARK 3 S21: -0.5612 S22: -0.3182 S23: 0.2116 REMARK 3 S31: 0.1585 S32: -0.2140 S33: 0.0621 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6094 1.2781 35.9995 REMARK 3 T TENSOR REMARK 3 T11: 0.2272 T22: 0.3371 REMARK 3 T33: 0.5132 T12: 0.0026 REMARK 3 T13: 0.0030 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 1.9634 L22: 0.7532 REMARK 3 L33: 0.7959 L12: 0.0141 REMARK 3 L13: -0.0942 L23: 0.0887 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: 0.3228 S13: -0.0714 REMARK 3 S21: -0.0594 S22: 0.0765 S23: -0.1355 REMARK 3 S31: 0.0934 S32: 0.0192 S33: -0.0305 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0633 7.3750 48.6407 REMARK 3 T TENSOR REMARK 3 T11: 0.1838 T22: 0.3016 REMARK 3 T33: 0.4124 T12: 0.0244 REMARK 3 T13: -0.0282 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 2.2687 L22: 1.1015 REMARK 3 L33: 2.1612 L12: 0.3063 REMARK 3 L13: -0.4624 L23: 0.6639 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: -0.3279 S13: -0.1685 REMARK 3 S21: 0.2033 S22: 0.0523 S23: -0.4056 REMARK 3 S31: 0.1227 S32: 0.2984 S33: -0.0115 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0164 9.8926 48.4559 REMARK 3 T TENSOR REMARK 3 T11: 0.2325 T22: 0.3577 REMARK 3 T33: 0.5487 T12: -0.0113 REMARK 3 T13: -0.0118 T23: -0.0838 REMARK 3 L TENSOR REMARK 3 L11: 1.8406 L22: 0.7407 REMARK 3 L33: 1.3428 L12: -0.2788 REMARK 3 L13: -0.6606 L23: -0.2187 REMARK 3 S TENSOR REMARK 3 S11: 0.0573 S12: -0.3759 S13: 0.5752 REMARK 3 S21: 0.1460 S22: -0.0658 S23: -0.1940 REMARK 3 S31: -0.0230 S32: 0.0642 S33: 0.0593 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0658 3.7194 47.0527 REMARK 3 T TENSOR REMARK 3 T11: 0.1930 T22: 0.2380 REMARK 3 T33: 0.3833 T12: 0.0117 REMARK 3 T13: 0.0089 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 2.0073 L22: 0.6998 REMARK 3 L33: 1.4014 L12: -0.4347 REMARK 3 L13: 0.3093 L23: 0.5990 REMARK 3 S TENSOR REMARK 3 S11: 0.0854 S12: -0.2229 S13: -0.0979 REMARK 3 S21: 0.1706 S22: -0.0897 S23: 0.1503 REMARK 3 S31: 0.1441 S32: -0.0785 S33: 0.0136 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8246 12.6043 56.7926 REMARK 3 T TENSOR REMARK 3 T11: 0.3288 T22: 0.4738 REMARK 3 T33: 0.5516 T12: 0.0344 REMARK 3 T13: 0.0102 T23: -0.0756 REMARK 3 L TENSOR REMARK 3 L11: 2.1673 L22: 2.0254 REMARK 3 L33: 2.3928 L12: -0.6441 REMARK 3 L13: 0.4112 L23: -0.3087 REMARK 3 S TENSOR REMARK 3 S11: -0.2050 S12: -0.8646 S13: 0.5147 REMARK 3 S21: 0.2867 S22: 0.0924 S23: 0.3255 REMARK 3 S31: -0.3989 S32: -0.0855 S33: 0.0191 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5939 -3.4283 53.8235 REMARK 3 T TENSOR REMARK 3 T11: 0.2560 T22: 0.3392 REMARK 3 T33: 0.4904 T12: 0.0053 REMARK 3 T13: 0.0050 T23: 0.0944 REMARK 3 L TENSOR REMARK 3 L11: 1.9619 L22: 1.7908 REMARK 3 L33: 2.4893 L12: 0.0436 REMARK 3 L13: 0.7340 L23: 1.3461 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: -0.2591 S13: -0.4942 REMARK 3 S21: 0.1485 S22: 0.0847 S23: -0.0949 REMARK 3 S31: 0.3116 S32: 0.2172 S33: -0.0707 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8217 1.2980 42.0294 REMARK 3 T TENSOR REMARK 3 T11: 0.1812 T22: 0.2176 REMARK 3 T33: 0.3540 T12: 0.0016 REMARK 3 T13: 0.0041 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.4632 L22: 0.8663 REMARK 3 L33: 0.9641 L12: -0.5116 REMARK 3 L13: -0.4073 L23: 0.3681 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: 0.1029 S13: 0.0920 REMARK 3 S21: -0.0306 S22: 0.0337 S23: 0.1347 REMARK 3 S31: 0.0962 S32: -0.0126 S33: -0.0253 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8568 2.6042 33.3589 REMARK 3 T TENSOR REMARK 3 T11: 0.1784 T22: 0.3190 REMARK 3 T33: 0.4131 T12: -0.0093 REMARK 3 T13: -0.0274 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 2.2003 L22: 1.0498 REMARK 3 L33: 2.0711 L12: 0.0518 REMARK 3 L13: -0.1991 L23: -0.1963 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: 0.4448 S13: -0.0733 REMARK 3 S21: -0.1499 S22: 0.0993 S23: 0.2391 REMARK 3 S31: 0.0559 S32: -0.0385 S33: -0.0790 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 147 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4329 -0.0103 35.6258 REMARK 3 T TENSOR REMARK 3 T11: 0.2476 T22: 0.3192 REMARK 3 T33: 0.4471 T12: 0.0191 REMARK 3 T13: -0.0183 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 4.5403 L22: 0.7930 REMARK 3 L33: 4.6595 L12: 1.0202 REMARK 3 L13: 0.2966 L23: -0.3653 REMARK 3 S TENSOR REMARK 3 S11: 0.1295 S12: 0.5055 S13: -0.3008 REMARK 3 S21: -0.4062 S22: -0.1520 S23: 0.1638 REMARK 3 S31: 0.3281 S32: -0.1067 S33: 0.0013 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 18 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0380 42.5841 34.3502 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.2303 REMARK 3 T33: 0.4056 T12: -0.0105 REMARK 3 T13: 0.0267 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 1.9170 L22: 0.8966 REMARK 3 L33: 0.8233 L12: 0.0771 REMARK 3 L13: 0.5151 L23: 0.2278 REMARK 3 S TENSOR REMARK 3 S11: 0.0619 S12: 0.1674 S13: 0.2033 REMARK 3 S21: -0.1082 S22: -0.0337 S23: 0.0792 REMARK 3 S31: -0.1108 S32: 0.0807 S33: -0.0419 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 59 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2516 38.9459 40.8535 REMARK 3 T TENSOR REMARK 3 T11: 0.1666 T22: 0.2016 REMARK 3 T33: 0.3308 T12: 0.0156 REMARK 3 T13: 0.0281 T23: 0.0439 REMARK 3 L TENSOR REMARK 3 L11: 3.7214 L22: 1.6561 REMARK 3 L33: 1.7509 L12: 0.2170 REMARK 3 L13: 0.2186 L23: 0.5626 REMARK 3 S TENSOR REMARK 3 S11: -0.0361 S12: -0.1217 S13: 0.0368 REMARK 3 S21: -0.0691 S22: 0.0630 S23: -0.1321 REMARK 3 S31: -0.0482 S32: 0.0601 S33: -0.0109 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 20 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4484 36.7762 45.9661 REMARK 3 T TENSOR REMARK 3 T11: 0.2068 T22: 0.2927 REMARK 3 T33: 0.3291 T12: 0.0264 REMARK 3 T13: -0.0089 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 2.4265 L22: 0.9264 REMARK 3 L33: 1.5867 L12: 0.4655 REMARK 3 L13: -0.6422 L23: 0.5180 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: -0.4874 S13: 0.0908 REMARK 3 S21: 0.0439 S22: -0.1776 S23: -0.1459 REMARK 3 S31: 0.0693 S32: 0.0337 S33: 0.1771 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 59 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1911 45.9127 55.7126 REMARK 3 T TENSOR REMARK 3 T11: 0.4576 T22: 0.6887 REMARK 3 T33: 0.7883 T12: 0.0140 REMARK 3 T13: 0.0157 T23: -0.0961 REMARK 3 L TENSOR REMARK 3 L11: 1.4910 L22: 3.0419 REMARK 3 L33: 3.2863 L12: -0.1986 REMARK 3 L13: 0.1317 L23: -0.5973 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: -0.8050 S13: 0.5511 REMARK 3 S21: 0.4347 S22: -0.0966 S23: 0.0657 REMARK 3 S31: -0.5753 S32: 0.5358 S33: 0.1488 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 74 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1101 34.0601 41.5090 REMARK 3 T TENSOR REMARK 3 T11: 0.1384 T22: 0.2295 REMARK 3 T33: 0.2932 T12: 0.0147 REMARK 3 T13: 0.0090 T23: 0.0626 REMARK 3 L TENSOR REMARK 3 L11: 2.0745 L22: 1.4854 REMARK 3 L33: 1.0864 L12: 0.0320 REMARK 3 L13: -0.5070 L23: -0.0975 REMARK 3 S TENSOR REMARK 3 S11: -0.1138 S12: -0.2168 S13: -0.2369 REMARK 3 S21: 0.0966 S22: 0.0053 S23: 0.0293 REMARK 3 S31: 0.1248 S32: 0.0694 S33: 0.1198 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 129 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6661 30.3829 30.3415 REMARK 3 T TENSOR REMARK 3 T11: 0.2981 T22: 0.3249 REMARK 3 T33: 0.3789 T12: -0.0026 REMARK 3 T13: 0.0104 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 2.3975 L22: 6.0808 REMARK 3 L33: 3.1869 L12: 2.5961 REMARK 3 L13: -1.2136 L23: -2.2504 REMARK 3 S TENSOR REMARK 3 S11: -0.2251 S12: 0.4238 S13: -0.7184 REMARK 3 S21: -0.3105 S22: 0.2779 S23: -0.2168 REMARK 3 S31: 0.5362 S32: -0.4023 S33: 0.0059 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 140 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4118 34.2746 33.0095 REMARK 3 T TENSOR REMARK 3 T11: 0.2000 T22: 0.2789 REMARK 3 T33: 0.3414 T12: -0.0166 REMARK 3 T13: -0.0358 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 2.3051 L22: 0.9497 REMARK 3 L33: 1.3423 L12: -0.3302 REMARK 3 L13: -0.6037 L23: -0.1382 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: 0.1931 S13: 0.0148 REMARK 3 S21: -0.0256 S22: 0.0122 S23: -0.0869 REMARK 3 S31: 0.0502 S32: -0.1771 S33: -0.0092 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 20 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6162 38.0772 12.1252 REMARK 3 T TENSOR REMARK 3 T11: 0.4622 T22: 0.2511 REMARK 3 T33: 0.2860 T12: -0.0202 REMARK 3 T13: -0.0645 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 2.2470 L22: 1.3985 REMARK 3 L33: 2.8227 L12: -0.0919 REMARK 3 L13: -0.4111 L23: 0.0740 REMARK 3 S TENSOR REMARK 3 S11: -0.0482 S12: 0.0486 S13: -0.1264 REMARK 3 S21: 0.4631 S22: 0.2168 S23: -0.3510 REMARK 3 S31: -0.0884 S32: 0.1441 S33: -0.1174 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 36 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6029 38.9000 18.9225 REMARK 3 T TENSOR REMARK 3 T11: 0.3700 T22: 0.3572 REMARK 3 T33: 0.3635 T12: -0.0010 REMARK 3 T13: -0.0922 T23: -0.0835 REMARK 3 L TENSOR REMARK 3 L11: 2.8026 L22: 2.6094 REMARK 3 L33: 3.0519 L12: -1.6924 REMARK 3 L13: -1.2358 L23: 0.5718 REMARK 3 S TENSOR REMARK 3 S11: -0.1490 S12: -0.1361 S13: 0.3364 REMARK 3 S21: 0.0826 S22: 0.3440 S23: -0.7253 REMARK 3 S31: 0.0893 S32: 0.6014 S33: -0.2661 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 72 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6377 30.8868 7.5346 REMARK 3 T TENSOR REMARK 3 T11: 0.3507 T22: 0.2602 REMARK 3 T33: 0.2795 T12: 0.0086 REMARK 3 T13: -0.0582 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.0899 L22: 1.0515 REMARK 3 L33: 1.9407 L12: 0.3904 REMARK 3 L13: -0.8677 L23: -0.1336 REMARK 3 S TENSOR REMARK 3 S11: -0.0327 S12: -0.1620 S13: -0.1254 REMARK 3 S21: 0.0550 S22: 0.0441 S23: -0.2867 REMARK 3 S31: 0.3257 S32: 0.2882 S33: -0.0355 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 120 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9274 38.4011 5.1266 REMARK 3 T TENSOR REMARK 3 T11: 0.3145 T22: 0.3477 REMARK 3 T33: 0.2724 T12: -0.0426 REMARK 3 T13: -0.0785 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 2.5716 L22: 0.2652 REMARK 3 L33: 3.4153 L12: -0.5492 REMARK 3 L13: -1.4597 L23: 0.6265 REMARK 3 S TENSOR REMARK 3 S11: 0.1325 S12: 0.2628 S13: -0.1831 REMARK 3 S21: 0.0257 S22: -0.1015 S23: 0.0699 REMARK 3 S31: 0.2196 S32: -0.8486 S33: -0.0566 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 147 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2645 36.8762 18.7308 REMARK 3 T TENSOR REMARK 3 T11: 0.4150 T22: 0.4555 REMARK 3 T33: 0.3485 T12: -0.0957 REMARK 3 T13: -0.0556 T23: -0.0836 REMARK 3 L TENSOR REMARK 3 L11: 4.4314 L22: 4.5432 REMARK 3 L33: 4.4877 L12: -0.8656 REMARK 3 L13: 0.1564 L23: 0.8872 REMARK 3 S TENSOR REMARK 3 S11: -0.1838 S12: -0.1276 S13: -0.2587 REMARK 3 S21: 0.3811 S22: -0.0324 S23: 0.4956 REMARK 3 S31: 0.4908 S32: -0.8958 S33: 0.0905 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 20 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0856 5.5078 12.8799 REMARK 3 T TENSOR REMARK 3 T11: 0.3945 T22: 0.2758 REMARK 3 T33: 0.2909 T12: 0.0221 REMARK 3 T13: -0.0342 T23: -0.0491 REMARK 3 L TENSOR REMARK 3 L11: 2.1396 L22: 1.8110 REMARK 3 L33: 1.4845 L12: 0.3311 REMARK 3 L13: 0.0612 L23: 0.2189 REMARK 3 S TENSOR REMARK 3 S11: 0.0679 S12: -0.2026 S13: -0.0608 REMARK 3 S21: 0.5283 S22: 0.0787 S23: -0.3178 REMARK 3 S31: -0.1817 S32: 0.3856 S33: -0.1644 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 36 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1402 8.0407 20.7442 REMARK 3 T TENSOR REMARK 3 T11: 0.3522 T22: 0.2815 REMARK 3 T33: 0.3406 T12: 0.0288 REMARK 3 T13: -0.0557 T23: -0.0608 REMARK 3 L TENSOR REMARK 3 L11: 3.1621 L22: 2.8907 REMARK 3 L33: 6.6320 L12: 0.3935 REMARK 3 L13: -2.0750 L23: -2.0352 REMARK 3 S TENSOR REMARK 3 S11: 0.1559 S12: -0.3045 S13: 0.2501 REMARK 3 S21: 0.5690 S22: 0.0392 S23: -0.3263 REMARK 3 S31: -1.2115 S32: 0.0854 S33: -0.2482 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 49 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2607 3.3544 18.7219 REMARK 3 T TENSOR REMARK 3 T11: 0.2903 T22: 0.4467 REMARK 3 T33: 0.6003 T12: 0.0137 REMARK 3 T13: -0.1167 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 2.1614 L22: 2.6603 REMARK 3 L33: 6.8212 L12: 0.4598 REMARK 3 L13: -3.4537 L23: 0.3433 REMARK 3 S TENSOR REMARK 3 S11: -0.3026 S12: -0.4886 S13: 0.8573 REMARK 3 S21: 0.4808 S22: 0.2724 S23: -0.8408 REMARK 3 S31: 0.2633 S32: 0.8205 S33: -0.0024 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 72 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7343 -4.6018 10.0055 REMARK 3 T TENSOR REMARK 3 T11: 0.4758 T22: 0.4492 REMARK 3 T33: 0.3334 T12: 0.1692 REMARK 3 T13: -0.0798 T23: -0.0596 REMARK 3 L TENSOR REMARK 3 L11: 3.0925 L22: 4.8643 REMARK 3 L33: 2.6342 L12: 1.2565 REMARK 3 L13: -1.5202 L23: -1.0561 REMARK 3 S TENSOR REMARK 3 S11: -0.2429 S12: -0.7210 S13: -0.4863 REMARK 3 S21: 0.1548 S22: 0.1476 S23: -0.8919 REMARK 3 S31: 0.7651 S32: 0.8347 S33: -0.0001 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 87 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5888 0.3160 6.7587 REMARK 3 T TENSOR REMARK 3 T11: 0.4021 T22: 0.2462 REMARK 3 T33: 0.2980 T12: 0.0177 REMARK 3 T13: -0.0656 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 2.2006 L22: 1.0928 REMARK 3 L33: 1.8348 L12: -0.9970 REMARK 3 L13: -0.4565 L23: 0.6380 REMARK 3 S TENSOR REMARK 3 S11: 0.1257 S12: 0.2816 S13: -0.0750 REMARK 3 S21: -0.0070 S22: -0.0358 S23: -0.0286 REMARK 3 S31: 0.4726 S32: -0.2792 S33: -0.0501 REMARK 3 TLS GROUP : 29 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 111 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9139 3.0064 6.7981 REMARK 3 T TENSOR REMARK 3 T11: 0.3285 T22: 0.3153 REMARK 3 T33: 0.3042 T12: -0.0407 REMARK 3 T13: -0.0545 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.5427 L22: 1.9915 REMARK 3 L33: 3.6341 L12: -0.7322 REMARK 3 L13: -1.1015 L23: 0.1500 REMARK 3 S TENSOR REMARK 3 S11: 0.1015 S12: 0.2217 S13: 0.0170 REMARK 3 S21: -0.0468 S22: 0.0120 S23: 0.3441 REMARK 3 S31: 0.3498 S32: -0.7606 S33: -0.1258 REMARK 3 TLS GROUP : 30 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 147 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5369 3.9112 19.6096 REMARK 3 T TENSOR REMARK 3 T11: 0.4118 T22: 0.5344 REMARK 3 T33: 0.4122 T12: -0.0683 REMARK 3 T13: -0.0453 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 4.8537 L22: 5.9388 REMARK 3 L33: 5.2221 L12: -0.7946 REMARK 3 L13: 0.4315 L23: 0.2085 REMARK 3 S TENSOR REMARK 3 S11: -0.3405 S12: 0.1274 S13: -0.1125 REMARK 3 S21: -0.4407 S22: 0.4032 S23: 0.6086 REMARK 3 S31: 0.3151 S32: -1.1293 S33: -0.0524 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292132787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS FEB 5, 2021 REMARK 200 DATA SCALING SOFTWARE : POINTLESS 1.12.8, AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80370 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.775 REMARK 200 RESOLUTION RANGE LOW (A) : 59.212 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM FLUORIDE, 0.1 M BIS-TRIS REMARK 280 PROPANE PH 6.5, 20% W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.56300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 33.56300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 ALA A 69 REMARK 465 ALA A 70 REMARK 465 GLY B 16 REMARK 465 SER B 17 REMARK 465 MET B 18 REMARK 465 PRO B 162 REMARK 465 GLY C 16 REMARK 465 SER C 17 REMARK 465 GLU C 68 REMARK 465 ALA C 69 REMARK 465 GLY D 16 REMARK 465 SER D 17 REMARK 465 MET D 18 REMARK 465 GLY D 19 REMARK 465 ALA D 160 REMARK 465 ASP D 161 REMARK 465 PRO D 162 REMARK 465 GLY E 16 REMARK 465 SER E 17 REMARK 465 MET E 18 REMARK 465 GLY E 19 REMARK 465 LEU E 62 REMARK 465 GLY E 63 REMARK 465 ALA E 64 REMARK 465 ARG E 65 REMARK 465 GLY E 66 REMARK 465 GLU E 67 REMARK 465 GLU E 68 REMARK 465 ALA E 69 REMARK 465 ALA E 70 REMARK 465 ASP E 161 REMARK 465 PRO E 162 REMARK 465 GLY F 16 REMARK 465 SER F 17 REMARK 465 MET F 18 REMARK 465 GLY F 19 REMARK 465 LEU F 62 REMARK 465 GLY F 63 REMARK 465 ALA F 64 REMARK 465 ARG F 65 REMARK 465 GLY F 66 REMARK 465 GLU F 67 REMARK 465 GLU F 68 REMARK 465 ALA F 69 REMARK 465 ALA F 70 REMARK 465 ASP F 161 REMARK 465 PRO F 162 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 361 O HOH C 382 2.05 REMARK 500 O HOH D 385 O HOH D 395 2.13 REMARK 500 O HOH B 370 O HOH B 393 2.14 REMARK 500 O ARG B 20 O HOH B 301 2.17 REMARK 500 O HOH C 313 O HOH C 380 2.17 REMARK 500 O HOH D 359 O HOH D 367 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 29 -72.43 -120.08 REMARK 500 ILE B 29 -73.61 -117.15 REMARK 500 SER B 138 -81.17 -125.15 REMARK 500 ILE C 29 -74.02 -115.55 REMARK 500 ILE D 29 -74.10 -116.98 REMARK 500 SER D 138 -82.65 -133.02 REMARK 500 ILE E 29 -76.89 -121.58 REMARK 500 THR E 54 40.86 -108.18 REMARK 500 SER E 138 -77.72 -134.04 REMARK 500 GLU E 147 -36.39 -39.09 REMARK 500 GLU E 147 -36.39 -39.13 REMARK 500 ILE F 29 -73.00 -119.84 REMARK 500 SER F 138 -79.53 -126.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8QHR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN DNPH1 GLYCOSYL-ENZYME INTERMEDIATE DBREF 8QHQ A 19 162 UNP O43598 DNPH1_HUMAN 19 162 DBREF 8QHQ B 19 162 UNP O43598 DNPH1_HUMAN 19 162 DBREF 8QHQ C 19 162 UNP O43598 DNPH1_HUMAN 19 162 DBREF 8QHQ D 19 162 UNP O43598 DNPH1_HUMAN 19 162 DBREF 8QHQ E 19 162 UNP O43598 DNPH1_HUMAN 19 162 DBREF 8QHQ F 19 162 UNP O43598 DNPH1_HUMAN 19 162 SEQADV 8QHQ GLY A 16 UNP O43598 EXPRESSION TAG SEQADV 8QHQ SER A 17 UNP O43598 EXPRESSION TAG SEQADV 8QHQ MET A 18 UNP O43598 EXPRESSION TAG SEQADV 8QHQ GLN A 104 UNP O43598 GLU 104 ENGINEERED MUTATION SEQADV 8QHQ GLY B 16 UNP O43598 EXPRESSION TAG SEQADV 8QHQ SER B 17 UNP O43598 EXPRESSION TAG SEQADV 8QHQ MET B 18 UNP O43598 EXPRESSION TAG SEQADV 8QHQ GLN B 104 UNP O43598 GLU 104 ENGINEERED MUTATION SEQADV 8QHQ GLY C 16 UNP O43598 EXPRESSION TAG SEQADV 8QHQ SER C 17 UNP O43598 EXPRESSION TAG SEQADV 8QHQ MET C 18 UNP O43598 EXPRESSION TAG SEQADV 8QHQ GLN C 104 UNP O43598 GLU 104 ENGINEERED MUTATION SEQADV 8QHQ GLY D 16 UNP O43598 EXPRESSION TAG SEQADV 8QHQ SER D 17 UNP O43598 EXPRESSION TAG SEQADV 8QHQ MET D 18 UNP O43598 EXPRESSION TAG SEQADV 8QHQ GLN D 104 UNP O43598 GLU 104 ENGINEERED MUTATION SEQADV 8QHQ GLY E 16 UNP O43598 EXPRESSION TAG SEQADV 8QHQ SER E 17 UNP O43598 EXPRESSION TAG SEQADV 8QHQ MET E 18 UNP O43598 EXPRESSION TAG SEQADV 8QHQ GLN E 104 UNP O43598 GLU 104 ENGINEERED MUTATION SEQADV 8QHQ GLY F 16 UNP O43598 EXPRESSION TAG SEQADV 8QHQ SER F 17 UNP O43598 EXPRESSION TAG SEQADV 8QHQ MET F 18 UNP O43598 EXPRESSION TAG SEQADV 8QHQ GLN F 104 UNP O43598 GLU 104 ENGINEERED MUTATION SEQRES 1 A 147 GLY SER MET GLY ARG PRO ALA LEU TYR PHE CYS GLY SER SEQRES 2 A 147 ILE ARG GLY GLY ARG GLU ASP ARG THR LEU TYR GLU ARG SEQRES 3 A 147 ILE VAL SER ARG LEU ARG ARG PHE GLY THR VAL LEU THR SEQRES 4 A 147 GLU HIS VAL ALA ALA ALA GLU LEU GLY ALA ARG GLY GLU SEQRES 5 A 147 GLU ALA ALA GLY GLY ASP ARG LEU ILE HIS GLU GLN ASP SEQRES 6 A 147 LEU GLU TRP LEU GLN GLN ALA ASP VAL VAL VAL ALA GLU SEQRES 7 A 147 VAL THR GLN PRO SER LEU GLY VAL GLY TYR GLN LEU GLY SEQRES 8 A 147 ARG ALA VAL ALA PHE ASN LYS ARG ILE LEU CYS LEU PHE SEQRES 9 A 147 ARG PRO GLN SER GLY ARG VAL LEU SER ALA MET ILE ARG SEQRES 10 A 147 GLY ALA ALA ASP GLY SER ARG PHE GLN VAL TRP ASP TYR SEQRES 11 A 147 GLU GLU GLY GLU VAL GLU ALA LEU LEU ASP ARG TYR PHE SEQRES 12 A 147 GLU ALA ASP PRO SEQRES 1 B 147 GLY SER MET GLY ARG PRO ALA LEU TYR PHE CYS GLY SER SEQRES 2 B 147 ILE ARG GLY GLY ARG GLU ASP ARG THR LEU TYR GLU ARG SEQRES 3 B 147 ILE VAL SER ARG LEU ARG ARG PHE GLY THR VAL LEU THR SEQRES 4 B 147 GLU HIS VAL ALA ALA ALA GLU LEU GLY ALA ARG GLY GLU SEQRES 5 B 147 GLU ALA ALA GLY GLY ASP ARG LEU ILE HIS GLU GLN ASP SEQRES 6 B 147 LEU GLU TRP LEU GLN GLN ALA ASP VAL VAL VAL ALA GLU SEQRES 7 B 147 VAL THR GLN PRO SER LEU GLY VAL GLY TYR GLN LEU GLY SEQRES 8 B 147 ARG ALA VAL ALA PHE ASN LYS ARG ILE LEU CYS LEU PHE SEQRES 9 B 147 ARG PRO GLN SER GLY ARG VAL LEU SER ALA MET ILE ARG SEQRES 10 B 147 GLY ALA ALA ASP GLY SER ARG PHE GLN VAL TRP ASP TYR SEQRES 11 B 147 GLU GLU GLY GLU VAL GLU ALA LEU LEU ASP ARG TYR PHE SEQRES 12 B 147 GLU ALA ASP PRO SEQRES 1 C 147 GLY SER MET GLY ARG PRO ALA LEU TYR PHE CYS GLY SER SEQRES 2 C 147 ILE ARG GLY GLY ARG GLU ASP ARG THR LEU TYR GLU ARG SEQRES 3 C 147 ILE VAL SER ARG LEU ARG ARG PHE GLY THR VAL LEU THR SEQRES 4 C 147 GLU HIS VAL ALA ALA ALA GLU LEU GLY ALA ARG GLY GLU SEQRES 5 C 147 GLU ALA ALA GLY GLY ASP ARG LEU ILE HIS GLU GLN ASP SEQRES 6 C 147 LEU GLU TRP LEU GLN GLN ALA ASP VAL VAL VAL ALA GLU SEQRES 7 C 147 VAL THR GLN PRO SER LEU GLY VAL GLY TYR GLN LEU GLY SEQRES 8 C 147 ARG ALA VAL ALA PHE ASN LYS ARG ILE LEU CYS LEU PHE SEQRES 9 C 147 ARG PRO GLN SER GLY ARG VAL LEU SER ALA MET ILE ARG SEQRES 10 C 147 GLY ALA ALA ASP GLY SER ARG PHE GLN VAL TRP ASP TYR SEQRES 11 C 147 GLU GLU GLY GLU VAL GLU ALA LEU LEU ASP ARG TYR PHE SEQRES 12 C 147 GLU ALA ASP PRO SEQRES 1 D 147 GLY SER MET GLY ARG PRO ALA LEU TYR PHE CYS GLY SER SEQRES 2 D 147 ILE ARG GLY GLY ARG GLU ASP ARG THR LEU TYR GLU ARG SEQRES 3 D 147 ILE VAL SER ARG LEU ARG ARG PHE GLY THR VAL LEU THR SEQRES 4 D 147 GLU HIS VAL ALA ALA ALA GLU LEU GLY ALA ARG GLY GLU SEQRES 5 D 147 GLU ALA ALA GLY GLY ASP ARG LEU ILE HIS GLU GLN ASP SEQRES 6 D 147 LEU GLU TRP LEU GLN GLN ALA ASP VAL VAL VAL ALA GLU SEQRES 7 D 147 VAL THR GLN PRO SER LEU GLY VAL GLY TYR GLN LEU GLY SEQRES 8 D 147 ARG ALA VAL ALA PHE ASN LYS ARG ILE LEU CYS LEU PHE SEQRES 9 D 147 ARG PRO GLN SER GLY ARG VAL LEU SER ALA MET ILE ARG SEQRES 10 D 147 GLY ALA ALA ASP GLY SER ARG PHE GLN VAL TRP ASP TYR SEQRES 11 D 147 GLU GLU GLY GLU VAL GLU ALA LEU LEU ASP ARG TYR PHE SEQRES 12 D 147 GLU ALA ASP PRO SEQRES 1 E 147 GLY SER MET GLY ARG PRO ALA LEU TYR PHE CYS GLY SER SEQRES 2 E 147 ILE ARG GLY GLY ARG GLU ASP ARG THR LEU TYR GLU ARG SEQRES 3 E 147 ILE VAL SER ARG LEU ARG ARG PHE GLY THR VAL LEU THR SEQRES 4 E 147 GLU HIS VAL ALA ALA ALA GLU LEU GLY ALA ARG GLY GLU SEQRES 5 E 147 GLU ALA ALA GLY GLY ASP ARG LEU ILE HIS GLU GLN ASP SEQRES 6 E 147 LEU GLU TRP LEU GLN GLN ALA ASP VAL VAL VAL ALA GLU SEQRES 7 E 147 VAL THR GLN PRO SER LEU GLY VAL GLY TYR GLN LEU GLY SEQRES 8 E 147 ARG ALA VAL ALA PHE ASN LYS ARG ILE LEU CYS LEU PHE SEQRES 9 E 147 ARG PRO GLN SER GLY ARG VAL LEU SER ALA MET ILE ARG SEQRES 10 E 147 GLY ALA ALA ASP GLY SER ARG PHE GLN VAL TRP ASP TYR SEQRES 11 E 147 GLU GLU GLY GLU VAL GLU ALA LEU LEU ASP ARG TYR PHE SEQRES 12 E 147 GLU ALA ASP PRO SEQRES 1 F 147 GLY SER MET GLY ARG PRO ALA LEU TYR PHE CYS GLY SER SEQRES 2 F 147 ILE ARG GLY GLY ARG GLU ASP ARG THR LEU TYR GLU ARG SEQRES 3 F 147 ILE VAL SER ARG LEU ARG ARG PHE GLY THR VAL LEU THR SEQRES 4 F 147 GLU HIS VAL ALA ALA ALA GLU LEU GLY ALA ARG GLY GLU SEQRES 5 F 147 GLU ALA ALA GLY GLY ASP ARG LEU ILE HIS GLU GLN ASP SEQRES 6 F 147 LEU GLU TRP LEU GLN GLN ALA ASP VAL VAL VAL ALA GLU SEQRES 7 F 147 VAL THR GLN PRO SER LEU GLY VAL GLY TYR GLN LEU GLY SEQRES 8 F 147 ARG ALA VAL ALA PHE ASN LYS ARG ILE LEU CYS LEU PHE SEQRES 9 F 147 ARG PRO GLN SER GLY ARG VAL LEU SER ALA MET ILE ARG SEQRES 10 F 147 GLY ALA ALA ASP GLY SER ARG PHE GLN VAL TRP ASP TYR SEQRES 11 F 147 GLU GLU GLY GLU VAL GLU ALA LEU LEU ASP ARG TYR PHE SEQRES 12 F 147 GLU ALA ASP PRO HET 5HU A 201 35 HET EDO A 202 10 HET 5HU B 201 35 HET EDO B 202 10 HET EDO B 203 10 HET EDO B 204 10 HET 5HU C 201 35 HET EDO C 202 10 HET 5HU D 201 35 HET EDO D 202 10 HET 5HU E 201 35 HET EDO E 202 10 HET 5HU F 201 35 HET EDO F 202 10 HETNAM 5HU 5-HYDROXYMETHYLURIDINE-2'-DEOXY-5'-MONOPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 7 5HU 6(C10 H15 N2 O9 P) FORMUL 8 EDO 8(C2 H6 O2) FORMUL 21 HOH *498(H2 O) HELIX 1 AA1 ASP A 35 ARG A 47 1 13 HELIX 2 AA2 THR A 54 ALA A 59 5 6 HELIX 3 AA3 GLY A 72 ALA A 87 1 16 HELIX 4 AA4 SER A 98 PHE A 111 1 14 HELIX 5 AA5 ARG A 120 GLY A 124 5 5 HELIX 6 AA6 SER A 128 GLY A 133 1 6 HELIX 7 AA7 GLU A 146 GLY A 148 5 3 HELIX 8 AA8 GLU A 149 ASP A 161 1 13 HELIX 9 AA9 ASP B 35 ARG B 47 1 13 HELIX 10 AB1 THR B 54 ALA B 59 5 6 HELIX 11 AB2 GLY B 72 ALA B 87 1 16 HELIX 12 AB3 SER B 98 PHE B 111 1 14 HELIX 13 AB4 ARG B 120 GLY B 124 5 5 HELIX 14 AB5 SER B 128 GLY B 133 1 6 HELIX 15 AB6 GLU B 146 GLY B 148 5 3 HELIX 16 AB7 GLU B 149 ASP B 161 1 13 HELIX 17 AB8 ASP C 35 ARG C 47 1 13 HELIX 18 AB9 THR C 54 ALA C 59 5 6 HELIX 19 AC1 GLY C 72 ALA C 87 1 16 HELIX 20 AC2 SER C 98 PHE C 111 1 14 HELIX 21 AC3 ARG C 120 GLY C 124 5 5 HELIX 22 AC4 SER C 128 GLY C 133 1 6 HELIX 23 AC5 GLU C 146 GLY C 148 5 3 HELIX 24 AC6 GLU C 149 ASP C 161 1 13 HELIX 25 AC7 ASP D 35 ARG D 47 1 13 HELIX 26 AC8 THR D 54 ALA D 59 5 6 HELIX 27 AC9 ASP D 73 ALA D 87 1 15 HELIX 28 AD1 SER D 98 PHE D 111 1 14 HELIX 29 AD2 ARG D 120 GLY D 124 5 5 HELIX 30 AD3 SER D 128 GLY D 133 1 6 HELIX 31 AD4 GLU D 146 GLY D 148 5 3 HELIX 32 AD5 GLU D 149 GLU D 159 1 11 HELIX 33 AD6 ASP E 35 ARG E 47 1 13 HELIX 34 AD7 THR E 54 ALA E 59 5 6 HELIX 35 AD8 GLY E 72 ALA E 87 1 16 HELIX 36 AD9 SER E 98 PHE E 111 1 14 HELIX 37 AE1 ARG E 120 GLY E 124 5 5 HELIX 38 AE2 SER E 128 GLY E 133 1 6 HELIX 39 AE3 GLU E 146 GLY E 148 5 3 HELIX 40 AE4 GLU E 149 ALA E 160 1 12 HELIX 41 AE5 ASP F 35 ARG F 47 1 13 HELIX 42 AE6 THR F 54 ALA F 59 5 6 HELIX 43 AE7 GLY F 72 ALA F 87 1 16 HELIX 44 AE8 SER F 98 PHE F 111 1 14 HELIX 45 AE9 ARG F 120 GLY F 124 5 5 HELIX 46 AF1 SER F 128 GLY F 133 1 6 HELIX 47 AF2 GLU F 146 GLY F 148 5 3 HELIX 48 AF3 GLU F 149 ALA F 160 1 12 SHEET 1 AA1 5 THR A 51 VAL A 52 0 SHEET 2 AA1 5 ALA A 22 CYS A 26 1 N LEU A 23 O THR A 51 SHEET 3 AA1 5 VAL A 89 GLU A 93 1 O VAL A 91 N TYR A 24 SHEET 4 AA1 5 ARG A 114 PHE A 119 1 O ARG A 114 N VAL A 90 SHEET 5 AA1 5 PHE A 140 ASP A 144 1 O TRP A 143 N CYS A 117 SHEET 1 AA2 5 THR B 51 VAL B 52 0 SHEET 2 AA2 5 ALA B 22 CYS B 26 1 N LEU B 23 O THR B 51 SHEET 3 AA2 5 VAL B 89 GLU B 93 1 O VAL B 91 N TYR B 24 SHEET 4 AA2 5 ARG B 114 PHE B 119 1 O ARG B 114 N VAL B 90 SHEET 5 AA2 5 PHE B 140 ASP B 144 1 O GLN B 141 N CYS B 117 SHEET 1 AA3 5 THR C 51 VAL C 52 0 SHEET 2 AA3 5 ALA C 22 CYS C 26 1 N LEU C 23 O THR C 51 SHEET 3 AA3 5 VAL C 89 GLU C 93 1 O VAL C 91 N CYS C 26 SHEET 4 AA3 5 ILE C 115 PHE C 119 1 O LEU C 118 N ALA C 92 SHEET 5 AA3 5 PHE C 140 ASP C 144 1 O TRP C 143 N CYS C 117 SHEET 1 AA4 5 THR D 51 VAL D 52 0 SHEET 2 AA4 5 ALA D 22 CYS D 26 1 N LEU D 23 O THR D 51 SHEET 3 AA4 5 VAL D 89 GLU D 93 1 O VAL D 91 N TYR D 24 SHEET 4 AA4 5 ARG D 114 PHE D 119 1 O LEU D 116 N VAL D 90 SHEET 5 AA4 5 PHE D 140 ASP D 144 1 O TRP D 143 N CYS D 117 SHEET 1 AA5 5 THR E 51 VAL E 52 0 SHEET 2 AA5 5 ALA E 22 CYS E 26 1 N LEU E 23 O THR E 51 SHEET 3 AA5 5 VAL E 89 GLU E 93 1 O VAL E 91 N CYS E 26 SHEET 4 AA5 5 ARG E 114 PHE E 119 1 O LEU E 118 N ALA E 92 SHEET 5 AA5 5 PHE E 140 ASP E 144 1 O GLN E 141 N CYS E 117 SHEET 1 AA6 5 THR F 51 VAL F 52 0 SHEET 2 AA6 5 ALA F 22 CYS F 26 1 N LEU F 23 O THR F 51 SHEET 3 AA6 5 VAL F 89 GLU F 93 1 O VAL F 91 N CYS F 26 SHEET 4 AA6 5 ARG F 114 PHE F 119 1 O ARG F 114 N VAL F 90 SHEET 5 AA6 5 PHE F 140 ASP F 144 1 O TRP F 143 N CYS F 117 CRYST1 56.648 67.126 120.117 90.00 99.63 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017653 0.000000 0.002995 0.00000 SCALE2 0.000000 0.014897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008444 0.00000