HEADER LIPID BINDING PROTEIN 11-SEP-23 8QI1 TITLE 360A VIPP1 H1-6 HELICAL TUBES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE-ASSOCIATED PROTEIN VIPP1; COMPND 3 CHAIN: D; COMPND 4 SYNONYM: VESICLE-INDUCING PROTEIN IN PLASTIDS 1,VIPP1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 GENE: VIPP1, SLL0617; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS MEMBRANE REMODELING, MEMBRANE TUBULATION, LIPID BINDING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR B.JUNGLAS,C.SACHSE REVDAT 3 23-OCT-24 8QI1 1 JRNL REVDAT 2 16-OCT-24 8QI1 1 JRNL REVDAT 1 18-SEP-24 8QI1 0 JRNL AUTH B.JUNGLAS,D.KARTTE,M.KUTZNER,N.HELLMANN,I.RITTER, JRNL AUTH 2 D.SCHNEIDER,C.SACHSE JRNL TITL STRUCTURAL BASIS FOR VIPP1 MEMBRANE BINDING: FROM LOOSE JRNL TITL 2 COATS AND CARPETS TO RING AND ROD ASSEMBLIES. JRNL REF NAT.STRUCT.MOL.BIOL. 2024 JRNL REFN ESSN 1545-9985 JRNL PMID 39379528 JRNL DOI 10.1038/S41594-024-01399-Z REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.JUNGLAS,D.KARTTE,M.KUTZNER,N.HELLMANN,I.RITTER, REMARK 1 AUTH 2 D.SCHNEIDER,C.SACHSE REMARK 1 TITL STRUCTURAL BASIS FOR VIPP1 MEMBRANE BINDING: FROM LOOSE REMARK 1 TITL 2 COATS AND CARPETS TO RING AND ROD ASSEMBLIES REMARK 1 REF BIORXIV 2024 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2024.07.08.602470 REMARK 2 REMARK 2 RESOLUTION. 6.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 6.600 REMARK 3 NUMBER OF PARTICLES : 145546 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8QI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292133290. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : HELICAL ARRAY REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : VIPP1 H1-6 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4800.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 60-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 60-MERIC REMARK 350 SOFTWARE USED: UCSF CHIMERA 1.15_B42258. REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.720309 -0.693653 -0.000001 408.80446 REMARK 350 BIOMT2 2 0.693653 0.720309 0.000000 -173.86428 REMARK 350 BIOMT3 2 0.000001 0.000000 1.000000 -15.87619 REMARK 350 BIOMT1 3 0.755167 0.655532 0.000000 -172.49376 REMARK 350 BIOMT2 3 -0.655532 0.755167 0.000001 378.15279 REMARK 350 BIOMT3 3 0.000001 0.000000 1.000000 -14.11238 REMARK 350 BIOMT1 4 -0.585524 0.810655 0.000002 325.44403 REMARK 350 BIOMT2 4 -0.810655 -0.585524 0.000001 1006.39467 REMARK 350 BIOMT3 4 0.000002 -0.000001 1.000000 -12.34888 REMARK 350 BIOMT1 5 -0.859674 -0.510843 0.000001 995.61689 REMARK 350 BIOMT2 5 0.510843 -0.859674 -0.000001 566.51007 REMARK 350 BIOMT3 5 0.000001 -0.000001 1.000000 -10.58443 REMARK 350 BIOMT1 6 0.432085 -0.901833 -0.000002 617.29460 REMARK 350 BIOMT2 6 0.901833 0.432085 -0.000001 -140.24501 REMARK 350 BIOMT3 6 0.000002 -0.000001 1.000000 -8.82070 REMARK 350 BIOMT1 7 0.936794 0.349881 0.000000 -120.40321 REMARK 350 BIOMT2 7 -0.349881 0.936794 0.000000 173.49612 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -7.05617 REMARK 350 BIOMT1 8 -0.264883 0.964281 -0.000001 126.25320 REMARK 350 BIOMT2 8 -0.964281 -0.264883 -0.000001 936.24925 REMARK 350 BIOMT3 8 -0.000001 0.000001 1.000000 -5.29157 REMARK 350 BIOMT1 9 -0.984072 -0.177771 0.000001 907.97374 REMARK 350 BIOMT2 9 0.177771 -0.984072 -0.000001 758.64686 REMARK 350 BIOMT3 9 0.000001 -0.000001 1.000000 -3.52850 REMARK 350 BIOMT1 10 0.089242 -0.996010 -0.000001 800.84315 REMARK 350 BIOMT2 10 0.996010 0.089242 -0.000001 -35.80533 REMARK 350 BIOMT3 10 0.000001 0.000000 1.000000 -1.76440 REMARK 350 BIOMT1 11 0.089242 0.996010 0.000000 -35.80637 REMARK 350 BIOMT2 11 -0.996010 0.089242 0.000001 800.84216 REMARK 350 BIOMT3 11 0.000001 0.000000 1.000000 1.76376 REMARK 350 BIOMT1 12 -0.453368 0.891323 0.000001 236.05847 REMARK 350 BIOMT2 12 -0.891323 -0.453368 0.000001 984.77031 REMARK 350 BIOMT3 12 0.000001 0.000000 1.000000 -102.31238 REMARK 350 BIOMT1 13 -0.928226 -0.372016 0.000000 966.10209 REMARK 350 BIOMT2 13 0.372016 -0.928226 0.000000 653.60831 REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 -100.54785 REMARK 350 BIOMT1 14 0.287694 -0.957722 -0.000001 701.41207 REMARK 350 BIOMT2 14 0.957722 0.287694 0.000000 -103.07508 REMARK 350 BIOMT3 14 0.000001 0.000000 1.000000 -98.78421 REMARK 350 BIOMT1 15 0.979575 0.201078 -0.000002 -75.87399 REMARK 350 BIOMT2 15 -0.201078 0.979575 0.000001 93.03082 REMARK 350 BIOMT3 15 0.000002 -0.000001 1.000000 -97.02064 REMARK 350 BIOMT1 16 -0.112856 0.993611 -0.000001 50.08322 REMARK 350 BIOMT2 16 -0.993611 -0.112856 -0.000001 884.71694 REMARK 350 BIOMT3 16 -0.000001 0.000001 1.000000 -95.25549 REMARK 350 BIOMT1 17 -0.999718 -0.023734 0.000002 849.84954 REMARK 350 BIOMT2 17 0.023734 -0.999718 -0.000001 829.91375 REMARK 350 BIOMT3 17 0.000002 -0.000001 1.000000 -93.49277 REMARK 350 BIOMT1 18 -0.065577 -0.997847 -0.000001 866.63905 REMARK 350 BIOMT2 18 0.997847 -0.065577 -0.000003 28.44775 REMARK 350 BIOMT3 18 0.000003 -0.000001 1.000000 -91.72901 REMARK 350 BIOMT1 19 0.988014 -0.154366 -0.000001 69.86843 REMARK 350 BIOMT2 19 0.154366 0.988014 0.000000 -59.80000 REMARK 350 BIOMT3 19 0.000001 -0.000001 1.000000 -89.96447 REMARK 350 BIOMT1 20 0.241922 0.970296 0.000000 -89.13211 REMARK 350 BIOMT2 20 -0.970296 0.241922 0.000002 725.91560 REMARK 350 BIOMT3 20 0.000002 -0.000001 1.000000 -88.20081 REMARK 350 BIOMT1 21 -0.944834 0.327548 0.000002 679.25956 REMARK 350 BIOMT2 21 -0.327548 -0.944834 0.000000 954.40103 REMARK 350 BIOMT3 21 0.000001 -0.000001 1.000000 -86.43654 REMARK 350 BIOMT1 22 -0.410560 -0.911834 0.000000 975.40542 REMARK 350 BIOMT2 22 0.911834 -0.410560 -0.000002 209.46562 REMARK 350 BIOMT3 22 0.000001 -0.000001 1.000000 -84.67254 REMARK 350 BIOMT1 23 0.871556 -0.490296 -0.000002 259.87136 REMARK 350 BIOMT2 23 0.490296 0.871556 0.000000 -151.97802 REMARK 350 BIOMT3 23 0.000002 -0.000001 1.000000 -82.90861 REMARK 350 BIOMT1 24 0.566119 0.824324 0.000000 -163.98591 REMARK 350 BIOMT2 24 -0.824324 0.566119 0.000000 528.44634 REMARK 350 BIOMT3 24 0.000000 0.000000 1.000000 -81.14402 REMARK 350 BIOMT1 25 -0.770513 0.637424 0.000001 475.89727 REMARK 350 BIOMT2 25 -0.637424 -0.770513 0.000000 1011.33334 REMARK 350 BIOMT3 25 0.000001 -0.000001 1.000000 -79.38050 REMARK 350 BIOMT1 26 -0.703643 -0.710554 0.000001 1013.96243 REMARK 350 BIOMT2 26 0.710554 -0.703643 -0.000002 417.09825 REMARK 350 BIOMT3 26 0.000002 -0.000001 1.000000 -77.61680 REMARK 350 BIOMT1 27 0.644924 -0.764247 0.000000 470.11547 REMARK 350 BIOMT2 27 0.764247 0.644924 0.000000 -171.85180 REMARK 350 BIOMT3 27 0.000000 0.000000 1.000000 -75.85219 REMARK 350 BIOMT1 28 0.818751 0.574149 -0.000001 -165.01747 REMARK 350 BIOMT2 28 -0.574149 0.818751 0.000002 317.26641 REMARK 350 BIOMT3 28 0.000002 -0.000001 1.000000 -74.08865 REMARK 350 BIOMT1 29 -0.498790 0.866723 0.000002 265.46741 REMARK 350 BIOMT2 29 -0.866723 -0.498790 0.000002 993.51483 REMARK 350 BIOMT3 29 0.000003 -0.000001 1.000000 -72.32497 REMARK 350 BIOMT1 30 -0.907778 -0.419452 0.000000 977.43620 REMARK 350 BIOMT2 30 0.419452 -0.907778 0.000000 625.09707 REMARK 350 BIOMT3 30 0.000000 0.000000 1.000000 -70.56013 REMARK 350 BIOMT1 31 0.336767 -0.941588 0.000000 674.02472 REMARK 350 BIOMT2 31 0.941588 0.336767 0.000000 -116.90916 REMARK 350 BIOMT3 31 0.000000 0.000000 1.000000 -68.79604 REMARK 350 BIOMT1 32 0.967885 0.251394 0.000000 -92.09722 REMARK 350 BIOMT2 32 -0.251394 0.967885 0.000000 119.07389 REMARK 350 BIOMT3 32 -0.000001 0.000000 1.000000 -67.03181 REMARK 350 BIOMT1 33 -0.164014 0.986458 0.000000 74.57356 REMARK 350 BIOMT2 33 -0.986458 -0.164014 0.000000 903.19858 REMARK 350 BIOMT3 33 0.000000 0.000000 1.000000 -65.26814 REMARK 350 BIOMT1 34 -0.997159 -0.075327 0.000001 870.44356 REMARK 350 BIOMT2 34 0.075327 -0.997159 -0.000001 807.17004 REMARK 350 BIOMT3 34 0.000002 -0.000001 1.000000 -63.50459 REMARK 350 BIOMT1 35 -0.013963 -0.999903 -0.000001 845.82422 REMARK 350 BIOMT2 35 0.999903 -0.013963 -0.000003 5.90643 REMARK 350 BIOMT3 35 0.000003 -0.000001 1.000000 -61.74094 REMARK 350 BIOMT1 36 0.994667 -0.103140 -0.000002 45.55961 REMARK 350 BIOMT2 36 0.103140 0.994667 0.000001 -41.07926 REMARK 350 BIOMT3 36 0.000002 -0.000001 1.000000 -59.97660 REMARK 350 BIOMT1 37 0.191494 0.981494 0.000000 -72.65471 REMARK 350 BIOMT2 37 -0.981494 0.191494 0.000002 751.79939 REMARK 350 BIOMT3 37 0.000002 -0.000001 1.000000 -58.21257 REMARK 350 BIOMT1 38 -0.960488 0.278321 0.000001 706.51030 REMARK 350 BIOMT2 38 -0.278321 -0.960488 0.000000 940.29996 REMARK 350 BIOMT3 38 0.000001 0.000000 1.000000 -56.44828 REMARK 350 BIOMT1 39 -0.362926 -0.931818 0.000000 963.79241 REMARK 350 BIOMT2 39 0.931818 -0.362926 0.000000 181.06495 REMARK 350 BIOMT3 39 0.000000 0.000000 1.000000 -54.68385 REMARK 350 BIOMT1 40 0.895712 -0.444635 -0.000002 230.54870 REMARK 350 BIOMT2 40 0.444635 0.895712 0.000000 -142.94596 REMARK 350 BIOMT3 40 0.000001 -0.000001 1.000000 -52.92054 REMARK 350 BIOMT1 41 0.522796 0.852458 0.000000 -157.60684 REMARK 350 BIOMT2 41 -0.852458 0.522796 0.000001 558.45768 REMARK 350 BIOMT3 41 0.000001 0.000000 1.000000 -51.15625 REMARK 350 BIOMT1 42 -0.802401 0.596786 0.000000 506.35829 REMARK 350 BIOMT2 42 -0.596786 -0.802401 0.000000 1007.65857 REMARK 350 BIOMT3 42 0.000000 0.000000 1.000000 -49.39215 REMARK 350 BIOMT1 43 -0.666012 -0.745941 0.000000 1013.02019 REMARK 350 BIOMT2 43 0.745941 -0.666012 -0.000002 386.43029 REMARK 350 BIOMT3 43 0.000002 -0.000001 1.000000 -47.62858 REMARK 350 BIOMT1 44 0.683529 -0.729924 -0.000002 439.48689 REMARK 350 BIOMT2 44 0.729924 0.683529 -0.000001 -173.64950 REMARK 350 BIOMT3 44 0.000002 -0.000001 1.000000 -45.86485 REMARK 350 BIOMT1 45 0.788011 0.615661 0.000000 -169.54247 REMARK 350 BIOMT2 45 -0.615661 0.788011 0.000001 347.61286 REMARK 350 BIOMT3 45 0.000001 0.000000 1.000000 -44.10031 REMARK 350 BIOMT1 46 -0.542881 0.839809 0.000001 295.29001 REMARK 350 BIOMT2 46 -0.839809 -0.542881 0.000001 1000.73001 REMARK 350 BIOMT3 46 0.000001 0.000000 1.000000 -42.33633 REMARK 350 BIOMT1 47 -0.884907 -0.465769 0.000001 987.28339 REMARK 350 BIOMT2 47 0.465769 -0.884907 -0.000002 596.03865 REMARK 350 BIOMT3 47 0.000002 -0.000001 1.000000 -40.57273 REMARK 350 BIOMT1 48 0.384939 -0.922942 -0.000001 645.96165 REMARK 350 BIOMT2 48 0.922942 0.384939 -0.000001 -129.30988 REMARK 350 BIOMT3 48 0.000002 -0.000001 1.000000 -38.80860 REMARK 350 BIOMT1 49 0.953612 0.301039 -0.000002 -106.95247 REMARK 350 BIOMT2 49 -0.301039 0.953612 0.000002 145.91807 REMARK 350 BIOMT3 49 0.000003 -0.000001 1.000000 -37.04504 REMARK 350 BIOMT1 50 -0.214735 0.976672 0.000000 99.98592 REMARK 350 BIOMT2 50 -0.976672 -0.214735 0.000000 920.39125 REMARK 350 BIOMT3 50 0.000000 0.000000 1.000000 -35.28010 REMARK 350 BIOMT1 51 -0.991939 -0.126718 0.000002 889.83511 REMARK 350 BIOMT2 51 0.126718 -0.991939 -0.000001 783.39371 REMARK 350 BIOMT3 51 0.000002 -0.000001 1.000000 -33.51680 REMARK 350 BIOMT1 52 0.037690 -0.999289 -0.000001 823.87261 REMARK 350 BIOMT2 52 0.999289 0.037690 -0.000002 -15.53021 REMARK 350 BIOMT3 52 0.000002 -0.000001 1.000000 -31.75289 REMARK 350 BIOMT1 53 0.998666 -0.051639 -0.000002 22.24945 REMARK 350 BIOMT2 53 0.051639 0.998666 0.000001 -21.12812 REMARK 350 BIOMT3 53 0.000002 -0.000001 1.000000 -29.98883 REMARK 350 BIOMT1 54 0.140556 0.990073 0.000000 -54.86403 REMARK 350 BIOMT2 54 -0.990073 0.140556 -0.000001 776.79745 REMARK 350 BIOMT3 54 -0.000001 0.000000 1.000000 -28.22376 REMARK 350 BIOMT1 55 -0.973579 0.228351 0.000000 732.99567 REMARK 350 BIOMT2 55 -0.228351 -0.973579 0.000000 924.81068 REMARK 350 BIOMT3 55 0.000000 0.000000 1.000000 -26.45998 REMARK 350 BIOMT1 56 -0.314324 -0.949316 0.000000 950.72870 REMARK 350 BIOMT2 56 0.949316 -0.314324 0.000000 153.30313 REMARK 350 BIOMT3 56 0.000000 0.000000 1.000000 -24.69605 REMARK 350 BIOMT1 57 0.917477 -0.397788 -0.000002 201.73142 REMARK 350 BIOMT2 57 0.397788 0.917477 0.000000 -132.41160 REMARK 350 BIOMT3 57 0.000001 -0.000001 1.000000 -22.93252 REMARK 350 BIOMT1 58 0.478079 0.878317 0.000000 -149.68611 REMARK 350 BIOMT2 58 -0.878317 0.478079 0.000002 588.09958 REMARK 350 BIOMT3 58 0.000002 -0.000001 1.000000 -21.16866 REMARK 350 BIOMT1 59 -0.832148 0.554554 0.000002 536.58836 REMARK 350 BIOMT2 59 -0.554554 -0.832148 0.000000 1002.41483 REMARK 350 BIOMT3 59 0.000001 -0.000001 1.000000 -19.40456 REMARK 350 BIOMT1 60 -0.626604 -0.779338 0.000000 1010.49545 REMARK 350 BIOMT2 60 0.779338 -0.626604 -0.000001 355.85185 REMARK 350 BIOMT3 60 0.000001 -0.000001 1.000000 -17.64051 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP D 24 CB CG OD1 OD2 REMARK 470 PRO D 25 CB CG CD REMARK 470 GLU D 26 CB CG CD OE1 OE2 REMARK 470 LYS D 27 CB CG CD CE NZ REMARK 470 VAL D 28 CB CG1 CG2 REMARK 470 LEU D 29 CB CG CD1 CD2 REMARK 470 GLU D 30 CB CG CD OE1 OE2 REMARK 470 GLN D 31 CB CG CD OE1 NE2 REMARK 470 ALA D 32 CB REMARK 470 VAL D 33 CB CG1 CG2 REMARK 470 ILE D 34 CB CG1 CG2 CD1 REMARK 470 ASP D 35 CB CG OD1 OD2 REMARK 470 MET D 36 CB CG SD CE REMARK 470 GLN D 37 CB CG CD OE1 NE2 REMARK 470 GLU D 38 CB CG CD OE1 OE2 REMARK 470 ASP D 39 CB CG OD1 OD2 REMARK 470 LEU D 40 CB CG CD1 CD2 REMARK 470 VAL D 41 CB CG1 CG2 REMARK 470 GLN D 42 CB CG CD OE1 NE2 REMARK 470 LEU D 43 CB CG CD1 CD2 REMARK 470 ARG D 44 CB CG CD NE CZ NH1 NH2 REMARK 470 GLN D 45 CB CG CD OE1 NE2 REMARK 470 ALA D 46 CB REMARK 470 VAL D 47 CB CG1 CG2 REMARK 470 ALA D 48 CB REMARK 470 ARG D 49 CB CG CD NE CZ NH1 NH2 REMARK 470 THR D 50 CB OG1 CG2 REMARK 470 ILE D 51 CB CG1 CG2 CD1 REMARK 470 ALA D 52 CB REMARK 470 GLU D 53 CB CG CD OE1 OE2 REMARK 470 GLU D 54 CB CG CD OE1 OE2 REMARK 470 LYS D 55 CB CG CD CE NZ REMARK 470 ARG D 56 CB CG CD NE CZ NH1 NH2 REMARK 470 THR D 57 CB OG1 CG2 REMARK 470 GLU D 58 CB CG CD OE1 OE2 REMARK 470 GLN D 59 CB CG CD OE1 NE2 REMARK 470 ARG D 60 CB CG CD NE CZ NH1 NH2 REMARK 470 LEU D 61 CB CG CD1 CD2 REMARK 470 ASN D 62 CB CG OD1 ND2 REMARK 470 GLN D 63 CB CG CD OE1 NE2 REMARK 470 ASP D 64 CB CG OD1 OD2 REMARK 470 THR D 65 CB OG1 CG2 REMARK 470 GLN D 66 CB CG CD OE1 NE2 REMARK 470 GLU D 67 CB CG CD OE1 OE2 REMARK 470 ALA D 68 CB REMARK 470 LYS D 69 CB CG CD CE NZ REMARK 470 LYS D 70 CB CG CD CE NZ REMARK 470 TRP D 71 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 470 TRP D 71 CZ2 CZ3 CH2 REMARK 470 GLU D 72 CB CG CD OE1 OE2 REMARK 470 ASP D 73 CB CG OD1 OD2 REMARK 470 ARG D 74 CB CG CD NE CZ NH1 NH2 REMARK 470 ALA D 75 CB REMARK 470 LYS D 76 CB CG CD CE NZ REMARK 470 LEU D 77 CB CG CD1 CD2 REMARK 470 ALA D 78 CB REMARK 470 LEU D 79 CB CG CD1 CD2 REMARK 470 THR D 80 CB OG1 CG2 REMARK 470 ASN D 81 CB CG OD1 ND2 REMARK 470 GLU D 83 CB CG CD OE1 OE2 REMARK 470 GLU D 84 CB CG CD OE1 OE2 REMARK 470 ASN D 85 CB CG OD1 ND2 REMARK 470 LEU D 86 CB CG CD1 CD2 REMARK 470 ALA D 87 CB REMARK 470 ARG D 88 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU D 89 CB CG CD OE1 OE2 REMARK 470 ALA D 90 CB REMARK 470 LEU D 91 CB CG CD1 CD2 REMARK 470 ALA D 92 CB REMARK 470 ARG D 93 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS D 94 CB CG CD CE NZ REMARK 470 LYS D 95 CB CG CD CE NZ REMARK 470 SER D 96 CB OG REMARK 470 LEU D 97 CB CG CD1 CD2 REMARK 470 THR D 98 CB OG1 CG2 REMARK 470 ASP D 99 CB CG OD1 OD2 REMARK 470 THR D 100 CB OG1 CG2 REMARK 470 ALA D 101 CB REMARK 470 ALA D 102 CB REMARK 470 ALA D 103 CB REMARK 470 TYR D 104 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR D 104 OH REMARK 470 GLN D 105 CB CG CD OE1 NE2 REMARK 470 THR D 106 CB OG1 CG2 REMARK 470 GLN D 107 CB CG CD OE1 NE2 REMARK 470 LEU D 108 CB CG CD1 CD2 REMARK 470 ALA D 109 CB REMARK 470 GLN D 110 CB CG CD OE1 NE2 REMARK 470 GLN D 111 CB CG CD OE1 NE2 REMARK 470 ARG D 112 CB CG CD NE CZ NH1 NH2 REMARK 470 THR D 113 CB OG1 CG2 REMARK 470 MET D 114 CB CG SD CE REMARK 470 SER D 115 CB OG REMARK 470 GLU D 116 CB CG CD OE1 OE2 REMARK 470 ASN D 117 CB CG OD1 ND2 REMARK 470 LEU D 118 CB CG CD1 CD2 REMARK 470 ARG D 119 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG D 120 CB CG CD NE CZ NH1 NH2 REMARK 470 ASN D 121 CB CG OD1 ND2 REMARK 470 LEU D 122 CB CG CD1 CD2 REMARK 470 ALA D 123 CB REMARK 470 ALA D 124 CB REMARK 470 LEU D 125 CB CG CD1 CD2 REMARK 470 GLU D 126 CB CG CD OE1 OE2 REMARK 470 ALA D 127 CB REMARK 470 LYS D 128 CB CG CD CE NZ REMARK 470 ILE D 129 CB CG1 CG2 CD1 REMARK 470 SER D 130 CB OG REMARK 470 GLU D 131 CB CG CD OE1 OE2 REMARK 470 ALA D 132 CB REMARK 470 LYS D 133 CB CG CD CE NZ REMARK 470 THR D 134 CB OG1 CG2 REMARK 470 LYS D 135 CB CG CD CE NZ REMARK 470 LYS D 136 CB CG CD CE NZ REMARK 470 ASN D 137 CB CG OD1 ND2 REMARK 470 MET D 138 CB CG SD CE REMARK 470 LEU D 139 CB CG CD1 CD2 REMARK 470 GLN D 140 CB CG CD OE1 NE2 REMARK 470 ALA D 141 CB REMARK 470 ARG D 142 CB CG CD NE CZ NH1 NH2 REMARK 470 ALA D 143 CB REMARK 470 LYS D 144 CB CG CD CE NZ REMARK 470 ALA D 145 CB REMARK 470 ALA D 146 CB REMARK 470 LYS D 147 CB CG CD CE NZ REMARK 470 ALA D 148 CB REMARK 470 ASN D 149 CB CG OD1 ND2 REMARK 470 ALA D 150 CB REMARK 470 GLU D 151 CB CG CD OE1 OE2 REMARK 470 LEU D 152 CB CG CD1 CD2 REMARK 470 GLN D 153 CB CG CD OE1 NE2 REMARK 470 GLN D 154 CB CG CD OE1 NE2 REMARK 470 THR D 155 CB OG1 CG2 REMARK 470 LEU D 156 CB CG CD1 CD2 REMARK 470 LEU D 159 CB CG CD1 CD2 REMARK 470 THR D 161 CB OG1 CG2 REMARK 470 SER D 162 CB OG REMARK 470 SER D 163 CB OG REMARK 470 ALA D 164 CB REMARK 470 THR D 165 CB OG1 CG2 REMARK 470 SER D 166 CB OG REMARK 470 ALA D 167 CB REMARK 470 PHE D 168 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU D 169 CB CG CD OE1 OE2 REMARK 470 ARG D 170 CB CG CD NE CZ NH1 NH2 REMARK 470 MET D 171 CB CG SD CE REMARK 470 GLU D 172 CB CG CD OE1 OE2 REMARK 470 ASN D 173 CB CG OD1 ND2 REMARK 470 LYS D 174 CB CG CD CE NZ REMARK 470 VAL D 175 CB CG1 CG2 REMARK 470 LEU D 176 CB CG CD1 CD2 REMARK 470 ASP D 177 CB CG OD1 OD2 REMARK 470 MET D 178 CB CG SD CE REMARK 470 GLU D 179 CB CG CD OE1 OE2 REMARK 470 ALA D 180 CB REMARK 470 THR D 181 CB OG1 CG2 REMARK 470 SER D 182 CB OG REMARK 470 GLN D 183 CB CG CD OE1 NE2 REMARK 470 ALA D 184 CB REMARK 470 ALA D 185 CB REMARK 470 GLU D 187 CB CG CD OE1 OE2 REMARK 470 LEU D 188 CB CG CD1 CD2 REMARK 470 ALA D 189 CB REMARK 470 PHE D 191 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE D 193 CB CG1 CG2 CD1 REMARK 470 GLU D 194 CB CG CD OE1 OE2 REMARK 470 ASN D 195 CB CG OD1 ND2 REMARK 470 GLN D 196 CB CG CD OE1 NE2 REMARK 470 PHE D 197 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ALA D 198 CB REMARK 470 GLN D 199 CB CG CD OE1 NE2 REMARK 470 LEU D 200 CB CG CD1 CD2 REMARK 470 GLU D 201 CB CG CD OE1 OE2 REMARK 470 ALA D 202 CB REMARK 470 SER D 203 CB OG REMARK 470 SER D 204 CB OG REMARK 470 VAL D 206 CB CG1 CG2 REMARK 470 GLU D 207 CB CG CD OE1 OE2 REMARK 470 ASP D 208 CB CG OD1 OD2 REMARK 470 GLU D 209 CB CG CD OE1 OE2 REMARK 470 LEU D 210 CB CG CD1 CD2 REMARK 470 ALA D 211 CB REMARK 470 ALA D 212 CB REMARK 470 LEU D 213 CB CG CD1 CD2 REMARK 470 LYS D 214 CB CG CD CE NZ REMARK 470 ALA D 215 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN D 81 117.40 -163.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-18430 RELATED DB: EMDB REMARK 900 360A VIPP1 H1-6 HELICAL TUBES DBREF 8QI1 D 24 215 UNP Q55707 VIPP1_SYNY3 24 215 SEQRES 1 D 192 ASP PRO GLU LYS VAL LEU GLU GLN ALA VAL ILE ASP MET SEQRES 2 D 192 GLN GLU ASP LEU VAL GLN LEU ARG GLN ALA VAL ALA ARG SEQRES 3 D 192 THR ILE ALA GLU GLU LYS ARG THR GLU GLN ARG LEU ASN SEQRES 4 D 192 GLN ASP THR GLN GLU ALA LYS LYS TRP GLU ASP ARG ALA SEQRES 5 D 192 LYS LEU ALA LEU THR ASN GLY GLU GLU ASN LEU ALA ARG SEQRES 6 D 192 GLU ALA LEU ALA ARG LYS LYS SER LEU THR ASP THR ALA SEQRES 7 D 192 ALA ALA TYR GLN THR GLN LEU ALA GLN GLN ARG THR MET SEQRES 8 D 192 SER GLU ASN LEU ARG ARG ASN LEU ALA ALA LEU GLU ALA SEQRES 9 D 192 LYS ILE SER GLU ALA LYS THR LYS LYS ASN MET LEU GLN SEQRES 10 D 192 ALA ARG ALA LYS ALA ALA LYS ALA ASN ALA GLU LEU GLN SEQRES 11 D 192 GLN THR LEU GLY GLY LEU GLY THR SER SER ALA THR SER SEQRES 12 D 192 ALA PHE GLU ARG MET GLU ASN LYS VAL LEU ASP MET GLU SEQRES 13 D 192 ALA THR SER GLN ALA ALA GLY GLU LEU ALA GLY PHE GLY SEQRES 14 D 192 ILE GLU ASN GLN PHE ALA GLN LEU GLU ALA SER SER GLY SEQRES 15 D 192 VAL GLU ASP GLU LEU ALA ALA LEU LYS ALA HELIX 1 AA1 ASP D 24 ASN D 81 1 58 HELIX 2 AA2 GLU D 83 GLY D 158 1 76 HELIX 3 AA3 GLY D 160 SER D 163 5 4 HELIX 4 AA4 ALA D 164 GLY D 190 1 27 HELIX 5 AA5 GLY D 192 ALA D 215 1 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000