HEADER LIPID BINDING PROTEIN 11-SEP-23 8QI2 TITLE 370A VIPP1 H1-6 HELICAL TUBES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE-ASSOCIATED PROTEIN VIPP1; COMPND 3 CHAIN: D; COMPND 4 SYNONYM: VESICLE-INDUCING PROTEIN IN PLASTIDS 1,VIPP1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 GENE: VIPP1, SLL0617; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS MEMBRANE REMODELING, MEMBRANE TUBULATION, LIPID BINDING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR B.JUNGLAS,C.SACHSE REVDAT 3 23-OCT-24 8QI2 1 JRNL REVDAT 2 16-OCT-24 8QI2 1 JRNL REVDAT 1 18-SEP-24 8QI2 0 JRNL AUTH B.JUNGLAS,D.KARTTE,M.KUTZNER,N.HELLMANN,I.RITTER, JRNL AUTH 2 D.SCHNEIDER,C.SACHSE JRNL TITL STRUCTURAL BASIS FOR VIPP1 MEMBRANE BINDING: FROM LOOSE JRNL TITL 2 COATS AND CARPETS TO RING AND ROD ASSEMBLIES. JRNL REF NAT.STRUCT.MOL.BIOL. 2024 JRNL REFN ESSN 1545-9985 JRNL PMID 39379528 JRNL DOI 10.1038/S41594-024-01399-Z REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.JUNGLAS,D.KARTTE,M.KUTZNER,N.HELLMANN,I.RITTER, REMARK 1 AUTH 2 D.SCHNEIDER,C.SACHSE REMARK 1 TITL STRUCTURAL BASIS FOR VIPP1 MEMBRANE BINDING: FROM LOOSE REMARK 1 TITL 2 COATS AND CARPETS TO RING AND ROD ASSEMBLIES REMARK 1 REF BIORXIV 2024 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2024.07.08.602470 REMARK 2 REMARK 2 RESOLUTION. 6.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 6.700 REMARK 3 NUMBER OF PARTICLES : 165878 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8QI2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292133296. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : HELICAL ARRAY REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : VIPP1 H1-6 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4800.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 60-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 60-MERIC REMARK 350 SOFTWARE USED: UCSF CHIMERA 1.15_B42258. REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.998890 -0.047106 0.000000 20.25089 REMARK 350 BIOMT2 2 0.047106 0.998890 0.000000 -19.31830 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -30.06901 REMARK 350 BIOMT1 3 0.214735 0.976672 -0.000001 -80.39044 REMARK 350 BIOMT2 3 -0.976672 0.214735 -0.000001 740.01410 REMARK 350 BIOMT3 3 0.000000 0.000001 1.000000 -26.72801 REMARK 350 BIOMT1 4 -0.926529 0.376224 0.000001 651.12788 REMARK 350 BIOMT2 4 -0.376224 -0.926529 -0.000001 967.15613 REMARK 350 BIOMT3 4 0.000000 -0.000001 1.000000 -23.38697 REMARK 350 BIOMT1 5 -0.526955 -0.849893 -0.000001 998.27651 REMARK 350 BIOMT2 5 0.849893 -0.526955 -0.000001 284.36681 REMARK 350 BIOMT3 5 0.000001 -0.000001 1.000000 -20.04598 REMARK 350 BIOMT1 6 0.748956 -0.662620 0.000000 383.73891 REMARK 350 BIOMT2 6 0.662620 0.748956 0.000000 -172.86179 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -16.70500 REMARK 350 BIOMT1 7 0.779338 0.626604 0.000000 -170.49553 REMARK 350 BIOMT2 7 -0.626604 0.779338 0.000001 355.85113 REMARK 350 BIOMT3 7 0.000001 -0.000001 1.000000 -13.36397 REMARK 350 BIOMT1 8 -0.486336 0.873772 0.000000 257.27722 REMARK 350 BIOMT2 8 -0.873772 -0.486336 0.000000 991.24499 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 -10.02302 REMARK 350 BIOMT1 9 -0.943223 -0.332161 0.000000 955.66098 REMARK 350 BIOMT2 9 0.332161 -0.943223 0.000000 676.64602 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 -6.68202 REMARK 350 BIOMT1 10 0.168489 -0.985703 -0.000001 763.23044 REMARK 350 BIOMT2 10 0.985703 0.168489 0.000000 -64.76084 REMARK 350 BIOMT3 10 0.000001 -0.000001 1.000000 -3.34098 REMARK 350 BIOMT1 11 0.168489 0.985704 0.000000 -64.76055 REMARK 350 BIOMT2 11 -0.985704 0.168489 0.000000 763.23009 REMARK 350 BIOMT3 11 0.000000 -0.000001 1.000000 3.34102 REMARK 350 BIOMT1 12 -0.027922 0.999610 0.000000 11.89122 REMARK 350 BIOMT2 12 -0.999610 -0.027922 0.000000 851.56338 REMARK 350 BIOMT3 12 0.000000 0.000000 1.000000 -93.54800 REMARK 350 BIOMT1 13 -0.990024 0.140900 0.000000 776.63119 REMARK 350 BIOMT2 13 -0.140900 -0.990024 0.000000 894.98818 REMARK 350 BIOMT3 13 0.000000 -0.000001 1.000000 -90.20700 REMARK 350 BIOMT1 14 -0.305694 -0.952130 0.000000 948.28558 REMARK 350 BIOMT2 14 0.952130 -0.305694 0.000000 148.49711 REMARK 350 BIOMT3 14 0.000000 0.000000 1.000000 -86.86601 REMARK 350 BIOMT1 15 0.887011 -0.461748 0.000000 241.38962 REMARK 350 BIOMT2 15 0.461748 0.887011 0.000000 -146.47846 REMARK 350 BIOMT3 15 0.000000 0.000000 1.000000 -83.52500 REMARK 350 BIOMT1 16 0.604599 0.796530 0.000000 -168.47412 REMARK 350 BIOMT2 16 -0.796530 0.604599 0.000001 500.61093 REMARK 350 BIOMT3 16 0.000000 -0.000001 1.000000 -80.18400 REMARK 350 BIOMT1 17 -0.683274 0.730162 0.000000 400.30712 REMARK 350 BIOMT2 17 -0.730162 -0.683274 0.000000 1013.64304 REMARK 350 BIOMT3 17 0.000000 0.000000 1.000000 -76.84299 REMARK 350 BIOMT1 18 -0.834848 -0.550481 0.000000 1001.83786 REMARK 350 BIOMT2 18 0.550481 -0.834848 0.000001 539.43335 REMARK 350 BIOMT3 18 0.000000 0.000001 1.000000 -73.50200 REMARK 350 BIOMT1 19 0.401948 -0.915663 0.000002 635.75903 REMARK 350 BIOMT2 19 0.915663 0.401948 0.000000 -133.39655 REMARK 350 BIOMT3 19 -0.000001 0.000002 1.000000 -70.16103 REMARK 350 BIOMT1 20 0.970296 0.241922 0.000000 -89.13134 REMARK 350 BIOMT2 20 -0.241922 0.970296 0.000000 114.08316 REMARK 350 BIOMT3 20 0.000000 0.000000 1.000000 -66.82001 REMARK 350 BIOMT1 21 -0.074979 0.997185 -0.000001 32.67384 REMARK 350 BIOMT2 21 -0.997185 -0.074979 0.000000 870.30915 REMARK 350 BIOMT3 21 0.000000 0.000001 1.000000 -63.47901 REMARK 350 BIOMT1 22 -0.995562 0.094108 0.000000 798.61075 REMARK 350 BIOMT2 22 -0.094108 -0.995562 0.000001 877.66066 REMARK 350 BIOMT3 22 0.000000 0.000001 1.000000 -60.13802 REMARK 350 BIOMT1 23 -0.260505 -0.965473 -0.000001 934.91116 REMARK 350 BIOMT2 23 0.965473 -0.260505 -0.000001 123.91408 REMARK 350 BIOMT3 23 0.000001 -0.000001 1.000000 -56.79699 REMARK 350 BIOMT1 24 0.907778 -0.419451 0.000001 214.90269 REMARK 350 BIOMT2 24 0.419451 0.907778 0.000000 -137.43566 REMARK 350 BIOMT3 24 0.000000 0.000001 1.000000 -53.45600 REMARK 350 BIOMT1 25 0.566405 0.824127 0.000000 -164.02311 REMARK 350 BIOMT2 25 -0.824127 0.566405 0.000000 528.24275 REMARK 350 BIOMT3 25 0.000000 0.000000 1.000000 -50.11499 REMARK 350 BIOMT1 26 -0.716910 0.697165 0.000000 428.29317 REMARK 350 BIOMT2 26 -0.697165 -0.716910 0.000000 1013.91179 REMARK 350 BIOMT3 26 0.000000 0.000000 1.000000 -46.77400 REMARK 350 BIOMT1 27 -0.807990 -0.589197 0.000000 1006.81806 REMARK 350 BIOMT2 27 0.589197 -0.807990 0.000000 511.89323 REMARK 350 BIOMT3 27 0.000000 0.000000 1.000000 -43.43300 REMARK 350 BIOMT1 28 0.444636 -0.895711 0.000000 609.45185 REMARK 350 BIOMT2 28 0.895711 0.444636 0.000000 -142.94548 REMARK 350 BIOMT3 28 0.000000 0.000000 1.000000 -40.09200 REMARK 350 BIOMT1 29 0.957822 0.287361 0.000000 -102.97672 REMARK 350 BIOMT2 29 -0.287361 0.957822 0.000001 138.40633 REMARK 350 BIOMT3 29 0.000001 -0.000001 1.000000 -36.75100 REMARK 350 BIOMT1 30 -0.121870 0.992546 0.000000 54.31623 REMARK 350 BIOMT2 30 -0.992546 -0.121870 0.000000 888.05469 REMARK 350 BIOMT3 30 0.000000 0.000000 1.000000 -33.41002 REMARK 350 BIOMT1 31 -0.998890 0.047106 0.000000 819.74911 REMARK 350 BIOMT2 31 -0.047106 -0.998890 0.000000 859.31830 REMARK 350 BIOMT3 31 0.000000 0.000000 1.000000 -30.06901 REMARK 350 BIOMT1 32 -0.214735 -0.976672 0.000001 920.39044 REMARK 350 BIOMT2 32 0.976672 -0.214735 0.000001 99.98590 REMARK 350 BIOMT3 32 0.000000 0.000001 1.000000 -26.72801 REMARK 350 BIOMT1 33 0.926529 -0.376224 -0.000001 188.87212 REMARK 350 BIOMT2 33 0.376224 0.926529 0.000001 -127.15613 REMARK 350 BIOMT3 33 0.000000 -0.000001 1.000000 -23.38697 REMARK 350 BIOMT1 34 0.526955 0.849893 0.000001 -158.27651 REMARK 350 BIOMT2 34 -0.849893 0.526955 0.000001 555.63319 REMARK 350 BIOMT3 34 0.000001 -0.000001 1.000000 -20.04598 REMARK 350 BIOMT1 35 -0.748956 0.662620 0.000000 456.26109 REMARK 350 BIOMT2 35 -0.662620 -0.748956 0.000000 1012.86179 REMARK 350 BIOMT3 35 0.000000 0.000000 1.000000 -16.70500 REMARK 350 BIOMT1 36 -0.779338 -0.626604 0.000000 1010.49553 REMARK 350 BIOMT2 36 0.626604 -0.779338 -0.000001 484.14887 REMARK 350 BIOMT3 36 0.000001 -0.000001 1.000000 -13.36397 REMARK 350 BIOMT1 37 0.486336 -0.873772 0.000000 582.72278 REMARK 350 BIOMT2 37 0.873772 0.486336 0.000000 -151.24499 REMARK 350 BIOMT3 37 0.000000 0.000000 1.000000 -10.02302 REMARK 350 BIOMT1 38 0.943223 0.332161 0.000000 -115.66098 REMARK 350 BIOMT2 38 -0.332161 0.943223 0.000000 163.35398 REMARK 350 BIOMT3 38 0.000000 0.000000 1.000000 -6.68202 REMARK 350 BIOMT1 39 -0.168489 0.985703 0.000001 76.76956 REMARK 350 BIOMT2 39 -0.985703 -0.168489 0.000000 904.76084 REMARK 350 BIOMT3 39 0.000001 -0.000001 1.000000 -3.34098 REMARK 350 BIOMT1 40 -1.000000 0.000000 0.000000 840.00000 REMARK 350 BIOMT2 40 0.000000 -1.000000 0.000000 840.00000 REMARK 350 BIOMT3 40 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 41 -0.168489 -0.985704 0.000000 904.76055 REMARK 350 BIOMT2 41 0.985704 -0.168489 0.000000 76.76991 REMARK 350 BIOMT3 41 0.000000 -0.000001 1.000000 3.34102 REMARK 350 BIOMT1 42 0.027922 -0.999610 0.000000 828.10878 REMARK 350 BIOMT2 42 0.999610 0.027922 0.000000 -11.56338 REMARK 350 BIOMT3 42 0.000000 0.000000 1.000000 -93.54800 REMARK 350 BIOMT1 43 0.990024 -0.140900 0.000000 63.36881 REMARK 350 BIOMT2 43 0.140900 0.990024 0.000000 -54.98818 REMARK 350 BIOMT3 43 0.000000 -0.000001 1.000000 -90.20700 REMARK 350 BIOMT1 44 0.305694 0.952130 0.000000 -108.28558 REMARK 350 BIOMT2 44 -0.952130 0.305694 0.000000 691.50289 REMARK 350 BIOMT3 44 0.000000 0.000000 1.000000 -86.86601 REMARK 350 BIOMT1 45 -0.887011 0.461748 0.000000 598.61038 REMARK 350 BIOMT2 45 -0.461748 -0.887011 0.000000 986.47846 REMARK 350 BIOMT3 45 0.000000 0.000000 1.000000 -83.52500 REMARK 350 BIOMT1 46 -0.604599 -0.796530 0.000000 1008.47412 REMARK 350 BIOMT2 46 0.796530 -0.604599 -0.000001 339.38907 REMARK 350 BIOMT3 46 0.000000 -0.000001 1.000000 -80.18400 REMARK 350 BIOMT1 47 0.683274 -0.730162 0.000000 439.69288 REMARK 350 BIOMT2 47 0.730162 0.683274 0.000000 -173.64304 REMARK 350 BIOMT3 47 0.000000 0.000000 1.000000 -76.84299 REMARK 350 BIOMT1 48 0.834848 0.550481 0.000000 -161.83786 REMARK 350 BIOMT2 48 -0.550481 0.834848 -0.000001 300.56665 REMARK 350 BIOMT3 48 0.000000 0.000001 1.000000 -73.50200 REMARK 350 BIOMT1 49 -0.401948 0.915663 -0.000002 204.24097 REMARK 350 BIOMT2 49 -0.915663 -0.401948 0.000000 973.39655 REMARK 350 BIOMT3 49 -0.000001 0.000002 1.000000 -70.16103 REMARK 350 BIOMT1 50 -0.970296 -0.241922 0.000000 929.13134 REMARK 350 BIOMT2 50 0.241922 -0.970296 0.000000 725.91684 REMARK 350 BIOMT3 50 0.000000 0.000000 1.000000 -66.82001 REMARK 350 BIOMT1 51 0.074979 -0.997185 0.000001 807.32616 REMARK 350 BIOMT2 51 0.997185 0.074979 0.000000 -30.30915 REMARK 350 BIOMT3 51 0.000000 0.000001 1.000000 -63.47901 REMARK 350 BIOMT1 52 0.995562 -0.094108 0.000000 41.38925 REMARK 350 BIOMT2 52 0.094108 0.995562 -0.000001 -37.66066 REMARK 350 BIOMT3 52 0.000000 0.000001 1.000000 -60.13802 REMARK 350 BIOMT1 53 0.260505 0.965473 0.000001 -94.91116 REMARK 350 BIOMT2 53 -0.965473 0.260505 0.000001 716.08592 REMARK 350 BIOMT3 53 0.000001 -0.000001 1.000000 -56.79699 REMARK 350 BIOMT1 54 -0.907778 0.419451 -0.000001 625.09731 REMARK 350 BIOMT2 54 -0.419451 -0.907778 0.000000 977.43566 REMARK 350 BIOMT3 54 0.000000 0.000001 1.000000 -53.45600 REMARK 350 BIOMT1 55 -0.566405 -0.824127 0.000000 1004.02311 REMARK 350 BIOMT2 55 0.824127 -0.566405 0.000000 311.75725 REMARK 350 BIOMT3 55 0.000000 0.000000 1.000000 -50.11499 REMARK 350 BIOMT1 56 0.716910 -0.697165 0.000000 411.70683 REMARK 350 BIOMT2 56 0.697165 0.716910 0.000000 -173.91179 REMARK 350 BIOMT3 56 0.000000 0.000000 1.000000 -46.77400 REMARK 350 BIOMT1 57 0.807990 0.589197 0.000000 -166.81806 REMARK 350 BIOMT2 57 -0.589197 0.807990 0.000000 328.10677 REMARK 350 BIOMT3 57 0.000000 0.000000 1.000000 -43.43300 REMARK 350 BIOMT1 58 -0.444636 0.895711 0.000000 230.54815 REMARK 350 BIOMT2 58 -0.895711 -0.444636 0.000000 982.94548 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 -40.09200 REMARK 350 BIOMT1 59 -0.957822 -0.287361 0.000000 942.97672 REMARK 350 BIOMT2 59 0.287361 -0.957822 -0.000001 701.59367 REMARK 350 BIOMT3 59 0.000001 -0.000001 1.000000 -36.75100 REMARK 350 BIOMT1 60 0.121870 -0.992546 0.000000 785.68377 REMARK 350 BIOMT2 60 0.992546 0.121870 0.000000 -48.05469 REMARK 350 BIOMT3 60 0.000000 0.000000 1.000000 -33.41002 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP D 24 CB CG OD1 OD2 REMARK 470 PRO D 25 CB CG CD REMARK 470 GLU D 26 CB CG CD OE1 OE2 REMARK 470 LYS D 27 CB CG CD CE NZ REMARK 470 VAL D 28 CB CG1 CG2 REMARK 470 LEU D 29 CB CG CD1 CD2 REMARK 470 GLU D 30 CB CG CD OE1 OE2 REMARK 470 GLN D 31 CB CG CD OE1 NE2 REMARK 470 ALA D 32 CB REMARK 470 VAL D 33 CB CG1 CG2 REMARK 470 ILE D 34 CB CG1 CG2 CD1 REMARK 470 ASP D 35 CB CG OD1 OD2 REMARK 470 MET D 36 CB CG SD CE REMARK 470 GLN D 37 CB CG CD OE1 NE2 REMARK 470 GLU D 38 CB CG CD OE1 OE2 REMARK 470 ASP D 39 CB CG OD1 OD2 REMARK 470 LEU D 40 CB CG CD1 CD2 REMARK 470 VAL D 41 CB CG1 CG2 REMARK 470 GLN D 42 CB CG CD OE1 NE2 REMARK 470 LEU D 43 CB CG CD1 CD2 REMARK 470 ARG D 44 CB CG CD NE CZ NH1 NH2 REMARK 470 GLN D 45 CB CG CD OE1 NE2 REMARK 470 ALA D 46 CB REMARK 470 VAL D 47 CB CG1 CG2 REMARK 470 ALA D 48 CB REMARK 470 ARG D 49 CB CG CD NE CZ NH1 NH2 REMARK 470 THR D 50 CB OG1 CG2 REMARK 470 ILE D 51 CB CG1 CG2 CD1 REMARK 470 ALA D 52 CB REMARK 470 GLU D 53 CB CG CD OE1 OE2 REMARK 470 GLU D 54 CB CG CD OE1 OE2 REMARK 470 LYS D 55 CB CG CD CE NZ REMARK 470 ARG D 56 CB CG CD NE CZ NH1 NH2 REMARK 470 THR D 57 CB OG1 CG2 REMARK 470 GLU D 58 CB CG CD OE1 OE2 REMARK 470 GLN D 59 CB CG CD OE1 NE2 REMARK 470 ARG D 60 CB CG CD NE CZ NH1 NH2 REMARK 470 LEU D 61 CB CG CD1 CD2 REMARK 470 ASN D 62 CB CG OD1 ND2 REMARK 470 GLN D 63 CB CG CD OE1 NE2 REMARK 470 ASP D 64 CB CG OD1 OD2 REMARK 470 THR D 65 CB OG1 CG2 REMARK 470 GLN D 66 CB CG CD OE1 NE2 REMARK 470 GLU D 67 CB CG CD OE1 OE2 REMARK 470 ALA D 68 CB REMARK 470 LYS D 69 CB CG CD CE NZ REMARK 470 LYS D 70 CB CG CD CE NZ REMARK 470 TRP D 71 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 470 TRP D 71 CZ2 CZ3 CH2 REMARK 470 GLU D 72 CB CG CD OE1 OE2 REMARK 470 ASP D 73 CB CG OD1 OD2 REMARK 470 ARG D 74 CB CG CD NE CZ NH1 NH2 REMARK 470 ALA D 75 CB REMARK 470 LYS D 76 CB CG CD CE NZ REMARK 470 LEU D 77 CB CG CD1 CD2 REMARK 470 ALA D 78 CB REMARK 470 LEU D 79 CB CG CD1 CD2 REMARK 470 THR D 80 CB OG1 CG2 REMARK 470 ASN D 81 CB CG OD1 ND2 REMARK 470 GLU D 83 CB CG CD OE1 OE2 REMARK 470 GLU D 84 CB CG CD OE1 OE2 REMARK 470 ASN D 85 CB CG OD1 ND2 REMARK 470 LEU D 86 CB CG CD1 CD2 REMARK 470 ALA D 87 CB REMARK 470 ARG D 88 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU D 89 CB CG CD OE1 OE2 REMARK 470 ALA D 90 CB REMARK 470 LEU D 91 CB CG CD1 CD2 REMARK 470 ALA D 92 CB REMARK 470 ARG D 93 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS D 94 CB CG CD CE NZ REMARK 470 LYS D 95 CB CG CD CE NZ REMARK 470 SER D 96 CB OG REMARK 470 LEU D 97 CB CG CD1 CD2 REMARK 470 THR D 98 CB OG1 CG2 REMARK 470 ASP D 99 CB CG OD1 OD2 REMARK 470 THR D 100 CB OG1 CG2 REMARK 470 ALA D 101 CB REMARK 470 ALA D 102 CB REMARK 470 ALA D 103 CB REMARK 470 TYR D 104 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR D 104 OH REMARK 470 GLN D 105 CB CG CD OE1 NE2 REMARK 470 THR D 106 CB OG1 CG2 REMARK 470 GLN D 107 CB CG CD OE1 NE2 REMARK 470 LEU D 108 CB CG CD1 CD2 REMARK 470 ALA D 109 CB REMARK 470 GLN D 110 CB CG CD OE1 NE2 REMARK 470 GLN D 111 CB CG CD OE1 NE2 REMARK 470 ARG D 112 CB CG CD NE CZ NH1 NH2 REMARK 470 THR D 113 CB OG1 CG2 REMARK 470 MET D 114 CB CG SD CE REMARK 470 SER D 115 CB OG REMARK 470 GLU D 116 CB CG CD OE1 OE2 REMARK 470 ASN D 117 CB CG OD1 ND2 REMARK 470 LEU D 118 CB CG CD1 CD2 REMARK 470 ARG D 119 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG D 120 CB CG CD NE CZ NH1 NH2 REMARK 470 ASN D 121 CB CG OD1 ND2 REMARK 470 LEU D 122 CB CG CD1 CD2 REMARK 470 ALA D 123 CB REMARK 470 ALA D 124 CB REMARK 470 LEU D 125 CB CG CD1 CD2 REMARK 470 GLU D 126 CB CG CD OE1 OE2 REMARK 470 ALA D 127 CB REMARK 470 LYS D 128 CB CG CD CE NZ REMARK 470 ILE D 129 CB CG1 CG2 CD1 REMARK 470 SER D 130 CB OG REMARK 470 GLU D 131 CB CG CD OE1 OE2 REMARK 470 ALA D 132 CB REMARK 470 LYS D 133 CB CG CD CE NZ REMARK 470 THR D 134 CB OG1 CG2 REMARK 470 LYS D 135 CB CG CD CE NZ REMARK 470 LYS D 136 CB CG CD CE NZ REMARK 470 ASN D 137 CB CG OD1 ND2 REMARK 470 MET D 138 CB CG SD CE REMARK 470 LEU D 139 CB CG CD1 CD2 REMARK 470 GLN D 140 CB CG CD OE1 NE2 REMARK 470 ALA D 141 CB REMARK 470 ARG D 142 CB CG CD NE CZ NH1 NH2 REMARK 470 ALA D 143 CB REMARK 470 LYS D 144 CB CG CD CE NZ REMARK 470 ALA D 145 CB REMARK 470 ALA D 146 CB REMARK 470 LYS D 147 CB CG CD CE NZ REMARK 470 ALA D 148 CB REMARK 470 ASN D 149 CB CG OD1 ND2 REMARK 470 ALA D 150 CB REMARK 470 GLU D 151 CB CG CD OE1 OE2 REMARK 470 LEU D 152 CB CG CD1 CD2 REMARK 470 GLN D 153 CB CG CD OE1 NE2 REMARK 470 GLN D 154 CB CG CD OE1 NE2 REMARK 470 THR D 155 CB OG1 CG2 REMARK 470 LEU D 156 CB CG CD1 CD2 REMARK 470 LEU D 159 CB CG CD1 CD2 REMARK 470 THR D 161 CB OG1 CG2 REMARK 470 SER D 162 CB OG REMARK 470 SER D 163 CB OG REMARK 470 ALA D 164 CB REMARK 470 THR D 165 CB OG1 CG2 REMARK 470 SER D 166 CB OG REMARK 470 ALA D 167 CB REMARK 470 PHE D 168 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU D 169 CB CG CD OE1 OE2 REMARK 470 ARG D 170 CB CG CD NE CZ NH1 NH2 REMARK 470 MET D 171 CB CG SD CE REMARK 470 GLU D 172 CB CG CD OE1 OE2 REMARK 470 ASN D 173 CB CG OD1 ND2 REMARK 470 LYS D 174 CB CG CD CE NZ REMARK 470 VAL D 175 CB CG1 CG2 REMARK 470 LEU D 176 CB CG CD1 CD2 REMARK 470 ASP D 177 CB CG OD1 OD2 REMARK 470 MET D 178 CB CG SD CE REMARK 470 GLU D 179 CB CG CD OE1 OE2 REMARK 470 ALA D 180 CB REMARK 470 THR D 181 CB OG1 CG2 REMARK 470 SER D 182 CB OG REMARK 470 GLN D 183 CB CG CD OE1 NE2 REMARK 470 ALA D 184 CB REMARK 470 ALA D 185 CB REMARK 470 GLU D 187 CB CG CD OE1 OE2 REMARK 470 LEU D 188 CB CG CD1 CD2 REMARK 470 ALA D 189 CB REMARK 470 PHE D 191 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE D 193 CB CG1 CG2 CD1 REMARK 470 GLU D 194 CB CG CD OE1 OE2 REMARK 470 ASN D 195 CB CG OD1 ND2 REMARK 470 GLN D 196 CB CG CD OE1 NE2 REMARK 470 PHE D 197 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ALA D 198 CB REMARK 470 GLN D 199 CB CG CD OE1 NE2 REMARK 470 LEU D 200 CB CG CD1 CD2 REMARK 470 GLU D 201 CB CG CD OE1 OE2 REMARK 470 ALA D 202 CB REMARK 470 SER D 203 CB OG REMARK 470 SER D 204 CB OG REMARK 470 VAL D 206 CB CG1 CG2 REMARK 470 GLU D 207 CB CG CD OE1 OE2 REMARK 470 ASP D 208 CB CG OD1 OD2 REMARK 470 GLU D 209 CB CG CD OE1 OE2 REMARK 470 LEU D 210 CB CG CD1 CD2 REMARK 470 ALA D 211 CB REMARK 470 ALA D 212 CB REMARK 470 LEU D 213 CB CG CD1 CD2 REMARK 470 LYS D 214 CB CG CD CE NZ REMARK 470 ALA D 215 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU D 83 69.44 -68.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-18431 RELATED DB: EMDB REMARK 900 370A VIPP1 H1-6 HELICAL TUBES DBREF 8QI2 D 24 215 UNP Q55707 VIPP1_SYNY3 24 215 SEQRES 1 D 192 ASP PRO GLU LYS VAL LEU GLU GLN ALA VAL ILE ASP MET SEQRES 2 D 192 GLN GLU ASP LEU VAL GLN LEU ARG GLN ALA VAL ALA ARG SEQRES 3 D 192 THR ILE ALA GLU GLU LYS ARG THR GLU GLN ARG LEU ASN SEQRES 4 D 192 GLN ASP THR GLN GLU ALA LYS LYS TRP GLU ASP ARG ALA SEQRES 5 D 192 LYS LEU ALA LEU THR ASN GLY GLU GLU ASN LEU ALA ARG SEQRES 6 D 192 GLU ALA LEU ALA ARG LYS LYS SER LEU THR ASP THR ALA SEQRES 7 D 192 ALA ALA TYR GLN THR GLN LEU ALA GLN GLN ARG THR MET SEQRES 8 D 192 SER GLU ASN LEU ARG ARG ASN LEU ALA ALA LEU GLU ALA SEQRES 9 D 192 LYS ILE SER GLU ALA LYS THR LYS LYS ASN MET LEU GLN SEQRES 10 D 192 ALA ARG ALA LYS ALA ALA LYS ALA ASN ALA GLU LEU GLN SEQRES 11 D 192 GLN THR LEU GLY GLY LEU GLY THR SER SER ALA THR SER SEQRES 12 D 192 ALA PHE GLU ARG MET GLU ASN LYS VAL LEU ASP MET GLU SEQRES 13 D 192 ALA THR SER GLN ALA ALA GLY GLU LEU ALA GLY PHE GLY SEQRES 14 D 192 ILE GLU ASN GLN PHE ALA GLN LEU GLU ALA SER SER GLY SEQRES 15 D 192 VAL GLU ASP GLU LEU ALA ALA LEU LYS ALA HELIX 1 AA1 ASP D 24 ASN D 81 1 58 HELIX 2 AA2 GLU D 83 GLY D 158 1 76 HELIX 3 AA3 GLY D 160 SER D 163 5 4 HELIX 4 AA4 ALA D 164 GLU D 187 1 24 HELIX 5 AA5 GLY D 192 ALA D 215 1 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000