HEADER LIGASE 13-SEP-23 8QIC TITLE STRUCTURE-BASED IDENTIFICATION OF SALICYLIC ACID DERIVATIVES AS TITLE 2 MALARIAL THREONYL TRNA-SYNTHETASE INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREONINE--TRNA LIGASE; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O8; SOURCE 3 ORGANISM_TAXID: 585034; SOURCE 4 GENE: THRS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS THREONYL TRNA-SYNTHETASE, MALARIA, PLASMODIUM FALCIPARUM, SALICYLIC KEYWDS 2 ACID, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.RODRIGUEZ,E.PARISINI REVDAT 1 10-APR-24 8QIC 0 JRNL AUTH R.BOBROVS,J.BOLSAKOVA,J.A.R.BUITRAGO,L.VARACEVA,M.SKVORCOVA, JRNL AUTH 2 I.KANEPE,A.RUDNICKIHA,E.PARISINI,A.JIRGENSONS JRNL TITL STRUCTURE-BASED IDENTIFICATION OF SALICYLIC ACID DERIVATIVES JRNL TITL 2 AS MALARIAL THREONYL TRNA-SYNTHETASE INHIBITORS. JRNL REF PLOS ONE V. 19 96995 2024 JRNL REFN ESSN 1932-6203 JRNL PMID 38558084 JRNL DOI 10.1371/JOURNAL.PONE.0296995 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 35571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1932 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2509 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6532 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.23000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.431 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.258 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.181 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.512 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6752 ; 0.011 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 6308 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9090 ; 1.311 ; 1.797 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14520 ; 0.460 ; 1.566 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 858 ; 6.958 ; 5.350 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 6 ;41.102 ;20.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1220 ;14.304 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 946 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7980 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1660 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3198 ; 2.428 ; 1.803 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3198 ; 2.416 ; 1.804 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3994 ; 3.695 ; 3.237 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3995 ; 3.696 ; 3.239 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3554 ; 4.275 ; 2.312 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3555 ; 4.274 ; 2.314 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5097 ; 6.325 ; 4.018 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7420 ; 8.807 ;17.860 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7418 ; 8.806 ;17.860 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 401 REMARK 3 ORIGIN FOR THE GROUP (A): -22.1300 -21.4220 26.8390 REMARK 3 T TENSOR REMARK 3 T11: 0.1805 T22: 0.0286 REMARK 3 T33: 0.0178 T12: 0.0100 REMARK 3 T13: 0.0146 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.9773 L22: 1.1419 REMARK 3 L33: 1.1321 L12: -0.1864 REMARK 3 L13: 0.6299 L23: 0.0410 REMARK 3 S TENSOR REMARK 3 S11: -0.0436 S12: -0.1282 S13: 0.0747 REMARK 3 S21: 0.1656 S22: -0.0201 S23: -0.0888 REMARK 3 S31: -0.0683 S32: -0.0222 S33: 0.0637 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): -16.6140 -44.9180 22.9450 REMARK 3 T TENSOR REMARK 3 T11: 0.1784 T22: 0.0316 REMARK 3 T33: 0.0107 T12: -0.0112 REMARK 3 T13: -0.0291 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.4041 L22: 0.6792 REMARK 3 L33: 1.0330 L12: -0.0365 REMARK 3 L13: -0.5672 L23: -0.0321 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: -0.0100 S13: -0.0842 REMARK 3 S21: 0.0988 S22: -0.0279 S23: -0.0100 REMARK 3 S31: 0.1062 S32: 0.0661 S33: -0.0018 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 8QIC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292133315. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS V1.0 REMARK 200 DATA SCALING SOFTWARE : XIA2 V1.0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47446 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 79.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 72.6 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER V1.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG 4000, 18% (V/V) MPD, AND REMARK 280 0.1 M SODIUM CITRATE PH 5.9, EVAPORATION, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.89000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.98500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.98500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.89000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 VL0 D 501 ZN ZN D 505 1.19 REMARK 500 O3 VL0 A 501 ZN ZN A 503 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 72 11.74 -142.90 REMARK 500 CYS A 239 -95.48 -118.03 REMARK 500 ASN A 261 14.04 98.54 REMARK 500 GLU A 400 -111.77 124.29 REMARK 500 ALA D 19 71.93 -150.59 REMARK 500 TYR D 72 12.72 -141.46 REMARK 500 CYS D 239 -93.18 -118.07 REMARK 500 ASN D 261 12.41 99.93 REMARK 500 GLU D 400 -105.83 123.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 398 LEU A 399 142.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 60 0.13 SIDE CHAIN REMARK 500 ARG A 122 0.09 SIDE CHAIN REMARK 500 ARG A 235 0.08 SIDE CHAIN REMARK 500 ARG A 348 0.08 SIDE CHAIN REMARK 500 ARG A 371 0.14 SIDE CHAIN REMARK 500 ARG D 60 0.13 SIDE CHAIN REMARK 500 ARG D 122 0.08 SIDE CHAIN REMARK 500 ARG D 235 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 628 DISTANCE = 6.49 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 93 SG REMARK 620 2 HIS A 144 NE2 94.8 REMARK 620 3 HIS A 270 ND1 102.3 99.5 REMARK 620 4 VL0 A 501 O2 142.7 86.4 114.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 93 SG REMARK 620 2 HIS D 144 NE2 93.2 REMARK 620 3 HIS D 270 ND1 97.9 101.6 REMARK 620 4 VL0 D 501 O3 145.5 97.6 111.6 REMARK 620 N 1 2 3 DBREF 8QIC A 2 401 UNP B7M1C7 SYT_ECO8A 243 642 DBREF 8QIC D 2 401 UNP B7M1C7 SYT_ECO8A 243 642 SEQRES 1 A 400 ASP HIS ARG LYS ILE GLY LYS GLN LEU ASP LEU TYR HIS SEQRES 2 A 400 MET GLN GLU GLU ALA PRO GLY MET VAL PHE TRP HIS ASN SEQRES 3 A 400 ASP GLY TRP THR ILE PHE ARG GLU LEU GLU VAL PHE VAL SEQRES 4 A 400 ARG SER LYS LEU LYS GLU TYR GLN TYR GLN GLU VAL LYS SEQRES 5 A 400 GLY PRO PHE MET MET ASP ARG VAL LEU TRP GLU LYS THR SEQRES 6 A 400 GLY HIS TRP ASP ASN TYR LYS ASP ALA MET PHE THR THR SEQRES 7 A 400 SER SER GLU ASN ARG GLU TYR CYS ILE LYS PRO MET ASN SEQRES 8 A 400 CYS PRO GLY HIS VAL GLN ILE PHE ASN GLN GLY LEU LYS SEQRES 9 A 400 SER TYR ARG ASP LEU PRO LEU ARG MET ALA GLU PHE GLY SEQRES 10 A 400 SER CYS HIS ARG ASN GLU PRO SER GLY SER LEU HIS GLY SEQRES 11 A 400 LEU MET ARG VAL ARG GLY PHE THR GLN ASP ASP ALA HIS SEQRES 12 A 400 ILE PHE CYS THR GLU GLU GLN ILE ARG ASP GLU VAL ASN SEQRES 13 A 400 GLY CYS ILE ARG LEU VAL TYR ASP MET TYR SER THR PHE SEQRES 14 A 400 GLY PHE GLU LYS ILE VAL VAL LYS LEU SER THR ARG PRO SEQRES 15 A 400 GLU LYS ARG ILE GLY SER ASP GLU MET TRP ASP ARG ALA SEQRES 16 A 400 GLU ALA ASP LEU ALA VAL ALA LEU GLU GLU ASN ASN ILE SEQRES 17 A 400 PRO PHE GLU TYR GLN LEU GLY GLU GLY ALA PHE TYR GLY SEQRES 18 A 400 PRO LYS ILE GLU PHE THR LEU TYR ASP CYS LEU ASP ARG SEQRES 19 A 400 ALA TRP GLN CYS GLY THR VAL GLN LEU ASP PHE SER LEU SEQRES 20 A 400 PRO SER ARG LEU SER ALA SER TYR VAL GLY GLU ASP ASN SEQRES 21 A 400 GLU ARG LYS VAL PRO VAL MET ILE HIS ARG ALA ILE LEU SEQRES 22 A 400 GLY SER MET GLU ARG PHE ILE GLY ILE LEU THR GLU GLU SEQRES 23 A 400 PHE ALA GLY PHE PHE PRO THR TRP LEU ALA PRO VAL GLN SEQRES 24 A 400 VAL VAL ILE MET ASN ILE THR ASP SER GLN SER GLU TYR SEQRES 25 A 400 VAL ASN GLU LEU THR GLN LYS LEU SER ASN ALA GLY ILE SEQRES 26 A 400 ARG VAL LYS ALA ASP LEU ARG ASN GLU LYS ILE GLY PHE SEQRES 27 A 400 LYS ILE ARG GLU HIS THR LEU ARG ARG VAL PRO TYR MET SEQRES 28 A 400 LEU VAL CYS GLY ASP LYS GLU VAL GLU SER GLY LYS VAL SEQRES 29 A 400 ALA VAL ARG THR ARG ARG GLY LYS ASP LEU GLY SER MET SEQRES 30 A 400 ASP VAL ASN GLU VAL ILE GLU LYS LEU GLN GLN GLU ILE SEQRES 31 A 400 ARG SER ARG SER LEU LYS GLN LEU GLU GLU SEQRES 1 D 400 ASP HIS ARG LYS ILE GLY LYS GLN LEU ASP LEU TYR HIS SEQRES 2 D 400 MET GLN GLU GLU ALA PRO GLY MET VAL PHE TRP HIS ASN SEQRES 3 D 400 ASP GLY TRP THR ILE PHE ARG GLU LEU GLU VAL PHE VAL SEQRES 4 D 400 ARG SER LYS LEU LYS GLU TYR GLN TYR GLN GLU VAL LYS SEQRES 5 D 400 GLY PRO PHE MET MET ASP ARG VAL LEU TRP GLU LYS THR SEQRES 6 D 400 GLY HIS TRP ASP ASN TYR LYS ASP ALA MET PHE THR THR SEQRES 7 D 400 SER SER GLU ASN ARG GLU TYR CYS ILE LYS PRO MET ASN SEQRES 8 D 400 CYS PRO GLY HIS VAL GLN ILE PHE ASN GLN GLY LEU LYS SEQRES 9 D 400 SER TYR ARG ASP LEU PRO LEU ARG MET ALA GLU PHE GLY SEQRES 10 D 400 SER CYS HIS ARG ASN GLU PRO SER GLY SER LEU HIS GLY SEQRES 11 D 400 LEU MET ARG VAL ARG GLY PHE THR GLN ASP ASP ALA HIS SEQRES 12 D 400 ILE PHE CYS THR GLU GLU GLN ILE ARG ASP GLU VAL ASN SEQRES 13 D 400 GLY CYS ILE ARG LEU VAL TYR ASP MET TYR SER THR PHE SEQRES 14 D 400 GLY PHE GLU LYS ILE VAL VAL LYS LEU SER THR ARG PRO SEQRES 15 D 400 GLU LYS ARG ILE GLY SER ASP GLU MET TRP ASP ARG ALA SEQRES 16 D 400 GLU ALA ASP LEU ALA VAL ALA LEU GLU GLU ASN ASN ILE SEQRES 17 D 400 PRO PHE GLU TYR GLN LEU GLY GLU GLY ALA PHE TYR GLY SEQRES 18 D 400 PRO LYS ILE GLU PHE THR LEU TYR ASP CYS LEU ASP ARG SEQRES 19 D 400 ALA TRP GLN CYS GLY THR VAL GLN LEU ASP PHE SER LEU SEQRES 20 D 400 PRO SER ARG LEU SER ALA SER TYR VAL GLY GLU ASP ASN SEQRES 21 D 400 GLU ARG LYS VAL PRO VAL MET ILE HIS ARG ALA ILE LEU SEQRES 22 D 400 GLY SER MET GLU ARG PHE ILE GLY ILE LEU THR GLU GLU SEQRES 23 D 400 PHE ALA GLY PHE PHE PRO THR TRP LEU ALA PRO VAL GLN SEQRES 24 D 400 VAL VAL ILE MET ASN ILE THR ASP SER GLN SER GLU TYR SEQRES 25 D 400 VAL ASN GLU LEU THR GLN LYS LEU SER ASN ALA GLY ILE SEQRES 26 D 400 ARG VAL LYS ALA ASP LEU ARG ASN GLU LYS ILE GLY PHE SEQRES 27 D 400 LYS ILE ARG GLU HIS THR LEU ARG ARG VAL PRO TYR MET SEQRES 28 D 400 LEU VAL CYS GLY ASP LYS GLU VAL GLU SER GLY LYS VAL SEQRES 29 D 400 ALA VAL ARG THR ARG ARG GLY LYS ASP LEU GLY SER MET SEQRES 30 D 400 ASP VAL ASN GLU VAL ILE GLU LYS LEU GLN GLN GLU ILE SEQRES 31 D 400 ARG SER ARG SER LEU LYS GLN LEU GLU GLU HET VL0 A 501 27 HET GOL A 502 6 HET ZN A 503 1 HET VL0 D 501 27 HET GOL D 502 6 HET GOL D 503 6 HET GOL D 504 6 HET ZN D 505 1 HETNAM VL0 2-OXIDANYL-5-[[4-(PHENYLMETHYL)PHENYL]SULFAMOYL]BENZOIC HETNAM 2 VL0 ACID HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 VL0 2(C20 H17 N O5 S) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 5 ZN 2(ZN 2+) FORMUL 11 HOH *47(H2 O) HELIX 1 AA1 ASP A 2 LEU A 10 1 9 HELIX 2 AA2 HIS A 26 TYR A 47 1 22 HELIX 3 AA3 ARG A 60 THR A 66 1 7 HELIX 4 AA4 GLY A 67 LYS A 73 1 7 HELIX 5 AA5 ASP A 74 MET A 76 5 3 HELIX 6 AA6 ASN A 92 ASN A 101 1 10 HELIX 7 AA7 SER A 106 LEU A 110 5 5 HELIX 8 AA8 PRO A 125 LEU A 129 5 5 HELIX 9 AA9 THR A 148 GLU A 150 5 3 HELIX 10 AB1 GLN A 151 PHE A 170 1 20 HELIX 11 AB2 SER A 189 ASN A 207 1 19 HELIX 12 AB3 SER A 247 LEU A 252 1 6 HELIX 13 AB4 MET A 277 ALA A 289 1 13 HELIX 14 AB5 THR A 307 SER A 309 5 3 HELIX 15 AB6 GLN A 310 ALA A 324 1 15 HELIX 16 AB7 LYS A 336 ARG A 347 1 12 HELIX 17 AB8 GLY A 356 GLY A 363 1 8 HELIX 18 AB9 VAL A 380 SER A 393 1 14 HELIX 19 AC1 HIS D 3 LEU D 10 1 8 HELIX 20 AC2 HIS D 26 TYR D 47 1 22 HELIX 21 AC3 ARG D 60 THR D 66 1 7 HELIX 22 AC4 GLY D 67 LYS D 73 1 7 HELIX 23 AC5 ASP D 74 MET D 76 5 3 HELIX 24 AC6 ASN D 92 ASN D 101 1 10 HELIX 25 AC7 SER D 106 LEU D 110 5 5 HELIX 26 AC8 PRO D 125 LEU D 129 5 5 HELIX 27 AC9 THR D 148 GLU D 150 5 3 HELIX 28 AD1 GLN D 151 PHE D 170 1 20 HELIX 29 AD2 SER D 189 ASN D 207 1 19 HELIX 30 AD3 SER D 247 LEU D 252 1 6 HELIX 31 AD4 MET D 277 ALA D 289 1 13 HELIX 32 AD5 THR D 307 SER D 309 5 3 HELIX 33 AD6 GLN D 310 ALA D 324 1 15 HELIX 34 AD7 LYS D 336 ARG D 347 1 12 HELIX 35 AD8 GLY D 356 GLY D 363 1 8 HELIX 36 AD9 VAL D 380 SER D 393 1 14 SHEET 1 AA1 2 TYR A 13 HIS A 14 0 SHEET 2 AA1 2 PHE A 24 TRP A 25 -1 O PHE A 24 N HIS A 14 SHEET 1 AA2 8 GLN A 50 GLU A 51 0 SHEET 2 AA2 8 LEU A 112 HIS A 121 1 O ARG A 113 N GLN A 50 SHEET 3 AA2 8 GLY A 137 CYS A 147 -1 O PHE A 138 N CYS A 120 SHEET 4 AA2 8 VAL A 267 SER A 276 -1 O VAL A 267 N CYS A 147 SHEET 5 AA2 8 ALA A 236 ASP A 245 -1 N GLN A 243 O HIS A 270 SHEET 6 AA2 8 LYS A 224 TYR A 230 -1 N PHE A 227 O GLY A 240 SHEET 7 AA2 8 VAL A 176 SER A 180 -1 N VAL A 176 O THR A 228 SHEET 8 AA2 8 PHE A 211 GLN A 214 1 O GLN A 214 N LEU A 179 SHEET 1 AA3 3 MET A 57 ASP A 59 0 SHEET 2 AA3 3 ARG A 84 ILE A 88 -1 O CYS A 87 N MET A 58 SHEET 3 AA3 3 THR A 78 SER A 81 -1 N THR A 79 O TYR A 86 SHEET 1 AA4 2 TYR A 256 VAL A 257 0 SHEET 2 AA4 2 ARG A 263 LYS A 264 -1 O LYS A 264 N TYR A 256 SHEET 1 AA5 5 VAL A 328 ASP A 331 0 SHEET 2 AA5 5 VAL A 301 ASN A 305 1 N ILE A 303 O ASP A 331 SHEET 3 AA5 5 TYR A 351 CYS A 355 1 O LEU A 353 N MET A 304 SHEET 4 AA5 5 LYS A 364 THR A 369 -1 O ALA A 366 N VAL A 354 SHEET 5 AA5 5 ASP A 374 ASP A 379 -1 O GLY A 376 N VAL A 367 SHEET 1 AA6 2 TYR D 13 HIS D 14 0 SHEET 2 AA6 2 PHE D 24 TRP D 25 -1 O PHE D 24 N HIS D 14 SHEET 1 AA7 8 GLN D 50 GLU D 51 0 SHEET 2 AA7 8 LEU D 112 HIS D 121 1 O ARG D 113 N GLN D 50 SHEET 3 AA7 8 GLY D 137 CYS D 147 -1 O PHE D 138 N CYS D 120 SHEET 4 AA7 8 VAL D 267 SER D 276 -1 O VAL D 267 N CYS D 147 SHEET 5 AA7 8 ALA D 236 ASP D 245 -1 N GLN D 243 O HIS D 270 SHEET 6 AA7 8 LYS D 224 TYR D 230 -1 N PHE D 227 O GLY D 240 SHEET 7 AA7 8 VAL D 176 SER D 180 -1 N VAL D 176 O THR D 228 SHEET 8 AA7 8 GLU D 212 GLN D 214 1 O GLN D 214 N LEU D 179 SHEET 1 AA8 3 MET D 57 ASP D 59 0 SHEET 2 AA8 3 ARG D 84 ILE D 88 -1 O CYS D 87 N MET D 58 SHEET 3 AA8 3 THR D 78 SER D 81 -1 N THR D 79 O TYR D 86 SHEET 1 AA9 2 TYR D 256 VAL D 257 0 SHEET 2 AA9 2 ARG D 263 LYS D 264 -1 O LYS D 264 N TYR D 256 SHEET 1 AB1 5 VAL D 328 ASP D 331 0 SHEET 2 AB1 5 VAL D 301 ASN D 305 1 N ILE D 303 O ASP D 331 SHEET 3 AB1 5 TYR D 351 CYS D 355 1 O LEU D 353 N MET D 304 SHEET 4 AB1 5 LYS D 364 THR D 369 -1 O ALA D 366 N VAL D 354 SHEET 5 AB1 5 ASP D 374 ASP D 379 -1 O GLY D 376 N VAL D 367 LINK SG CYS A 93 ZN ZN A 503 1555 1555 2.38 LINK NE2 HIS A 144 ZN ZN A 503 1555 1555 2.04 LINK ND1 HIS A 270 ZN ZN A 503 1555 1555 2.05 LINK O2 VL0 A 501 ZN ZN A 503 1555 1555 2.33 LINK SG CYS D 93 ZN ZN D 505 1555 1555 2.48 LINK NE2 HIS D 144 ZN ZN D 505 1555 1555 1.97 LINK ND1 HIS D 270 ZN ZN D 505 1555 1555 2.07 LINK O3 VL0 D 501 ZN ZN D 505 1555 1555 2.59 CISPEP 1 LEU A 110 PRO A 111 0 0.19 CISPEP 2 LEU D 110 PRO D 111 0 1.97 CRYST1 85.780 110.500 113.970 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011658 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008774 0.00000