HEADER TRANSFERASE 12-SEP-23 8QJ5 TITLE CRYSTAL STRUCTURE OF THE LEVANSUCRASE BETA FROM PSEUDOMONAS SYRINGAE TITLE 2 PV. ACTINIDIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE 5-KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LEVANSUCRASE; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: GENBANK ACCESSION CODE AOE59821.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. ACTINIDIAE; SOURCE 3 ORGANISM_TAXID: 103796; SOURCE 4 GENE: KPSA3_07534; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIK28-BSA4 KEYWDS BETA-PROPELLER, LEVAN, GLYCOSIDE HYDROLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FERRARONI,L.PERITORE REVDAT 1 25-SEP-24 8QJ5 0 JRNL AUTH M.FERRARONI,L.PERITORE,C.MATASSINI,S.LUTI,F.CARDONA,P.PAOLO JRNL TITL CRYSTAL STRUCTURE OF THE LEVANSUCRASE BETA FROM PSEUDOMONAS JRNL TITL 2 SYRINGAE PV. ACTINIDIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 103851 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5420 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7632 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 403 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6421 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 639 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.914 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6797 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9276 ; 1.812 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 851 ; 6.791 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 370 ;31.185 ;22.162 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1011 ;12.506 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;16.470 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 850 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5351 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3320 ; 2.024 ; 2.082 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4152 ; 2.828 ; 3.112 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3477 ; 3.487 ; 2.419 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10475 ; 6.037 ;29.930 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QJ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292133298. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109338 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 61.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.430 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.53 REMARK 200 R MERGE FOR SHELL (I) : 1.09000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 100MM SODIUM REMARK 280 THIOCIANATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.31500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 LEU A 8 REMARK 465 SER A 9 REMARK 465 GLN A 10 REMARK 465 LEU A 11 REMARK 465 LYS A 12 REMARK 465 ASN A 13 REMARK 465 SER A 14 REMARK 465 PRO A 15 REMARK 465 LEU A 16 REMARK 465 ALA A 17 REMARK 465 GLY A 18 REMARK 465 ASN A 19 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 ALA B 7 REMARK 465 LEU B 8 REMARK 465 SER B 9 REMARK 465 GLN B 10 REMARK 465 LEU B 11 REMARK 465 LYS B 12 REMARK 465 ASN B 13 REMARK 465 SER B 14 REMARK 465 PRO B 15 REMARK 465 LEU B 16 REMARK 465 ALA B 17 REMARK 465 GLY B 18 REMARK 465 ASN B 19 REMARK 465 ILE B 20 REMARK 465 ASN B 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 157 CE NZ REMARK 470 GLN A 185 CG CD OE1 NE2 REMARK 470 GLU A 242 CD OE1 OE2 REMARK 470 LYS A 279 CD CE NZ REMARK 470 GLU A 362 CD OE1 OE2 REMARK 470 LYS B 157 CE NZ REMARK 470 GLN B 185 CG CD OE1 NE2 REMARK 470 GLU B 242 CD OE1 OE2 REMARK 470 LYS B 279 CE NZ REMARK 470 GLU B 362 CD OE1 OE2 REMARK 470 GLU B 390 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 850 O HOH A 903 2.01 REMARK 500 NE ARG A 107 O HOH A 601 2.06 REMARK 500 O HOH A 656 O HOH A 907 2.09 REMARK 500 O HOH B 812 O HOH B 898 2.09 REMARK 500 O HOH A 741 O HOH A 910 2.09 REMARK 500 O HOH A 839 O HOH A 869 2.10 REMARK 500 O HOH A 877 O HOH A 923 2.11 REMARK 500 OE2 GLU B 200 O HOH B 601 2.11 REMARK 500 O HOH B 609 O HOH B 872 2.12 REMARK 500 O HOH B 605 O HOH B 679 2.14 REMARK 500 O HOH B 758 O HOH B 900 2.15 REMARK 500 O HOH A 618 O HOH A 863 2.17 REMARK 500 O HOH A 862 O HOH A 905 2.17 REMARK 500 O HOH B 882 O HOH B 903 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 881 O HOH B 620 2556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 304 CG - CD - NE ANGL. DEV. = -18.9 DEGREES REMARK 500 ARG B 29 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 348 CG - CD - NE ANGL. DEV. = 13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 61 -109.86 -145.42 REMARK 500 SER A 123 143.83 -170.22 REMARK 500 THR A 168 104.88 75.13 REMARK 500 ASN A 212 112.52 -165.18 REMARK 500 ASP A 219 67.34 70.54 REMARK 500 VAL A 270 42.07 -141.69 REMARK 500 VAL A 298 -59.56 -129.58 REMARK 500 ARG A 304 58.21 34.72 REMARK 500 ALA A 352 -40.58 74.01 REMARK 500 ASP A 383 -80.27 -98.91 REMARK 500 GLN A 414 -141.51 -124.54 REMARK 500 TRP B 61 -110.30 -145.52 REMARK 500 THR B 168 105.25 69.10 REMARK 500 ASN B 212 111.84 -164.73 REMARK 500 ASP B 219 65.68 70.60 REMARK 500 VAL B 270 38.03 -140.17 REMARK 500 VAL B 298 -58.56 -127.59 REMARK 500 ARG B 304 60.79 29.91 REMARK 500 ALA B 352 -39.55 73.72 REMARK 500 ASP B 383 -79.94 -101.39 REMARK 500 GLN B 414 -140.28 -122.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P4K A 502 DBREF1 8QJ5 A 1 431 UNP A0A2V0R8Q9_PSESF DBREF2 8QJ5 A A0A2V0R8Q9 1 431 DBREF1 8QJ5 B 1 431 UNP A0A2V0R8Q9_PSESF DBREF2 8QJ5 B A0A2V0R8Q9 1 431 SEQADV 8QJ5 SER A 0 UNP A0A2V0R8Q EXPRESSION TAG SEQADV 8QJ5 SER B 0 UNP A0A2V0R8Q EXPRESSION TAG SEQRES 1 A 432 SER MET SER THR SER SER SER ALA LEU SER GLN LEU LYS SEQRES 2 A 432 ASN SER PRO LEU ALA GLY ASN ILE ASN TYR GLU PRO THR SEQRES 3 A 432 VAL TRP SER ARG ALA ASP ALA LEU LYS VAL ASN GLU ASN SEQRES 4 A 432 ASP PRO THR THR THR GLN PRO LEU VAL SER ALA ASP PHE SEQRES 5 A 432 PRO VAL MET SER ASP THR VAL PHE ILE TRP ASP THR MET SEQRES 6 A 432 PRO LEU ARG GLU LEU ASP GLY THR VAL VAL SER VAL ASN SEQRES 7 A 432 GLY TRP SER VAL ILE LEU THR LEU THR ALA ASP ARG HIS SEQRES 8 A 432 PRO ASP ASP PRO GLN TYR LEU ASP ALA ASN GLY ARG TYR SEQRES 9 A 432 ASP ILE LYS ARG ASP TRP GLU ASP ARG HIS GLY ARG ALA SEQRES 10 A 432 ARG MET CYS TYR TRP TYR SER ARG THR GLY LYS ASP TRP SEQRES 11 A 432 ILE PHE GLY GLY ARG VAL MET ALA GLU GLY VAL SER PRO SEQRES 12 A 432 THR THR ARG GLU TRP ALA GLY THR PRO ILE LEU LEU ASN SEQRES 13 A 432 ASP LYS GLY ASP ILE ASP LEU TYR TYR THR CYS VAL THR SEQRES 14 A 432 PRO GLY ALA ALA ILE ALA LYS VAL ARG GLY ARG ILE VAL SEQRES 15 A 432 THR SER ASP GLN GLY VAL GLU LEU LYS ASP PHE THR GLN SEQRES 16 A 432 VAL LYS LYS LEU PHE GLU ALA ASP GLY THR TYR TYR GLN SEQRES 17 A 432 THR GLU ALA GLN ASN SER SER TRP ASN PHE ARG ASP PRO SEQRES 18 A 432 SER PRO PHE ILE ASP PRO ASN ASP GLY LYS LEU TYR MET SEQRES 19 A 432 VAL PHE GLU GLY ASN VAL ALA GLY GLU ARG GLY SER HIS SEQRES 20 A 432 THR VAL GLY ALA ALA GLU LEU GLY PRO VAL PRO PRO GLY SEQRES 21 A 432 HIS GLU ASP VAL GLY GLY ALA ARG PHE GLN VAL GLY CYS SEQRES 22 A 432 ILE GLY LEU ALA VAL ALA LYS ASP LEU SER GLY GLU GLU SEQRES 23 A 432 TRP GLU ILE LEU PRO PRO LEU VAL THR ALA VAL GLY VAL SEQRES 24 A 432 ASN ASP GLN THR GLU ARG PRO HIS TYR ILE PHE GLN ASP SEQRES 25 A 432 GLY LYS TYR TYR LEU PHE THR ILE SER HIS LYS PHE THR SEQRES 26 A 432 TYR ALA GLU GLY LEU GLU GLY PRO ASP GLY VAL TYR GLY SEQRES 27 A 432 PHE VAL GLY GLU HIS LEU PHE GLY PRO TYR ARG PRO MET SEQRES 28 A 432 ASN ALA SER GLY LEU VAL LEU GLY ASN PRO PRO GLU GLN SEQRES 29 A 432 PRO PHE GLN THR TYR SER HIS CYS VAL MET PRO ASN GLY SEQRES 30 A 432 LEU VAL THR SER PHE ILE ASP SER VAL PRO THR ASP GLY SEQRES 31 A 432 GLU ASP TYR ARG ILE GLY GLY THR GLU ALA PRO THR VAL SEQRES 32 A 432 ARG ILE VAL LEU LYS GLY ASP ARG SER PHE VAL GLN GLU SEQRES 33 A 432 GLU TYR ASP TYR GLY TYR ILE PRO ALA MET LYS ASP VAL SEQRES 34 A 432 GLN LEU SER SEQRES 1 B 432 SER MET SER THR SER SER SER ALA LEU SER GLN LEU LYS SEQRES 2 B 432 ASN SER PRO LEU ALA GLY ASN ILE ASN TYR GLU PRO THR SEQRES 3 B 432 VAL TRP SER ARG ALA ASP ALA LEU LYS VAL ASN GLU ASN SEQRES 4 B 432 ASP PRO THR THR THR GLN PRO LEU VAL SER ALA ASP PHE SEQRES 5 B 432 PRO VAL MET SER ASP THR VAL PHE ILE TRP ASP THR MET SEQRES 6 B 432 PRO LEU ARG GLU LEU ASP GLY THR VAL VAL SER VAL ASN SEQRES 7 B 432 GLY TRP SER VAL ILE LEU THR LEU THR ALA ASP ARG HIS SEQRES 8 B 432 PRO ASP ASP PRO GLN TYR LEU ASP ALA ASN GLY ARG TYR SEQRES 9 B 432 ASP ILE LYS ARG ASP TRP GLU ASP ARG HIS GLY ARG ALA SEQRES 10 B 432 ARG MET CYS TYR TRP TYR SER ARG THR GLY LYS ASP TRP SEQRES 11 B 432 ILE PHE GLY GLY ARG VAL MET ALA GLU GLY VAL SER PRO SEQRES 12 B 432 THR THR ARG GLU TRP ALA GLY THR PRO ILE LEU LEU ASN SEQRES 13 B 432 ASP LYS GLY ASP ILE ASP LEU TYR TYR THR CYS VAL THR SEQRES 14 B 432 PRO GLY ALA ALA ILE ALA LYS VAL ARG GLY ARG ILE VAL SEQRES 15 B 432 THR SER ASP GLN GLY VAL GLU LEU LYS ASP PHE THR GLN SEQRES 16 B 432 VAL LYS LYS LEU PHE GLU ALA ASP GLY THR TYR TYR GLN SEQRES 17 B 432 THR GLU ALA GLN ASN SER SER TRP ASN PHE ARG ASP PRO SEQRES 18 B 432 SER PRO PHE ILE ASP PRO ASN ASP GLY LYS LEU TYR MET SEQRES 19 B 432 VAL PHE GLU GLY ASN VAL ALA GLY GLU ARG GLY SER HIS SEQRES 20 B 432 THR VAL GLY ALA ALA GLU LEU GLY PRO VAL PRO PRO GLY SEQRES 21 B 432 HIS GLU ASP VAL GLY GLY ALA ARG PHE GLN VAL GLY CYS SEQRES 22 B 432 ILE GLY LEU ALA VAL ALA LYS ASP LEU SER GLY GLU GLU SEQRES 23 B 432 TRP GLU ILE LEU PRO PRO LEU VAL THR ALA VAL GLY VAL SEQRES 24 B 432 ASN ASP GLN THR GLU ARG PRO HIS TYR ILE PHE GLN ASP SEQRES 25 B 432 GLY LYS TYR TYR LEU PHE THR ILE SER HIS LYS PHE THR SEQRES 26 B 432 TYR ALA GLU GLY LEU GLU GLY PRO ASP GLY VAL TYR GLY SEQRES 27 B 432 PHE VAL GLY GLU HIS LEU PHE GLY PRO TYR ARG PRO MET SEQRES 28 B 432 ASN ALA SER GLY LEU VAL LEU GLY ASN PRO PRO GLU GLN SEQRES 29 B 432 PRO PHE GLN THR TYR SER HIS CYS VAL MET PRO ASN GLY SEQRES 30 B 432 LEU VAL THR SER PHE ILE ASP SER VAL PRO THR ASP GLY SEQRES 31 B 432 GLU ASP TYR ARG ILE GLY GLY THR GLU ALA PRO THR VAL SEQRES 32 B 432 ARG ILE VAL LEU LYS GLY ASP ARG SER PHE VAL GLN GLU SEQRES 33 B 432 GLU TYR ASP TYR GLY TYR ILE PRO ALA MET LYS ASP VAL SEQRES 34 B 432 GLN LEU SER HET PO4 A 501 5 HET P4K A 502 21 HET ACT A 503 4 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET PO4 B 501 5 HET SCN B 502 3 HET MES B 503 12 HET GOL B 504 6 HET GOL B 505 6 HET GOL B 506 6 HET GOL B 507 6 HETNAM PO4 PHOSPHATE ION HETNAM P4K POLYETHYLENE GLYCOL HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM SCN THIOCYANATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN P4K 3,6,9,12,15,18,21,24,27,30,33,36,39,42- HETSYN 2 P4K TETRADECAOXATETRATETRACONTAN-1-OL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 P4K C30 H62 O15 FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 GOL 8(C3 H8 O3) FORMUL 11 SCN C N S 1- FORMUL 12 MES C6 H13 N O4 S FORMUL 17 HOH *639(H2 O) HELIX 1 AA1 SER A 28 LEU A 33 1 6 HELIX 2 AA2 ASP A 39 THR A 43 5 5 HELIX 3 AA3 ASP A 93 LEU A 97 5 5 HELIX 4 AA4 ASP A 104 ASP A 111 1 8 HELIX 5 AA5 ARG A 112 ALA A 116 5 5 HELIX 6 AA6 GLY A 249 GLY A 254 1 6 HELIX 7 AA7 GLY A 265 GLN A 269 5 5 HELIX 8 AA8 HIS A 321 TYR A 325 5 5 HELIX 9 AA9 ASP A 388 GLU A 390 5 3 HELIX 10 AB1 SER B 28 LEU B 33 1 6 HELIX 11 AB2 ASP B 39 THR B 43 5 5 HELIX 12 AB3 ASP B 93 LEU B 97 5 5 HELIX 13 AB4 ASP B 104 ASP B 111 1 8 HELIX 14 AB5 ARG B 112 ALA B 116 5 5 HELIX 15 AB6 GLY B 249 GLY B 254 1 6 HELIX 16 AB7 GLY B 265 GLN B 269 5 5 HELIX 17 AB8 HIS B 321 TYR B 325 5 5 SHEET 1 AA1 5 THR A 25 VAL A 26 0 SHEET 2 AA1 5 TRP A 286 THR A 294 1 O LEU A 292 N THR A 25 SHEET 3 AA1 5 GLY A 271 ALA A 278 -1 N VAL A 277 O GLU A 287 SHEET 4 AA1 5 LEU A 231 ASN A 238 -1 N PHE A 235 O GLY A 274 SHEET 5 AA1 5 ARG A 218 ILE A 224 -1 N ARG A 218 O GLU A 236 SHEET 1 AA2 4 VAL A 58 PRO A 65 0 SHEET 2 AA2 4 TRP A 79 ASP A 88 -1 O LEU A 83 N MET A 64 SHEET 3 AA2 4 ARG A 117 SER A 123 -1 O SER A 123 N SER A 80 SHEET 4 AA2 4 ILE A 130 ARG A 134 -1 O GLY A 132 N TYR A 120 SHEET 1 AA3 4 VAL A 58 PRO A 65 0 SHEET 2 AA3 4 TRP A 79 ASP A 88 -1 O LEU A 83 N MET A 64 SHEET 3 AA3 4 VAL A 74 VAL A 76 -1 N VAL A 76 O TRP A 79 SHEET 4 AA3 4 LYS A 426 VAL A 428 1 O VAL A 428 N SER A 75 SHEET 1 AA4 4 ARG A 145 LEU A 153 0 SHEET 2 AA4 4 ASP A 159 VAL A 167 -1 O THR A 165 N TRP A 147 SHEET 3 AA4 4 ALA A 171 SER A 183 -1 O VAL A 176 N LEU A 162 SHEET 4 AA4 4 GLY A 186 LYS A 190 -1 O GLU A 188 N VAL A 181 SHEET 1 AA5 4 ARG A 145 LEU A 153 0 SHEET 2 AA5 4 ASP A 159 VAL A 167 -1 O THR A 165 N TRP A 147 SHEET 3 AA5 4 ALA A 171 SER A 183 -1 O VAL A 176 N LEU A 162 SHEET 4 AA5 4 VAL A 195 GLU A 200 -1 O LEU A 198 N ILE A 173 SHEET 1 AA6 4 GLU A 303 GLN A 310 0 SHEET 2 AA6 4 LYS A 313 SER A 320 -1 O ILE A 319 N GLU A 303 SHEET 3 AA6 4 GLY A 334 GLY A 340 -1 O PHE A 338 N LEU A 316 SHEET 4 AA6 4 ARG A 348 PRO A 349 -1 O ARG A 348 N VAL A 339 SHEET 1 AA7 4 GLU A 303 GLN A 310 0 SHEET 2 AA7 4 LYS A 313 SER A 320 -1 O ILE A 319 N GLU A 303 SHEET 3 AA7 4 GLY A 334 GLY A 340 -1 O PHE A 338 N LEU A 316 SHEET 4 AA7 4 LEU A 355 GLY A 358 -1 O VAL A 356 N VAL A 335 SHEET 1 AA8 3 THR A 367 VAL A 372 0 SHEET 2 AA8 3 LEU A 377 THR A 387 -1 O THR A 379 N CYS A 371 SHEET 3 AA8 3 ASP A 391 GLU A 398 -1 O THR A 397 N ILE A 382 SHEET 1 AA9 4 THR A 367 VAL A 372 0 SHEET 2 AA9 4 LEU A 377 THR A 387 -1 O THR A 379 N CYS A 371 SHEET 3 AA9 4 PRO A 400 LYS A 407 -1 O VAL A 402 N VAL A 378 SHEET 4 AA9 4 ARG A 410 TYR A 419 -1 O TYR A 417 N THR A 401 SHEET 1 AB1 5 THR B 25 VAL B 26 0 SHEET 2 AB1 5 TRP B 286 THR B 294 1 O LEU B 292 N THR B 25 SHEET 3 AB1 5 GLY B 271 ALA B 278 -1 N VAL B 277 O GLU B 287 SHEET 4 AB1 5 LEU B 231 ASN B 238 -1 N PHE B 235 O GLY B 274 SHEET 5 AB1 5 ARG B 218 ILE B 224 -1 N ARG B 218 O GLU B 236 SHEET 1 AB2 4 VAL B 58 PRO B 65 0 SHEET 2 AB2 4 SER B 80 ASP B 88 -1 O LEU B 83 N MET B 64 SHEET 3 AB2 4 ARG B 117 SER B 123 -1 O SER B 123 N SER B 80 SHEET 4 AB2 4 ILE B 130 ARG B 134 -1 O GLY B 132 N TYR B 120 SHEET 1 AB3 2 VAL B 74 VAL B 76 0 SHEET 2 AB3 2 LYS B 426 VAL B 428 1 O VAL B 428 N SER B 75 SHEET 1 AB4 4 ARG B 145 LEU B 153 0 SHEET 2 AB4 4 ASP B 159 VAL B 167 -1 O ASP B 161 N ILE B 152 SHEET 3 AB4 4 ALA B 171 SER B 183 -1 O ALA B 174 N TYR B 164 SHEET 4 AB4 4 GLY B 186 LYS B 190 -1 O GLU B 188 N VAL B 181 SHEET 1 AB5 4 ARG B 145 LEU B 153 0 SHEET 2 AB5 4 ASP B 159 VAL B 167 -1 O ASP B 161 N ILE B 152 SHEET 3 AB5 4 ALA B 171 SER B 183 -1 O ALA B 174 N TYR B 164 SHEET 4 AB5 4 VAL B 195 GLU B 200 -1 O LYS B 196 N LYS B 175 SHEET 1 AB6 4 GLU B 303 GLN B 310 0 SHEET 2 AB6 4 LYS B 313 SER B 320 -1 O PHE B 317 N HIS B 306 SHEET 3 AB6 4 GLY B 334 GLY B 340 -1 O PHE B 338 N LEU B 316 SHEET 4 AB6 4 ARG B 348 PRO B 349 -1 O ARG B 348 N VAL B 339 SHEET 1 AB7 4 GLU B 303 GLN B 310 0 SHEET 2 AB7 4 LYS B 313 SER B 320 -1 O PHE B 317 N HIS B 306 SHEET 3 AB7 4 GLY B 334 GLY B 340 -1 O PHE B 338 N LEU B 316 SHEET 4 AB7 4 LEU B 355 GLY B 358 -1 O LEU B 357 N VAL B 335 SHEET 1 AB8 3 THR B 367 VAL B 372 0 SHEET 2 AB8 3 LEU B 377 THR B 387 -1 O THR B 379 N CYS B 371 SHEET 3 AB8 3 ASP B 391 GLU B 398 -1 O THR B 397 N ILE B 382 SHEET 1 AB9 4 THR B 367 VAL B 372 0 SHEET 2 AB9 4 LEU B 377 THR B 387 -1 O THR B 379 N CYS B 371 SHEET 3 AB9 4 PRO B 400 LYS B 407 -1 O VAL B 402 N VAL B 378 SHEET 4 AB9 4 ARG B 410 TYR B 419 -1 O TYR B 417 N THR B 401 CISPEP 1 THR A 168 PRO A 169 0 -3.07 CISPEP 2 GLY A 345 PRO A 346 0 2.61 CISPEP 3 THR B 168 PRO B 169 0 -2.86 CISPEP 4 GLY B 345 PRO B 346 0 3.34 CRYST1 57.610 100.630 77.930 90.00 96.06 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017358 0.000000 0.001842 0.00000 SCALE2 0.000000 0.009937 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012904 0.00000