HEADER LYASE 14-SEP-23 8QK4 TITLE DEHYDRATASE DOMAIN (PKSJ DH1) FROM THE BACILLAENE TRANS-AT PKS COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYKETIDE SYNTHASE PKSJ; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PKS; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 GENE: PKSJ, PKSK, BSU17180; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDRATASE DOMAIN, TRANS-AT POLYKETIDE SYNTHASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR F.PANG,L.M.ALKHALAF,M.JENNER REVDAT 1 25-SEP-24 8QK4 0 JRNL AUTH F.PANG,L.M.ALKHALAF,M.JENNER JRNL TITL DEHYDRATASE DOMAIN (PKSJ DH1) FROM THE BACILLAENE TRANS-AT JRNL TITL 2 PKS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 2247 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3317 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4315 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.91600 REMARK 3 B22 (A**2) : -1.62500 REMARK 3 B33 (A**2) : -0.29100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.916 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4500 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4213 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6106 ; 1.361 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9709 ; 0.468 ; 1.569 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 584 ; 7.021 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 22 ; 6.368 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 733 ;13.721 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 704 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5297 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 991 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 716 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 102 ; 0.255 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2133 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 213 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2306 ; 3.236 ; 3.254 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2306 ; 3.237 ; 3.254 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2882 ; 4.881 ; 5.819 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2883 ; 4.880 ; 5.819 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2194 ; 4.110 ; 3.663 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2195 ; 4.109 ; 3.664 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3218 ; 6.542 ; 6.490 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3219 ; 6.541 ; 6.490 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8QK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292129823. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47606 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.104 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350 AND 0.3 M SODIUM FORMATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.45250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.96900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.39500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.96900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.45250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.39500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 MET A 3 REMARK 465 THR A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 GLN A 7 REMARK 465 GLN A 8 REMARK 465 MET A 9 REMARK 465 GLY A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 VAL A 14 REMARK 465 ALA A 15 REMARK 465 GLN A 16 REMARK 465 ASP A 275 REMARK 465 SER A 276 REMARK 465 ASP A 277 REMARK 465 HIS A 278 REMARK 465 SER A 279 REMARK 465 GLY A 280 REMARK 465 GLY A 281 REMARK 465 VAL A 282 REMARK 465 SER A 316 REMARK 465 LYS A 317 REMARK 465 PRO A 318 REMARK 465 SER A 319 REMARK 465 THR A 320 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 SER B 2 REMARK 465 MET B 3 REMARK 465 THR B 4 REMARK 465 GLY B 5 REMARK 465 GLY B 6 REMARK 465 GLN B 7 REMARK 465 GLN B 8 REMARK 465 MET B 9 REMARK 465 GLY B 10 REMARK 465 ARG B 11 REMARK 465 GLY B 12 REMARK 465 SER B 13 REMARK 465 VAL B 14 REMARK 465 ALA B 15 REMARK 465 GLN B 16 REMARK 465 ILE B 17 REMARK 465 SER B 18 REMARK 465 GLY B 19 REMARK 465 ASN B 20 REMARK 465 GLN B 21 REMARK 465 THR B 22 REMARK 465 GLU B 133 REMARK 465 ASP B 134 REMARK 465 GLY B 135 REMARK 465 ASP B 136 REMARK 465 ASP B 275 REMARK 465 SER B 276 REMARK 465 ASP B 277 REMARK 465 HIS B 278 REMARK 465 SER B 279 REMARK 465 GLY B 280 REMARK 465 GLY B 281 REMARK 465 VAL B 282 REMARK 465 GLY B 311 REMARK 465 GLU B 312 REMARK 465 VAL B 313 REMARK 465 HIS B 314 REMARK 465 THR B 315 REMARK 465 SER B 316 REMARK 465 LYS B 317 REMARK 465 PRO B 318 REMARK 465 SER B 319 REMARK 465 THR B 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 107 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 LYS A 170 CD CE NZ REMARK 470 ASP A 245 CG OD1 OD2 REMARK 470 GLN A 246 CG CD OE1 NE2 REMARK 470 ARG A 307 CG CD NE CZ NH1 NH2 REMARK 470 THR A 315 OG1 CG2 REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 GLN B 132 CG CD OE1 NE2 REMARK 470 GLU B 153 CG CD OE1 OE2 REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 ARG B 183 CZ NH1 NH2 REMARK 470 GLU B 219 CG CD OE1 OE2 REMARK 470 ARG B 272 NE CZ NH1 NH2 REMARK 470 VAL B 283 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 95 -148.11 -101.85 REMARK 500 ALA A 151 -119.65 -27.27 REMARK 500 ALA A 151 -133.49 -97.31 REMARK 500 ALA A 152 97.26 87.02 REMARK 500 ALA A 152 -65.41 74.61 REMARK 500 GLU A 153 107.89 84.38 REMARK 500 CYS A 166 55.07 -99.67 REMARK 500 LEU B 31 84.04 -155.53 REMARK 500 GLN B 88 -69.65 69.62 REMARK 500 ASN B 95 -152.94 -97.84 REMARK 500 ASP B 106 -78.27 -111.42 REMARK 500 VAL B 222 -61.75 -90.20 REMARK 500 GLN B 246 68.90 -119.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 236 OG1 REMARK 620 2 GOL A 405 O1 98.8 REMARK 620 3 HOH A 586 O 133.3 127.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GOL A 405 O2 REMARK 620 2 GOL A 405 O3 56.2 REMARK 620 3 GOL A 406 O3 177.9 121.7 REMARK 620 N 1 2 DBREF 8QK4 A 14 320 UNP P40806 PKSJ_BACSU 2360 2666 DBREF 8QK4 B 14 320 UNP P40806 PKSJ_BACSU 2360 2666 SEQADV 8QK4 MET A -20 UNP P40806 INITIATING METHIONINE SEQADV 8QK4 GLY A -19 UNP P40806 EXPRESSION TAG SEQADV 8QK4 SER A -18 UNP P40806 EXPRESSION TAG SEQADV 8QK4 SER A -17 UNP P40806 EXPRESSION TAG SEQADV 8QK4 HIS A -16 UNP P40806 EXPRESSION TAG SEQADV 8QK4 HIS A -15 UNP P40806 EXPRESSION TAG SEQADV 8QK4 HIS A -14 UNP P40806 EXPRESSION TAG SEQADV 8QK4 HIS A -13 UNP P40806 EXPRESSION TAG SEQADV 8QK4 HIS A -12 UNP P40806 EXPRESSION TAG SEQADV 8QK4 HIS A -11 UNP P40806 EXPRESSION TAG SEQADV 8QK4 SER A -10 UNP P40806 EXPRESSION TAG SEQADV 8QK4 SER A -9 UNP P40806 EXPRESSION TAG SEQADV 8QK4 GLY A -8 UNP P40806 EXPRESSION TAG SEQADV 8QK4 LEU A -7 UNP P40806 EXPRESSION TAG SEQADV 8QK4 VAL A -6 UNP P40806 EXPRESSION TAG SEQADV 8QK4 PRO A -5 UNP P40806 EXPRESSION TAG SEQADV 8QK4 ARG A -4 UNP P40806 EXPRESSION TAG SEQADV 8QK4 GLY A -3 UNP P40806 EXPRESSION TAG SEQADV 8QK4 SER A -2 UNP P40806 EXPRESSION TAG SEQADV 8QK4 HIS A -1 UNP P40806 EXPRESSION TAG SEQADV 8QK4 MET A 0 UNP P40806 EXPRESSION TAG SEQADV 8QK4 ALA A 1 UNP P40806 EXPRESSION TAG SEQADV 8QK4 SER A 2 UNP P40806 EXPRESSION TAG SEQADV 8QK4 MET A 3 UNP P40806 EXPRESSION TAG SEQADV 8QK4 THR A 4 UNP P40806 EXPRESSION TAG SEQADV 8QK4 GLY A 5 UNP P40806 EXPRESSION TAG SEQADV 8QK4 GLY A 6 UNP P40806 EXPRESSION TAG SEQADV 8QK4 GLN A 7 UNP P40806 EXPRESSION TAG SEQADV 8QK4 GLN A 8 UNP P40806 EXPRESSION TAG SEQADV 8QK4 MET A 9 UNP P40806 EXPRESSION TAG SEQADV 8QK4 GLY A 10 UNP P40806 EXPRESSION TAG SEQADV 8QK4 ARG A 11 UNP P40806 EXPRESSION TAG SEQADV 8QK4 GLY A 12 UNP P40806 EXPRESSION TAG SEQADV 8QK4 SER A 13 UNP P40806 EXPRESSION TAG SEQADV 8QK4 MET B -20 UNP P40806 INITIATING METHIONINE SEQADV 8QK4 GLY B -19 UNP P40806 EXPRESSION TAG SEQADV 8QK4 SER B -18 UNP P40806 EXPRESSION TAG SEQADV 8QK4 SER B -17 UNP P40806 EXPRESSION TAG SEQADV 8QK4 HIS B -16 UNP P40806 EXPRESSION TAG SEQADV 8QK4 HIS B -15 UNP P40806 EXPRESSION TAG SEQADV 8QK4 HIS B -14 UNP P40806 EXPRESSION TAG SEQADV 8QK4 HIS B -13 UNP P40806 EXPRESSION TAG SEQADV 8QK4 HIS B -12 UNP P40806 EXPRESSION TAG SEQADV 8QK4 HIS B -11 UNP P40806 EXPRESSION TAG SEQADV 8QK4 SER B -10 UNP P40806 EXPRESSION TAG SEQADV 8QK4 SER B -9 UNP P40806 EXPRESSION TAG SEQADV 8QK4 GLY B -8 UNP P40806 EXPRESSION TAG SEQADV 8QK4 LEU B -7 UNP P40806 EXPRESSION TAG SEQADV 8QK4 VAL B -6 UNP P40806 EXPRESSION TAG SEQADV 8QK4 PRO B -5 UNP P40806 EXPRESSION TAG SEQADV 8QK4 ARG B -4 UNP P40806 EXPRESSION TAG SEQADV 8QK4 GLY B -3 UNP P40806 EXPRESSION TAG SEQADV 8QK4 SER B -2 UNP P40806 EXPRESSION TAG SEQADV 8QK4 HIS B -1 UNP P40806 EXPRESSION TAG SEQADV 8QK4 MET B 0 UNP P40806 EXPRESSION TAG SEQADV 8QK4 ALA B 1 UNP P40806 EXPRESSION TAG SEQADV 8QK4 SER B 2 UNP P40806 EXPRESSION TAG SEQADV 8QK4 MET B 3 UNP P40806 EXPRESSION TAG SEQADV 8QK4 THR B 4 UNP P40806 EXPRESSION TAG SEQADV 8QK4 GLY B 5 UNP P40806 EXPRESSION TAG SEQADV 8QK4 GLY B 6 UNP P40806 EXPRESSION TAG SEQADV 8QK4 GLN B 7 UNP P40806 EXPRESSION TAG SEQADV 8QK4 GLN B 8 UNP P40806 EXPRESSION TAG SEQADV 8QK4 MET B 9 UNP P40806 EXPRESSION TAG SEQADV 8QK4 GLY B 10 UNP P40806 EXPRESSION TAG SEQADV 8QK4 ARG B 11 UNP P40806 EXPRESSION TAG SEQADV 8QK4 GLY B 12 UNP P40806 EXPRESSION TAG SEQADV 8QK4 SER B 13 UNP P40806 EXPRESSION TAG SEQRES 1 A 341 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 341 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 341 GLY GLN GLN MET GLY ARG GLY SER VAL ALA GLN ILE SER SEQRES 4 A 341 GLY ASN GLN THR GLY ILE GLY SER ILE HIS PRO LEU LEU SEQRES 5 A 341 HIS GLN ASN THR SER ASP PHE SER GLU GLN LYS PHE SER SEQRES 6 A 341 SER VAL PHE THR GLY ASP GLU PHE PHE LEU ARG ASP HIS SEQRES 7 A 341 VAL VAL ARG GLY LYS PRO VAL LEU PRO GLY VAL ALA TYR SEQRES 8 A 341 LEU GLU MET ALA TYR ALA ALA ILE ASN GLN ALA ALA GLY SEQRES 9 A 341 SER GLU ILE GLY GLN ASP VAL ARG ILE ARG LEU ASN HIS SEQRES 10 A 341 THR VAL TRP VAL GLN PRO VAL VAL VAL ASP ARG HIS SER SEQRES 11 A 341 ALA GLN VAL ASP ILE SER LEU PHE PRO GLU GLU ASP GLY SEQRES 12 A 341 LYS ILE THR PHE ASP ILE TYR SER THR GLN GLU ASP GLY SEQRES 13 A 341 ASP ASP PRO VAL ILE HIS SER GLN GLY SER ALA GLU LEU SEQRES 14 A 341 ALA SER ALA ALA GLU THR PRO VAL ALA ASP LEU THR GLU SEQRES 15 A 341 MET SER ARG ARG CYS GLY LYS GLY LYS MET SER PRO ASP SEQRES 16 A 341 GLN PHE TYR GLU GLU GLY ARG SER ARG GLY MET PHE HIS SEQRES 17 A 341 GLY PRO ALA PHE GLN GLY ILE LYS ASN VAL ASN ILE GLY SEQRES 18 A 341 ASN ARG GLU VAL LEU ALA GLN LEU GLN LEU PRO GLU ILE SEQRES 19 A 341 VAL SER GLY THR ASN GLU GLN PHE VAL LEU HIS PRO SER SEQRES 20 A 341 ILE MET ASP SER ALA LEU GLN THR ALA THR ILE CYS ILE SEQRES 21 A 341 MET GLN GLU LEU THR ASP GLN LYS LEU ILE LEU PRO PHE SEQRES 22 A 341 ALA LEU GLU GLU LEU GLU VAL ILE LYS GLY CYS SER SER SEQRES 23 A 341 SER MET TRP ALA TYR ALA ARG LEU SER ASP SER ASP HIS SEQRES 24 A 341 SER GLY GLY VAL VAL GLN LYS ALA ASP ILE ASP VAL ILE SEQRES 25 A 341 ASP GLU SER GLY THR VAL CYS VAL ARG ILE LYS GLY PHE SEQRES 26 A 341 SER THR ARG VAL LEU GLU GLY GLU VAL HIS THR SER LYS SEQRES 27 A 341 PRO SER THR SEQRES 1 B 341 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 341 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 B 341 GLY GLN GLN MET GLY ARG GLY SER VAL ALA GLN ILE SER SEQRES 4 B 341 GLY ASN GLN THR GLY ILE GLY SER ILE HIS PRO LEU LEU SEQRES 5 B 341 HIS GLN ASN THR SER ASP PHE SER GLU GLN LYS PHE SER SEQRES 6 B 341 SER VAL PHE THR GLY ASP GLU PHE PHE LEU ARG ASP HIS SEQRES 7 B 341 VAL VAL ARG GLY LYS PRO VAL LEU PRO GLY VAL ALA TYR SEQRES 8 B 341 LEU GLU MET ALA TYR ALA ALA ILE ASN GLN ALA ALA GLY SEQRES 9 B 341 SER GLU ILE GLY GLN ASP VAL ARG ILE ARG LEU ASN HIS SEQRES 10 B 341 THR VAL TRP VAL GLN PRO VAL VAL VAL ASP ARG HIS SER SEQRES 11 B 341 ALA GLN VAL ASP ILE SER LEU PHE PRO GLU GLU ASP GLY SEQRES 12 B 341 LYS ILE THR PHE ASP ILE TYR SER THR GLN GLU ASP GLY SEQRES 13 B 341 ASP ASP PRO VAL ILE HIS SER GLN GLY SER ALA GLU LEU SEQRES 14 B 341 ALA SER ALA ALA GLU THR PRO VAL ALA ASP LEU THR GLU SEQRES 15 B 341 MET SER ARG ARG CYS GLY LYS GLY LYS MET SER PRO ASP SEQRES 16 B 341 GLN PHE TYR GLU GLU GLY ARG SER ARG GLY MET PHE HIS SEQRES 17 B 341 GLY PRO ALA PHE GLN GLY ILE LYS ASN VAL ASN ILE GLY SEQRES 18 B 341 ASN ARG GLU VAL LEU ALA GLN LEU GLN LEU PRO GLU ILE SEQRES 19 B 341 VAL SER GLY THR ASN GLU GLN PHE VAL LEU HIS PRO SER SEQRES 20 B 341 ILE MET ASP SER ALA LEU GLN THR ALA THR ILE CYS ILE SEQRES 21 B 341 MET GLN GLU LEU THR ASP GLN LYS LEU ILE LEU PRO PHE SEQRES 22 B 341 ALA LEU GLU GLU LEU GLU VAL ILE LYS GLY CYS SER SER SEQRES 23 B 341 SER MET TRP ALA TYR ALA ARG LEU SER ASP SER ASP HIS SEQRES 24 B 341 SER GLY GLY VAL VAL GLN LYS ALA ASP ILE ASP VAL ILE SEQRES 25 B 341 ASP GLU SER GLY THR VAL CYS VAL ARG ILE LYS GLY PHE SEQRES 26 B 341 SER THR ARG VAL LEU GLU GLY GLU VAL HIS THR SER LYS SEQRES 27 B 341 PRO SER THR HET GOL A 401 6 HET GOL A 402 6 HET NA A 403 1 HET NA A 404 1 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET CL A 408 1 HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 5(C3 H8 O3) FORMUL 5 NA 2(NA 1+) FORMUL 10 CL CL 1- FORMUL 11 HOH *190(H2 O) HELIX 1 AA1 GLU A 51 ASP A 56 1 6 HELIX 2 AA2 PRO A 66 GLY A 83 1 18 HELIX 3 AA3 SER A 84 ILE A 86 5 3 HELIX 4 AA4 ASP A 158 CYS A 166 1 9 HELIX 5 AA5 SER A 172 GLY A 184 1 13 HELIX 6 AA6 PRO A 189 GLN A 192 5 4 HELIX 7 AA7 PRO A 211 ASN A 218 5 8 HELIX 8 AA8 HIS A 224 GLN A 241 1 18 HELIX 9 AA9 GLU B 51 ASP B 56 1 6 HELIX 10 AB1 PRO B 66 ALA B 82 1 17 HELIX 11 AB2 GLY B 83 ILE B 86 5 4 HELIX 12 AB3 ASP B 158 CYS B 166 1 9 HELIX 13 AB4 SER B 172 ARG B 183 1 12 HELIX 14 AB5 PRO B 189 GLN B 192 5 4 HELIX 15 AB6 PRO B 211 SER B 215 5 5 HELIX 16 AB7 GLY B 216 PHE B 221 5 6 HELIX 17 AB8 HIS B 224 GLN B 241 1 18 SHEET 1 AA113 GLN A 33 ASN A 34 0 SHEET 2 AA113 GLN A 41 PHE A 47 -1 O SER A 44 N GLN A 33 SHEET 3 AA113 ALA A 110 PRO A 118 -1 O ALA A 110 N PHE A 47 SHEET 4 AA113 ILE A 124 SER A 130 -1 O TYR A 129 N ASP A 113 SHEET 5 AA113 VAL A 139 SER A 150 -1 O VAL A 139 N SER A 130 SHEET 6 AA113 VAL A 90 LEU A 94 -1 N ARG A 91 O ALA A 149 SHEET 7 AA113 GLU A 256 VAL A 259 -1 O LEU A 257 N LEU A 94 SHEET 8 AA113 VAL A 297 VAL A 308 -1 O ARG A 300 N GLU A 258 SHEET 9 AA113 ALA A 286 ASP A 292 -1 N ILE A 288 O ILE A 301 SHEET 10 AA113 SER A 266 LEU A 273 -1 N TYR A 270 O ASP A 289 SHEET 11 AA113 GLU A 203 GLN A 209 -1 N ALA A 206 O ALA A 269 SHEET 12 AA113 ILE A 194 ILE A 199 -1 N LYS A 195 O GLN A 207 SHEET 13 AA113 GLY A 169 MET A 171 -1 N GLY A 169 O ILE A 199 SHEET 1 AA213 GLN A 33 ASN A 34 0 SHEET 2 AA213 GLN A 41 PHE A 47 -1 O SER A 44 N GLN A 33 SHEET 3 AA213 ALA A 110 PRO A 118 -1 O ALA A 110 N PHE A 47 SHEET 4 AA213 ILE A 124 SER A 130 -1 O TYR A 129 N ASP A 113 SHEET 5 AA213 VAL A 139 SER A 150 -1 O VAL A 139 N SER A 130 SHEET 6 AA213 THR A 97 TRP A 99 -1 N VAL A 98 O GLN A 143 SHEET 7 AA213 ILE A 249 LEU A 254 -1 O LEU A 254 N THR A 97 SHEET 8 AA213 VAL A 297 VAL A 308 -1 O SER A 305 N PHE A 252 SHEET 9 AA213 ALA A 286 ASP A 292 -1 N ILE A 288 O ILE A 301 SHEET 10 AA213 SER A 266 LEU A 273 -1 N TYR A 270 O ASP A 289 SHEET 11 AA213 GLU A 203 GLN A 209 -1 N ALA A 206 O ALA A 269 SHEET 12 AA213 ILE A 194 ILE A 199 -1 N LYS A 195 O GLN A 207 SHEET 13 AA213 GLY A 169 MET A 171 -1 N GLY A 169 O ILE A 199 SHEET 1 AA3 3 LYS A 62 PRO A 63 0 SHEET 2 AA3 3 HIS A 57 VAL A 59 -1 N VAL A 59 O LYS A 62 SHEET 3 AA3 3 MET A 185 HIS A 187 -1 O PHE A 186 N VAL A 58 SHEET 1 AA413 GLN B 33 ASN B 34 0 SHEET 2 AA413 GLN B 41 PHE B 47 -1 O SER B 44 N GLN B 33 SHEET 3 AA413 ALA B 110 PRO B 118 -1 O ALA B 110 N PHE B 47 SHEET 4 AA413 LYS B 123 SER B 130 -1 O TYR B 129 N ASP B 113 SHEET 5 AA413 VAL B 139 SER B 150 -1 O HIS B 141 N ILE B 128 SHEET 6 AA413 VAL B 90 TRP B 99 -1 N ARG B 91 O ALA B 149 SHEET 7 AA413 ILE B 249 LEU B 254 -1 O PHE B 252 N TRP B 99 SHEET 8 AA413 VAL B 297 VAL B 308 -1 O SER B 305 N ALA B 253 SHEET 9 AA413 ALA B 286 ASP B 292 -1 N ILE B 288 O ILE B 301 SHEET 10 AA413 SER B 266 LEU B 273 -1 N TRP B 268 O ILE B 291 SHEET 11 AA413 GLU B 203 GLN B 209 -1 N LEU B 208 O MET B 267 SHEET 12 AA413 ILE B 194 ILE B 199 -1 N LYS B 195 O GLN B 207 SHEET 13 AA413 GLY B 169 MET B 171 -1 N GLY B 169 O ILE B 199 SHEET 1 AA513 GLN B 33 ASN B 34 0 SHEET 2 AA513 GLN B 41 PHE B 47 -1 O SER B 44 N GLN B 33 SHEET 3 AA513 ALA B 110 PRO B 118 -1 O ALA B 110 N PHE B 47 SHEET 4 AA513 LYS B 123 SER B 130 -1 O TYR B 129 N ASP B 113 SHEET 5 AA513 VAL B 139 SER B 150 -1 O HIS B 141 N ILE B 128 SHEET 6 AA513 VAL B 90 TRP B 99 -1 N ARG B 91 O ALA B 149 SHEET 7 AA513 GLU B 256 VAL B 259 -1 O LEU B 257 N LEU B 94 SHEET 8 AA513 VAL B 297 VAL B 308 -1 O ARG B 300 N GLU B 258 SHEET 9 AA513 ALA B 286 ASP B 292 -1 N ILE B 288 O ILE B 301 SHEET 10 AA513 SER B 266 LEU B 273 -1 N TRP B 268 O ILE B 291 SHEET 11 AA513 GLU B 203 GLN B 209 -1 N LEU B 208 O MET B 267 SHEET 12 AA513 ILE B 194 ILE B 199 -1 N LYS B 195 O GLN B 207 SHEET 13 AA513 GLY B 169 MET B 171 -1 N GLY B 169 O ILE B 199 SHEET 1 AA6 3 LYS B 62 PRO B 63 0 SHEET 2 AA6 3 HIS B 57 VAL B 59 -1 N VAL B 59 O LYS B 62 SHEET 3 AA6 3 MET B 185 HIS B 187 -1 O PHE B 186 N VAL B 58 LINK OG1 THR A 236 NA NA A 404 1555 1555 2.95 LINK NA NA A 403 O2 GOL A 405 1555 1555 3.14 LINK NA NA A 403 O3 GOL A 405 1555 1555 2.44 LINK NA NA A 403 O3 GOL A 406 1555 1555 2.63 LINK NA NA A 404 O1 GOL A 405 1555 1555 2.45 LINK NA NA A 404 O HOH A 586 1555 1555 2.68 CRYST1 52.905 84.790 131.938 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018902 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011794 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007579 0.00000