HEADER HYDROLASE 19-SEP-23 8QLD TITLE BACTERIOPHAGE T5 DUTPASE MUTANT WITH LOOP DELETION (30-35 AA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE T5; SOURCE 3 ORGANISM_TAXID: 2695836; SOURCE 4 GENE: DUT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIOPHAGE, T5, DUTPASE, DEOXYURIDINE TRIPHOSPHATE KEYWDS 2 NUCLEOTIDOHYDROLASES, DUTP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.G.GABDULKHAKOV,U.F.DZHUS,G.K.SELIKHANOV,A.S.GLUKHOV REVDAT 2 31-JAN-24 8QLD 1 JRNL REVDAT 1 17-JAN-24 8QLD 0 JRNL AUTH A.GLUKHOV,V.MARCHENKOV,U.DZHUS,A.KRUTILINA,G.SELIKHANOV, JRNL AUTH 2 A.GABDULKHAKOV JRNL TITL BACTERIOPHAGE T5 DUTPASE: COMBINATION OF COMMON ENZYMATIC JRNL TITL 2 AND NOVEL FUNCTIONS. JRNL REF INT J MOL SCI V. 25 2024 JRNL REFN ESSN 1422-0067 JRNL PMID 38255966 JRNL DOI 10.3390/IJMS25020892 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 24792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.679 REMARK 3 FREE R VALUE TEST SET COUNT : 1160 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1746 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3045 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23200 REMARK 3 B22 (A**2) : -0.23200 REMARK 3 B33 (A**2) : 0.75400 REMARK 3 B12 (A**2) : -0.11600 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.266 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.580 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3151 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3040 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4250 ; 1.342 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7008 ; 0.461 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 387 ; 6.694 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 21 ; 6.668 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 564 ;17.020 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 480 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3617 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 689 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 547 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 49 ; 0.221 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1508 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 192 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1554 ; 1.210 ; 1.598 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1554 ; 1.210 ; 1.598 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1939 ; 1.938 ; 2.850 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1940 ; 1.938 ; 2.853 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1597 ; 1.720 ; 1.859 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1582 ; 1.561 ; 1.831 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2311 ; 2.656 ; 3.323 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2288 ; 2.466 ; 3.274 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): 38.5499 -2.8021 8.0839 REMARK 3 T TENSOR REMARK 3 T11: 0.1983 T22: 0.0975 REMARK 3 T33: 0.0135 T12: -0.0131 REMARK 3 T13: -0.0318 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.6776 L22: 2.2502 REMARK 3 L33: 1.8275 L12: -0.1234 REMARK 3 L13: 0.0939 L23: -0.1947 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: -0.2029 S13: 0.0399 REMARK 3 S21: 0.2006 S22: -0.1187 S23: 0.0126 REMARK 3 S31: -0.2490 S32: -0.0761 S33: 0.1315 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 49.8884 -9.3897 -6.0148 REMARK 3 T TENSOR REMARK 3 T11: 0.1708 T22: 0.0587 REMARK 3 T33: 0.0739 T12: 0.0129 REMARK 3 T13: 0.0394 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 1.0181 L22: 2.7644 REMARK 3 L33: 1.4729 L12: -0.0873 REMARK 3 L13: 0.2545 L23: 0.0172 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: 0.0819 S13: -0.0573 REMARK 3 S21: -0.2703 S22: -0.1067 S23: -0.3966 REMARK 3 S31: -0.0336 S32: 0.2561 S33: 0.1069 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 31.7475 -12.6025 -6.5205 REMARK 3 T TENSOR REMARK 3 T11: 0.2163 T22: 0.1266 REMARK 3 T33: 0.0466 T12: -0.0415 REMARK 3 T13: -0.0468 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.9931 L22: 2.0810 REMARK 3 L33: 1.7931 L12: 0.8423 REMARK 3 L13: -0.1021 L23: -0.4902 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: -0.0589 S13: -0.0173 REMARK 3 S21: -0.4415 S22: -0.0778 S23: 0.1389 REMARK 3 S31: 0.0937 S32: -0.3241 S33: 0.1342 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8QLD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292133434. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-23 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU PHOTONJET-S REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26147 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 23.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.085 M HEPES SODIUM, 1.7% V/V REMARK 280 POLYETHYLENE GLYCOL 400, 1.7 M AMMONIUM SULFATE, 15% V/V REMARK 280 GLYCEROL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.66600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.33300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.99950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.66650 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.33250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 129 REMARK 465 THR A 130 REMARK 465 ILE A 131 REMARK 465 ARG A 132 REMARK 465 GLY A 133 REMARK 465 GLU A 134 REMARK 465 GLY A 135 REMARK 465 GLY A 136 REMARK 465 PHE A 137 REMARK 465 GLY A 138 REMARK 465 SER A 139 REMARK 465 SER A 140 REMARK 465 GLY A 141 REMARK 465 SER A 142 REMARK 465 LYS A 143 REMARK 465 THR B 130 REMARK 465 ILE B 131 REMARK 465 ARG B 132 REMARK 465 GLY B 133 REMARK 465 GLU B 134 REMARK 465 GLY B 135 REMARK 465 GLY B 136 REMARK 465 PHE B 137 REMARK 465 GLY B 138 REMARK 465 SER B 139 REMARK 465 SER B 140 REMARK 465 GLY B 141 REMARK 465 SER B 142 REMARK 465 LYS B 143 REMARK 465 ARG C 132 REMARK 465 GLY C 133 REMARK 465 GLU C 134 REMARK 465 GLY C 135 REMARK 465 GLY C 136 REMARK 465 PHE C 137 REMARK 465 GLY C 138 REMARK 465 SER C 139 REMARK 465 SER C 140 REMARK 465 GLY C 141 REMARK 465 SER C 142 REMARK 465 LYS C 143 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 -106.11 -120.79 REMARK 500 THR A 75 -54.98 74.79 REMARK 500 THR B 75 -60.43 73.43 REMARK 500 ASN B 120 69.09 -101.14 REMARK 500 THR C 75 -55.94 81.46 REMARK 500 LEU C 107 -51.00 -122.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 68 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 349 DISTANCE = 5.83 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8QKY RELATED DB: PDB REMARK 900 SAME PROTEIN WITH LOOP DELETION DBREF 8QLD A 1 143 UNP O48500 DUT_BPT5 1 148 DBREF 8QLD B 1 143 UNP O48500 DUT_BPT5 1 148 DBREF 8QLD C 1 143 UNP O48500 DUT_BPT5 1 148 SEQADV 8QLD ASN A 30 UNP O48500 GLY 30 CONFLICT SEQADV 8QLD A UNP O48500 THR 31 DELETION SEQADV 8QLD A UNP O48500 ASN 32 DELETION SEQADV 8QLD A UNP O48500 PRO 33 DELETION SEQADV 8QLD A UNP O48500 ALA 34 DELETION SEQADV 8QLD A UNP O48500 ALA 35 DELETION SEQADV 8QLD ASN B 30 UNP O48500 GLY 30 CONFLICT SEQADV 8QLD B UNP O48500 THR 31 DELETION SEQADV 8QLD B UNP O48500 ASN 32 DELETION SEQADV 8QLD B UNP O48500 PRO 33 DELETION SEQADV 8QLD B UNP O48500 ALA 34 DELETION SEQADV 8QLD B UNP O48500 ALA 35 DELETION SEQADV 8QLD ASN C 30 UNP O48500 GLY 30 CONFLICT SEQADV 8QLD C UNP O48500 THR 31 DELETION SEQADV 8QLD C UNP O48500 ASN 32 DELETION SEQADV 8QLD C UNP O48500 PRO 33 DELETION SEQADV 8QLD C UNP O48500 ALA 34 DELETION SEQADV 8QLD C UNP O48500 ALA 35 DELETION SEQRES 1 A 143 MET ILE LYS ILE LYS LEU THR HIS PRO ASP CYS MET PRO SEQRES 2 A 143 LYS ILE GLY SER GLU ASP ALA ALA GLY MET ASP LEU ARG SEQRES 3 A 143 ALA PHE PHE ASN ASP LEU ARG ALA ILE ALA PRO GLY LYS SEQRES 4 A 143 SER LEU MET ILE ASP THR GLY VAL ALA VAL GLU ILE PRO SEQRES 5 A 143 ARG GLY TRP PHE GLY LEU VAL VAL PRO ARG SER SER LEU SEQRES 6 A 143 GLY LYS ARG HIS LEU MET ILE ALA ASN THR ALA GLY VAL SEQRES 7 A 143 ILE ASP SER ASP TYR ARG GLY THR ILE LYS MET ASN LEU SEQRES 8 A 143 TYR ASN TYR GLY SER GLU MET GLN THR LEU GLU ASN PHE SEQRES 9 A 143 GLU ARG LEU CYS GLN LEU VAL VAL LEU PRO HIS TYR SER SEQRES 10 A 143 THR HIS ASN PHE LYS ILE VAL ASP GLU LEU GLU GLU THR SEQRES 11 A 143 ILE ARG GLY GLU GLY GLY PHE GLY SER SER GLY SER LYS SEQRES 1 B 143 MET ILE LYS ILE LYS LEU THR HIS PRO ASP CYS MET PRO SEQRES 2 B 143 LYS ILE GLY SER GLU ASP ALA ALA GLY MET ASP LEU ARG SEQRES 3 B 143 ALA PHE PHE ASN ASP LEU ARG ALA ILE ALA PRO GLY LYS SEQRES 4 B 143 SER LEU MET ILE ASP THR GLY VAL ALA VAL GLU ILE PRO SEQRES 5 B 143 ARG GLY TRP PHE GLY LEU VAL VAL PRO ARG SER SER LEU SEQRES 6 B 143 GLY LYS ARG HIS LEU MET ILE ALA ASN THR ALA GLY VAL SEQRES 7 B 143 ILE ASP SER ASP TYR ARG GLY THR ILE LYS MET ASN LEU SEQRES 8 B 143 TYR ASN TYR GLY SER GLU MET GLN THR LEU GLU ASN PHE SEQRES 9 B 143 GLU ARG LEU CYS GLN LEU VAL VAL LEU PRO HIS TYR SER SEQRES 10 B 143 THR HIS ASN PHE LYS ILE VAL ASP GLU LEU GLU GLU THR SEQRES 11 B 143 ILE ARG GLY GLU GLY GLY PHE GLY SER SER GLY SER LYS SEQRES 1 C 143 MET ILE LYS ILE LYS LEU THR HIS PRO ASP CYS MET PRO SEQRES 2 C 143 LYS ILE GLY SER GLU ASP ALA ALA GLY MET ASP LEU ARG SEQRES 3 C 143 ALA PHE PHE ASN ASP LEU ARG ALA ILE ALA PRO GLY LYS SEQRES 4 C 143 SER LEU MET ILE ASP THR GLY VAL ALA VAL GLU ILE PRO SEQRES 5 C 143 ARG GLY TRP PHE GLY LEU VAL VAL PRO ARG SER SER LEU SEQRES 6 C 143 GLY LYS ARG HIS LEU MET ILE ALA ASN THR ALA GLY VAL SEQRES 7 C 143 ILE ASP SER ASP TYR ARG GLY THR ILE LYS MET ASN LEU SEQRES 8 C 143 TYR ASN TYR GLY SER GLU MET GLN THR LEU GLU ASN PHE SEQRES 9 C 143 GLU ARG LEU CYS GLN LEU VAL VAL LEU PRO HIS TYR SER SEQRES 10 C 143 THR HIS ASN PHE LYS ILE VAL ASP GLU LEU GLU GLU THR SEQRES 11 C 143 ILE ARG GLY GLU GLY GLY PHE GLY SER SER GLY SER LYS HET SO4 A 201 5 HET SO4 A 202 5 HET CL A 203 1 HET GOL B 201 6 HET SO4 B 202 5 HET GOL C 201 6 HET GOL C 202 12 HET SO4 C 203 5 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 SO4 4(O4 S 2-) FORMUL 6 CL CL 1- FORMUL 7 GOL 3(C3 H8 O3) FORMUL 12 HOH *160(H2 O) HELIX 1 AA1 HIS A 8 MET A 12 5 5 HELIX 2 AA2 SER A 63 HIS A 69 1 7 HELIX 3 AA3 HIS B 8 MET B 12 5 5 HELIX 4 AA4 SER B 63 GLY B 66 5 4 HELIX 5 AA5 HIS C 8 MET C 12 5 5 HELIX 6 AA6 SER C 64 HIS C 69 1 6 SHEET 1 AA1 5 LEU A 70 ILE A 72 0 SHEET 2 AA1 5 THR A 86 ASN A 93 -1 O TYR A 92 N MET A 71 SHEET 3 AA1 5 SER A 40 GLU A 50 -1 N VAL A 47 O ILE A 87 SHEET 4 AA1 5 ILE A 2 LEU A 6 -1 N LYS A 3 O GLU A 50 SHEET 5 AA1 5 PHE B 121 ILE B 123 1 O LYS B 122 N ILE A 4 SHEET 1 AA2 4 MET A 23 ARG A 26 0 SHEET 2 AA2 4 ARG A 106 PRO A 114 -1 O LEU A 110 N MET A 23 SHEET 3 AA2 4 TRP A 55 PRO A 61 -1 N LEU A 58 O VAL A 111 SHEET 4 AA2 4 GLY A 77 ILE A 79 -1 O ILE A 79 N GLY A 57 SHEET 1 AA3 2 ALA A 34 ILE A 35 0 SHEET 2 AA3 2 GLN A 99 THR A 100 -1 O GLN A 99 N ILE A 35 SHEET 1 AA4 5 PHE A 121 ILE A 123 0 SHEET 2 AA4 5 ILE C 2 LEU C 6 1 O ILE C 4 N LYS A 122 SHEET 3 AA4 5 SER C 40 GLU C 50 -1 O ALA C 48 N LYS C 5 SHEET 4 AA4 5 THR C 86 ASN C 93 -1 O MET C 89 N ILE C 43 SHEET 5 AA4 5 LEU C 70 ILE C 72 -1 N MET C 71 O TYR C 92 SHEET 1 AA5 5 LEU B 70 ILE B 72 0 SHEET 2 AA5 5 THR B 86 ASN B 93 -1 O TYR B 92 N MET B 71 SHEET 3 AA5 5 SER B 40 GLU B 50 -1 N VAL B 47 O ILE B 87 SHEET 4 AA5 5 ILE B 2 LEU B 6 -1 N LYS B 5 O ALA B 48 SHEET 5 AA5 5 PHE C 121 ILE C 123 1 O LYS C 122 N ILE B 4 SHEET 1 AA6 4 MET B 23 ARG B 26 0 SHEET 2 AA6 4 ARG B 106 PRO B 114 -1 O LEU B 110 N MET B 23 SHEET 3 AA6 4 TRP B 55 PRO B 61 -1 N VAL B 60 O GLN B 109 SHEET 4 AA6 4 GLY B 77 ILE B 79 -1 O ILE B 79 N GLY B 57 SHEET 1 AA7 2 ARG B 33 ILE B 35 0 SHEET 2 AA7 2 GLN B 99 LEU B 101 -1 O GLN B 99 N ILE B 35 SHEET 1 AA8 4 MET C 23 ARG C 26 0 SHEET 2 AA8 4 ARG C 106 PRO C 114 -1 O LEU C 107 N LEU C 25 SHEET 3 AA8 4 TRP C 55 PRO C 61 -1 N LEU C 58 O VAL C 111 SHEET 4 AA8 4 GLY C 77 ILE C 79 -1 O ILE C 79 N GLY C 57 SHEET 1 AA9 2 ALA C 34 ILE C 35 0 SHEET 2 AA9 2 GLN C 99 THR C 100 -1 O GLN C 99 N ILE C 35 CRYST1 88.726 88.726 99.999 90.00 90.00 120.00 P 65 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011271 0.006507 0.000000 0.00000 SCALE2 0.000000 0.013014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010000 0.00000