data_8QMI # _entry.id 8QMI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8QMI pdb_00008qmi 10.2210/pdb8qmi/pdb WWPDB D_1292133489 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-05-01 2 'Structure model' 1 1 2024-05-22 3 'Structure model' 1 2 2024-07-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8QMI _pdbx_database_status.recvd_initial_deposition_date 2023-09-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name PDB _pdbx_database_related.details '8QMH contains the same RNA complex with ANP77' _pdbx_database_related.db_id 8QMH _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email kiliszek@ibch.poznan.pl _pdbx_contact_author.name_first Agnieszka _pdbx_contact_author.name_last Kiliszek _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2871-7535 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Blaszczyk, L.' 1 0000-0002-1907-4857 'Kiliszek, A.' 2 0000-0002-2871-7535 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 52 _citation.language ? _citation.page_first 6707 _citation.page_last 6717 _citation.title ;Antisense RNA C9orf72 hexanucleotide repeat associated with amyotrophic lateral sclerosis and frontotemporal dementia forms a triplex-like structure and binds small synthetic ligand. ; _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkae376 _citation.pdbx_database_id_PubMed 38738637 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Blaszczyk, L.' 1 ? primary 'Ryczek, M.' 2 ? primary 'Das, B.' 3 0000-0002-9885-4885 primary 'Mateja-Pluta, M.' 4 ? primary 'Bejger, M.' 5 ? primary 'Sliwiak, J.' 6 ? primary 'Nakatani, K.' 7 0000-0002-1705-5265 primary 'Kiliszek, A.' 8 0000-0002-2871-7535 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*GP*CP*CP*CP*C)-3') ; 1866.182 4 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 water nat water 18.015 108 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCCCC _entity_poly.pdbx_seq_one_letter_code_can GGCCCC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 C n 1 5 C n 1 6 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 C 4 4 4 C C A . n A 1 5 C 5 5 5 C C A . n A 1 6 C 6 6 6 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 G 2 2 2 G G B . n B 1 3 C 3 3 3 C C B . n B 1 4 C 4 4 4 C C B . n B 1 5 C 5 5 5 C C B . n B 1 6 C 6 6 6 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 G 2 2 2 G G C . n C 1 3 C 3 3 3 C C C . n C 1 4 C 4 4 4 C C C . n C 1 5 C 5 5 5 C C C . n C 1 6 C 6 6 6 C C C . n D 1 1 G 1 1 1 G G D . n D 1 2 G 2 2 2 G G D . n D 1 3 C 3 3 3 C C D . n D 1 4 C 4 4 4 C C D . n D 1 5 C 5 5 5 C C D . n D 1 6 C 6 6 6 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG 1 101 1 MG MG A . F 2 MG 1 101 2 MG MG C . G 3 HOH 1 201 67 HOH HOH A . G 3 HOH 2 202 88 HOH HOH A . G 3 HOH 3 203 98 HOH HOH A . G 3 HOH 4 204 44 HOH HOH A . G 3 HOH 5 205 94 HOH HOH A . G 3 HOH 6 206 77 HOH HOH A . G 3 HOH 7 207 59 HOH HOH A . G 3 HOH 8 208 29 HOH HOH A . G 3 HOH 9 209 45 HOH HOH A . G 3 HOH 10 210 17 HOH HOH A . G 3 HOH 11 211 86 HOH HOH A . G 3 HOH 12 212 40 HOH HOH A . G 3 HOH 13 213 57 HOH HOH A . G 3 HOH 14 214 75 HOH HOH A . G 3 HOH 15 215 41 HOH HOH A . G 3 HOH 16 216 96 HOH HOH A . G 3 HOH 17 217 103 HOH HOH A . G 3 HOH 18 218 9 HOH HOH A . G 3 HOH 19 219 46 HOH HOH A . G 3 HOH 20 220 13 HOH HOH A . G 3 HOH 21 221 38 HOH HOH A . G 3 HOH 22 222 54 HOH HOH A . G 3 HOH 23 223 47 HOH HOH A . G 3 HOH 24 224 106 HOH HOH A . H 3 HOH 1 101 71 HOH HOH B . H 3 HOH 2 102 58 HOH HOH B . H 3 HOH 3 103 89 HOH HOH B . H 3 HOH 4 104 69 HOH HOH B . H 3 HOH 5 105 78 HOH HOH B . H 3 HOH 6 106 64 HOH HOH B . H 3 HOH 7 107 104 HOH HOH B . H 3 HOH 8 108 108 HOH HOH B . H 3 HOH 9 109 21 HOH HOH B . H 3 HOH 10 110 65 HOH HOH B . H 3 HOH 11 111 32 HOH HOH B . H 3 HOH 12 112 72 HOH HOH B . H 3 HOH 13 113 37 HOH HOH B . H 3 HOH 14 114 68 HOH HOH B . H 3 HOH 15 115 50 HOH HOH B . H 3 HOH 16 116 49 HOH HOH B . H 3 HOH 17 117 80 HOH HOH B . H 3 HOH 18 118 12 HOH HOH B . H 3 HOH 19 119 74 HOH HOH B . H 3 HOH 20 120 66 HOH HOH B . H 3 HOH 21 121 4 HOH HOH B . H 3 HOH 22 122 35 HOH HOH B . H 3 HOH 23 123 19 HOH HOH B . H 3 HOH 24 124 42 HOH HOH B . H 3 HOH 25 125 63 HOH HOH B . H 3 HOH 26 126 102 HOH HOH B . H 3 HOH 27 127 87 HOH HOH B . I 3 HOH 1 201 27 HOH HOH C . I 3 HOH 2 202 92 HOH HOH C . I 3 HOH 3 203 90 HOH HOH C . I 3 HOH 4 204 20 HOH HOH C . I 3 HOH 5 205 25 HOH HOH C . I 3 HOH 6 206 36 HOH HOH C . I 3 HOH 7 207 23 HOH HOH C . I 3 HOH 8 208 61 HOH HOH C . I 3 HOH 9 209 100 HOH HOH C . I 3 HOH 10 210 76 HOH HOH C . I 3 HOH 11 211 10 HOH HOH C . I 3 HOH 12 212 3 HOH HOH C . I 3 HOH 13 213 34 HOH HOH C . I 3 HOH 14 214 5 HOH HOH C . I 3 HOH 15 215 39 HOH HOH C . I 3 HOH 16 216 11 HOH HOH C . I 3 HOH 17 217 16 HOH HOH C . I 3 HOH 18 218 60 HOH HOH C . I 3 HOH 19 219 18 HOH HOH C . I 3 HOH 20 220 22 HOH HOH C . I 3 HOH 21 221 55 HOH HOH C . I 3 HOH 22 222 79 HOH HOH C . I 3 HOH 23 223 99 HOH HOH C . I 3 HOH 24 224 51 HOH HOH C . I 3 HOH 25 225 84 HOH HOH C . I 3 HOH 26 226 48 HOH HOH C . I 3 HOH 27 227 82 HOH HOH C . I 3 HOH 28 228 81 HOH HOH C . I 3 HOH 29 229 107 HOH HOH C . J 3 HOH 1 101 52 HOH HOH D . J 3 HOH 2 102 43 HOH HOH D . J 3 HOH 3 103 7 HOH HOH D . J 3 HOH 4 104 24 HOH HOH D . J 3 HOH 5 105 83 HOH HOH D . J 3 HOH 6 106 14 HOH HOH D . J 3 HOH 7 107 26 HOH HOH D . J 3 HOH 8 108 53 HOH HOH D . J 3 HOH 9 109 93 HOH HOH D . J 3 HOH 10 110 1 HOH HOH D . J 3 HOH 11 111 97 HOH HOH D . J 3 HOH 12 112 30 HOH HOH D . J 3 HOH 13 113 73 HOH HOH D . J 3 HOH 14 114 6 HOH HOH D . J 3 HOH 15 115 28 HOH HOH D . J 3 HOH 16 116 15 HOH HOH D . J 3 HOH 17 117 33 HOH HOH D . J 3 HOH 18 118 8 HOH HOH D . J 3 HOH 19 119 91 HOH HOH D . J 3 HOH 20 120 70 HOH HOH D . J 3 HOH 21 121 2 HOH HOH D . J 3 HOH 22 122 101 HOH HOH D . J 3 HOH 23 123 56 HOH HOH D . J 3 HOH 24 124 31 HOH HOH D . J 3 HOH 25 125 85 HOH HOH D . J 3 HOH 26 126 95 HOH HOH D . J 3 HOH 27 127 105 HOH HOH D . J 3 HOH 28 128 62 HOH HOH D . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0415 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrysalisPro ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8QMI _cell.details ? _cell.formula_units_Z ? _cell.length_a 41.759 _cell.length_a_esd ? _cell.length_b 46.637 _cell.length_b_esd ? _cell.length_c 51.492 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 32 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8QMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8QMI _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.68 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 26.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.08 M NaCl, 0.02 M Magnesium chloride hexahydrate, 0.04 M Na cacodylate trihydrate pH 6.0, 35% v/v MPD, 0.012 M Spermine tetrahydrochloride ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 292 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU HyPix-6000HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-10-29 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54056 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU PhotonJet-R' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54056 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8QMI _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 21.251 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8334 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.3 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.124 _reflns.pdbx_Rpim_I_all 0.044 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.99 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.116 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.044 _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.58 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1191 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.276 _reflns_shell.pdbx_Rpim_I_all 0.276 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.846 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.553 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.108 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][2] 0.450 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] -0.557 _refine.B_iso_max ? _refine.B_iso_mean 8.629 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.970 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8QMI _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 21.251 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8309 _refine.ls_number_reflns_R_free 404 _refine.ls_number_reflns_R_work 7905 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.628 _refine.ls_percent_reflns_R_free 4.862 _refine.ls_R_factor_all 0.171 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2255 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1682 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL PLUS MASK' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.092 _refine.pdbx_overall_ESU_R_Free 0.100 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 492 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 108 _refine_hist.number_atoms_total 602 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 21.251 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 0.011 610 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.019 270 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.866 1.844 942 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.195 1.667 648 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 2.073 5.000 27 ? r_dihedral_angle_other_2_deg ? ? 'X-RAY DIFFRACTION' ? 0.073 0.200 131 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.021 0.020 321 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.017 0.020 108 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.187 0.200 68 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.199 0.200 249 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.255 0.200 198 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.087 0.200 156 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.273 0.200 82 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.714 0.200 1 ? r_symmetry_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.053 0.200 4 ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? 0.173 0.200 52 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.186 0.200 61 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.331 0.200 55 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.072 0.200 2 ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? 0.835 0.964 610 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 0.835 0.964 611 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 1.274 1.758 942 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 1.273 1.758 943 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.039 17.041 868 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 3.772 14.268 829 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.500 1.539 596 . 35 561 100.0000 . 0.297 . . 0.294 . . . . . 0.268 . 20 . 0.930 0.883 0.355 'X-RAY DIFFRACTION' 1.539 1.581 588 . 28 560 100.0000 . 0.203 . . 0.201 . . . . . 0.176 . 20 . 0.967 0.960 0.229 'X-RAY DIFFRACTION' 1.581 1.626 573 . 25 547 99.8255 . 0.191 . . 0.189 . . . . . 0.158 . 20 . 0.975 0.961 0.241 'X-RAY DIFFRACTION' 1.626 1.676 554 . 31 523 100.0000 . 0.174 . . 0.175 . . . . . 0.141 . 20 . 0.980 0.989 0.167 'X-RAY DIFFRACTION' 1.676 1.731 542 . 34 507 99.8155 . 0.168 . . 0.169 . . . . . 0.136 . 20 . 0.982 0.982 0.157 'X-RAY DIFFRACTION' 1.731 1.791 522 . 21 501 100.0000 . 0.162 . . 0.162 . . . . . 0.130 . 20 . 0.982 0.983 0.169 'X-RAY DIFFRACTION' 1.791 1.858 502 . 25 476 99.8008 . 0.194 . . 0.188 . . . . . 0.152 . 20 . 0.976 0.923 0.340 'X-RAY DIFFRACTION' 1.858 1.933 488 . 16 471 99.7951 . 0.203 . . 0.198 . . . . . 0.163 . 20 . 0.977 0.948 0.340 'X-RAY DIFFRACTION' 1.933 2.018 467 . 21 445 99.7859 . 0.173 . . 0.169 . . . . . 0.142 . 20 . 0.981 0.964 0.259 'X-RAY DIFFRACTION' 2.018 2.116 452 . 24 426 99.5575 . 0.170 . . 0.167 . . . . . 0.142 . 20 . 0.983 0.969 0.232 'X-RAY DIFFRACTION' 2.116 2.229 444 . 19 424 99.7748 . 0.144 . . 0.140 . . . . . 0.120 . 20 . 0.987 0.964 0.280 'X-RAY DIFFRACTION' 2.229 2.363 393 . 23 369 99.7455 . 0.160 . . 0.155 . . . . . 0.129 . 20 . 0.986 0.947 0.282 'X-RAY DIFFRACTION' 2.363 2.524 382 . 19 360 99.2147 . 0.171 . . 0.167 . . . . . 0.147 . 20 . 0.983 0.972 0.231 'X-RAY DIFFRACTION' 2.524 2.723 364 . 14 349 99.7253 . 0.184 . . 0.180 . . . . . 0.158 . 20 . 0.984 0.950 0.297 'X-RAY DIFFRACTION' 2.723 2.978 334 . 17 317 100.0000 . 0.153 . . 0.149 . . . . . 0.132 . 20 . 0.988 0.972 0.250 'X-RAY DIFFRACTION' 2.978 3.321 305 . 13 289 99.0164 . 0.132 . . 0.131 . . . . . 0.133 . 20 . 0.993 0.991 0.145 'X-RAY DIFFRACTION' 3.321 3.819 279 . 11 262 97.8495 . 0.152 . . 0.152 . . . . . 0.145 . 20 . 0.988 0.992 0.148 'X-RAY DIFFRACTION' 3.819 4.641 238 . 12 223 98.7395 . 0.138 . . 0.136 . . . . . 0.129 . 20 . 0.989 0.981 0.179 'X-RAY DIFFRACTION' 4.641 6.412 187 . 9 178 100.0000 . 0.145 . . 0.146 . . . . . 0.146 . 20 . 0.987 0.992 0.116 'X-RAY DIFFRACTION' 6.412 21.251 126 . 7 117 98.4127 . 0.191 . . 0.183 . . . . . 0.186 . 20 . 0.978 0.945 0.331 # _struct.entry_id 8QMI _struct.title 'Crystal structure of RNA G2C4 repeats - native model' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8QMI _struct_keywords.text 'RNA, G2C4 repeats, ALS, FTD, hexanucleotide repeats' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8QMI _struct_ref.pdbx_db_accession 8QMI _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8QMI A 1 ? 6 ? 8QMI 1 ? 6 ? 1 6 2 1 8QMI B 1 ? 6 ? 8QMI 1 ? 6 ? 1 6 3 1 8QMI C 1 ? 6 ? 8QMI 1 ? 6 ? 1 6 4 1 8QMI D 1 ? 6 ? 8QMI 1 ? 6 ? 1 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1950 ? 1 MORE -23 ? 1 'SSA (A^2)' 4410 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A C 4 OP2 ? ? ? 1_555 E MG . MG ? ? A C 4 A MG 101 1_555 ? ? ? ? ? ? ? 1.964 ? ? metalc2 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 213 1_555 ? ? ? ? ? ? ? 2.097 ? ? metalc3 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O A ? A MG 101 A HOH 216 1_555 ? ? ? ? ? ? ? 2.418 ? ? metalc4 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 219 1_555 ? ? ? ? ? ? ? 1.980 ? ? metalc5 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 101 B HOH 104 6_445 ? ? ? ? ? ? ? 2.103 ? ? metalc6 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 101 B HOH 109 3_555 ? ? ? ? ? ? ? 2.130 ? ? metalc7 metalc ? ? C C 6 OP1 ? ? ? 1_555 F MG . MG ? ? C C 6 C MG 101 1_555 ? ? ? ? ? ? ? 1.918 ? ? metalc8 metalc ? ? C C 6 OP1 ? ? ? 1_555 F MG . MG ? ? C C 6 C MG 101 3_555 ? ? ? ? ? ? ? 1.918 ? ? metalc9 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? C MG 101 C HOH 225 1_555 ? ? ? ? ? ? ? 2.101 ? ? metalc10 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? C MG 101 C HOH 225 3_555 ? ? ? ? ? ? ? 2.101 ? ? metalc11 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? C MG 101 D HOH 104 4_555 ? ? ? ? ? ? ? 2.234 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 1 B C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 1 B C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 1 B C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 1 O6 ? ? ? 1_555 C C 5 N4 ? ? A G 1 C C 5 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog5 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 2 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 2 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 2 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 2 O6 ? ? ? 1_555 C C 6 N4 ? ? A G 2 C C 6 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog9 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 3 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 3 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 3 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 4 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 4 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 4 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B C 5 N4 ? ? ? 1_555 D G 1 O6 ? ? B C 5 D G 1 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog16 hydrog ? ? B C 6 N4 ? ? ? 1_555 D G 2 O6 ? ? B C 6 D G 2 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog17 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 4 N3 ? ? C G 1 D C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 4 O2 ? ? C G 1 D C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 4 N4 ? ? C G 1 D C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 3 N3 ? ? C G 2 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 3 O2 ? ? C G 2 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 3 N4 ? ? C G 2 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C C 3 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 3 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C C 3 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 3 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C C 3 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 3 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C C 4 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 4 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C C 4 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 4 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C C 4 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 4 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A C 4 ? A C 4 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 213 ? 1_555 87.0 ? 2 OP2 ? A C 4 ? A C 4 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O A G HOH . ? A HOH 216 ? 1_555 80.8 ? 3 O ? G HOH . ? A HOH 213 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O A G HOH . ? A HOH 216 ? 1_555 77.4 ? 4 OP2 ? A C 4 ? A C 4 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 219 ? 1_555 96.0 ? 5 O ? G HOH . ? A HOH 213 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 219 ? 1_555 102.7 ? 6 O A G HOH . ? A HOH 216 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 219 ? 1_555 176.9 ? 7 OP2 ? A C 4 ? A C 4 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? H HOH . ? B HOH 104 ? 6_445 172.1 ? 8 O ? G HOH . ? A HOH 213 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? H HOH . ? B HOH 104 ? 6_445 93.2 ? 9 O A G HOH . ? A HOH 216 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? H HOH . ? B HOH 104 ? 6_445 91.5 ? 10 O ? G HOH . ? A HOH 219 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? H HOH . ? B HOH 104 ? 6_445 91.7 ? 11 OP2 ? A C 4 ? A C 4 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? H HOH . ? B HOH 109 ? 3_555 93.6 ? 12 O ? G HOH . ? A HOH 213 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? H HOH . ? B HOH 109 ? 3_555 163.0 ? 13 O A G HOH . ? A HOH 216 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? H HOH . ? B HOH 109 ? 3_555 85.9 ? 14 O ? G HOH . ? A HOH 219 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? H HOH . ? B HOH 109 ? 3_555 94.1 ? 15 O ? H HOH . ? B HOH 104 ? 6_445 MG ? E MG . ? A MG 101 ? 1_555 O ? H HOH . ? B HOH 109 ? 3_555 84.0 ? 16 OP1 ? C C 6 ? C C 6 ? 1_555 MG ? F MG . ? C MG 101 ? 1_555 OP1 ? C C 6 ? C C 6 ? 1_555 0.0 ? 17 OP1 ? C C 6 ? C C 6 ? 1_555 MG ? F MG . ? C MG 101 ? 1_555 O ? I HOH . ? C HOH 225 ? 1_555 102.8 ? 18 OP1 ? C C 6 ? C C 6 ? 1_555 MG ? F MG . ? C MG 101 ? 1_555 O ? I HOH . ? C HOH 225 ? 1_555 102.8 ? 19 OP1 ? C C 6 ? C C 6 ? 1_555 MG ? F MG . ? C MG 101 ? 1_555 O ? I HOH . ? C HOH 225 ? 3_555 152.7 ? 20 OP1 ? C C 6 ? C C 6 ? 1_555 MG ? F MG . ? C MG 101 ? 1_555 O ? I HOH . ? C HOH 225 ? 3_555 152.7 ? 21 O ? I HOH . ? C HOH 225 ? 1_555 MG ? F MG . ? C MG 101 ? 1_555 O ? I HOH . ? C HOH 225 ? 3_555 63.3 ? 22 OP1 ? C C 6 ? C C 6 ? 1_555 MG ? F MG . ? C MG 101 ? 1_555 O ? J HOH . ? D HOH 104 ? 4_555 92.8 ? 23 OP1 ? C C 6 ? C C 6 ? 1_555 MG ? F MG . ? C MG 101 ? 1_555 O ? J HOH . ? D HOH 104 ? 4_555 92.8 ? 24 O ? I HOH . ? C HOH 225 ? 1_555 MG ? F MG . ? C MG 101 ? 1_555 O ? J HOH . ? D HOH 104 ? 4_555 104.9 ? 25 O ? I HOH . ? C HOH 225 ? 3_555 MG ? F MG . ? C MG 101 ? 1_555 O ? J HOH . ? D HOH 104 ? 4_555 70.4 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 C _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 203 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 C _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 222 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_555 _pdbx_validate_symm_contact.dist 2.07 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A C 5 ? A "C2'" A C 5 ? A "C1'" A C 5 ? A 96.13 101.30 -5.17 0.70 N 2 1 "O3'" A C 5 ? B P A C 6 ? B "O5'" A C 6 ? B 92.17 104.00 -11.83 1.90 Y 3 1 "O3'" B C 3 ? ? P B C 4 ? ? OP2 B C 4 ? ? 117.41 110.50 6.91 1.10 Y # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 C MG 101 ? F MG . 2 1 D HOH 128 ? J HOH . # _pdbx_entry_details.entry_id 8QMI _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 G OP3 O N N 36 G P P N N 37 G OP1 O N N 38 G OP2 O N N 39 G "O5'" O N N 40 G "C5'" C N N 41 G "C4'" C N R 42 G "O4'" O N N 43 G "C3'" C N S 44 G "O3'" O N N 45 G "C2'" C N R 46 G "O2'" O N N 47 G "C1'" C N R 48 G N9 N Y N 49 G C8 C Y N 50 G N7 N Y N 51 G C5 C Y N 52 G C6 C N N 53 G O6 O N N 54 G N1 N N N 55 G C2 C N N 56 G N2 N N N 57 G N3 N N N 58 G C4 C Y N 59 G HOP3 H N N 60 G HOP2 H N N 61 G "H5'" H N N 62 G "H5''" H N N 63 G "H4'" H N N 64 G "H3'" H N N 65 G "HO3'" H N N 66 G "H2'" H N N 67 G "HO2'" H N N 68 G "H1'" H N N 69 G H8 H N N 70 G H1 H N N 71 G H21 H N N 72 G H22 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 MG MG MG N N 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8QMI 'double helix' 8QMI 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 A C 4 1_555 -0.278 -0.130 0.070 -4.308 -6.913 0.760 1 B_G1:C4_A B 1 ? A 4 ? 19 1 1 B G 2 1_555 A C 3 1_555 -0.248 -0.113 -0.135 -5.460 -12.190 1.352 2 B_G2:C3_A B 2 ? A 3 ? 19 1 1 B C 3 1_555 A G 2 1_555 0.316 -0.216 -0.192 -0.906 -6.734 -0.384 3 B_C3:G2_A B 3 ? A 2 ? 19 1 1 B C 4 1_555 A G 1 1_555 0.203 -0.134 -0.026 -2.013 -2.412 -2.119 4 B_C4:G1_A B 4 ? A 1 ? 19 1 1 D G 1 1_555 C C 4 1_555 -0.258 -0.144 -0.180 -8.318 -9.649 1.368 5 D_G1:C4_C D 1 ? C 4 ? 19 1 1 D G 2 1_555 C C 3 1_555 -0.251 -0.176 -0.193 -6.219 -4.545 -2.489 6 D_G2:C3_C D 2 ? C 3 ? 19 1 1 D C 3 1_555 C G 2 1_555 0.416 -0.100 -0.120 4.696 -8.447 1.924 7 D_C3:G2_C D 3 ? C 2 ? 19 1 1 D C 4 1_555 C G 1 1_555 0.164 -0.135 -0.032 3.005 -10.368 -1.699 8 D_C4:G1_C D 4 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 A C 4 1_555 B G 2 1_555 A C 3 1_555 0.424 -2.331 3.274 2.397 7.955 30.269 -5.685 -0.371 2.616 14.885 -4.485 31.363 1 BB_G1G2:C3C4_AA B 1 ? A 4 ? B 2 ? A 3 ? 1 B G 2 1_555 A C 3 1_555 B C 3 1_555 A G 2 1_555 -0.629 -1.617 3.182 -1.068 2.767 32.487 -3.338 0.943 3.056 4.933 1.904 32.619 2 BB_G2C3:G2C3_AA B 2 ? A 3 ? B 3 ? A 2 ? 1 B C 3 1_555 A G 2 1_555 B C 4 1_555 A G 1 1_555 0.252 -2.171 3.292 1.204 8.142 30.958 -5.298 -0.256 2.657 14.925 -2.208 32.007 3 BB_C3C4:G1G2_AA B 3 ? A 2 ? B 4 ? A 1 ? 1 B C 4 1_555 A G 1 1_555 D G 1 1_555 C C 4 1_555 1.331 -4.837 3.149 2.100 10.108 95.901 -3.404 -0.861 2.778 6.791 -1.411 96.320 4 BD_C4G1:C4G1_CA B 4 ? A 1 ? D 1 ? C 4 ? 1 D G 1 1_555 C C 4 1_555 D G 2 1_555 C C 3 1_555 -1.050 -2.081 3.142 -1.643 6.300 29.698 -5.114 1.705 2.706 12.109 3.157 30.387 5 DD_G1G2:C3C4_CC D 1 ? C 4 ? D 2 ? C 3 ? 1 D G 2 1_555 C C 3 1_555 D C 3 1_555 C G 2 1_555 0.472 -1.205 3.087 0.494 6.321 32.898 -3.040 -0.745 2.820 11.034 -0.862 33.487 6 DD_G2C3:G2C3_CC D 2 ? C 3 ? D 3 ? C 2 ? 1 D C 3 1_555 C G 2 1_555 D C 4 1_555 C G 1 1_555 -0.130 -1.833 3.250 -0.601 9.884 30.838 -4.879 0.137 2.558 18.014 1.095 32.352 7 DD_C3C4:G1G2_CC D 3 ? C 2 ? D 4 ? C 1 ? # _pdbx_audit_support.funding_organization 'Polish National Science Centre' _pdbx_audit_support.country Poland _pdbx_audit_support.grant_number UMO-2022/45/B/NZ7/03543 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id MG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id MG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8QMH _pdbx_initial_refinement_model.details ? # _pdbx_related_exp_data_set.ordinal 1 _pdbx_related_exp_data_set.data_reference 10.18150/FESTPM _pdbx_related_exp_data_set.metadata_reference ? _pdbx_related_exp_data_set.data_set_type 'diffraction image data' _pdbx_related_exp_data_set.details ? # _atom_sites.entry_id 8QMI _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.023947 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021442 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019420 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512 0.2156 H 1 1 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 0.0030 MG 12 12 5.4265 2.8275 2.1759 79.2611 1.2283 0.3808 2.3099 7.1937 1.0226 N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826 -11.5379 O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089 0.2508 P 15 15 6.4348 1.9067 4.1793 27.1570 1.7801 0.5260 1.4909 68.1645 1.3966 # loop_