HEADER HYDROLASE 25-SEP-23 8QN0 TITLE SOLUBLE EPOXIDE HYDROLASE IN COMPLEX WITH RK3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL EPOXIDE HYDROLASE 2; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.3.2.10,3.1.3.76; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHX2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KUMAR,F.ZHU,J.M.H.EHRLER,F.LI,C.EMPEL,Y.XU,I.ATODIRESEI, AUTHOR 2 R.M.KOENIGS,E.PROSCHAK,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 1 14-FEB-24 8QN0 0 JRNL AUTH F.LI,W.F.ZHU,C.EMPEL,O.DATSENKO,A.KUMAR,Y.XU,J.H.M.EHRLER, JRNL AUTH 2 I.ATODIRESEI,S.KNAPP,P.K.MYKHAILIUK,E.PROSCHAK,R.M.KOENIGS JRNL TITL PHOTOSENSITIZATION ENABLES PAUSON-KHAND-TYPE REACTIONS WITH JRNL TITL 2 NITRENES. JRNL REF SCIENCE V. 383 498 2024 JRNL REFN ESSN 1095-9203 JRNL PMID 38301027 JRNL DOI 10.1126/SCIENCE.ADM8095 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 104114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 5370 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7701 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 392 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5065 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 449 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90000 REMARK 3 B22 (A**2) : -1.32000 REMARK 3 B33 (A**2) : 0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.82000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.341 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5382 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4892 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7328 ; 1.731 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11294 ; 0.585 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 656 ; 6.877 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 34 ; 7.307 ; 6.765 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 853 ;14.575 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 761 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6383 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1257 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2603 ; 2.563 ; 2.379 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2603 ; 2.563 ; 2.379 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3266 ; 3.662 ; 4.269 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3267 ; 3.662 ; 4.272 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2779 ; 3.385 ; 2.645 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2780 ; 3.384 ; 2.645 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4063 ; 5.065 ; 4.728 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6151 ; 6.547 ;23.610 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6152 ; 6.547 ;23.610 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8QN0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292133550. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109510 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 44.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.69400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG5000MME, 0.1M BIS-TRIS PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.23900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 198 REMARK 465 GLY A 199 REMARK 465 SER A 200 REMARK 465 SER A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 HIS A 206 REMARK 465 HIS A 207 REMARK 465 SER A 208 REMARK 465 SER A 209 REMARK 465 GLY A 210 REMARK 465 LEU A 211 REMARK 465 VAL A 212 REMARK 465 PRO A 213 REMARK 465 ARG A 214 REMARK 465 GLY A 215 REMARK 465 SER A 216 REMARK 465 HIS A 217 REMARK 465 MET A 218 REMARK 465 ALA A 219 REMARK 465 SER A 220 REMARK 465 MET A 221 REMARK 465 LEU A 222 REMARK 465 ASN A 223 REMARK 465 THR A 224 REMARK 465 PRO A 225 REMARK 465 ASN A 548 REMARK 465 PRO A 549 REMARK 465 PRO A 550 REMARK 465 VAL A 551 REMARK 465 VAL A 552 REMARK 465 SER A 553 REMARK 465 LYS A 554 REMARK 465 MET A 555 REMARK 465 LEU A 556 REMARK 465 LEU A 557 REMARK 465 GLU A 558 REMARK 465 HIS A 559 REMARK 465 HIS A 560 REMARK 465 HIS A 561 REMARK 465 HIS A 562 REMARK 465 HIS A 563 REMARK 465 HIS A 564 REMARK 465 MET B 198 REMARK 465 GLY B 199 REMARK 465 SER B 200 REMARK 465 SER B 201 REMARK 465 HIS B 202 REMARK 465 HIS B 203 REMARK 465 HIS B 204 REMARK 465 HIS B 205 REMARK 465 HIS B 206 REMARK 465 HIS B 207 REMARK 465 SER B 208 REMARK 465 SER B 209 REMARK 465 GLY B 210 REMARK 465 LEU B 211 REMARK 465 VAL B 212 REMARK 465 PRO B 213 REMARK 465 ARG B 214 REMARK 465 GLY B 215 REMARK 465 SER B 216 REMARK 465 HIS B 217 REMARK 465 MET B 218 REMARK 465 ALA B 219 REMARK 465 SER B 220 REMARK 465 MET B 221 REMARK 465 LEU B 222 REMARK 465 ASN B 223 REMARK 465 THR B 224 REMARK 465 PRO B 225 REMARK 465 ALA B 226 REMARK 465 ALA B 377 REMARK 465 ASN B 378 REMARK 465 PRO B 379 REMARK 465 ARG B 547 REMARK 465 ASN B 548 REMARK 465 PRO B 549 REMARK 465 PRO B 550 REMARK 465 VAL B 551 REMARK 465 VAL B 552 REMARK 465 SER B 553 REMARK 465 LYS B 554 REMARK 465 MET B 555 REMARK 465 LEU B 556 REMARK 465 LEU B 557 REMARK 465 GLU B 558 REMARK 465 HIS B 559 REMARK 465 HIS B 560 REMARK 465 HIS B 561 REMARK 465 HIS B 562 REMARK 465 HIS B 563 REMARK 465 HIS B 564 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 369 CG SD CE REMARK 470 LEU A 372 CG CD1 CD2 REMARK 470 GLU A 373 CG CD OE1 OE2 REMARK 470 LYS A 376 CG CD CE NZ REMARK 470 ASN A 378 CG OD1 ND2 REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 470 GLU A 434 CG CD OE1 OE2 REMARK 470 GLU A 435 CG CD OE1 OE2 REMARK 470 LEU A 480 CG CD1 CD2 REMARK 470 GLN A 502 CG CD OE1 NE2 REMARK 470 ARG A 547 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 228 CG CD1 CD2 REMARK 470 MET B 369 CG SD CE REMARK 470 LEU B 372 CG CD1 CD2 REMARK 470 GLU B 373 CG CD OE1 OE2 REMARK 470 SER B 374 OG REMARK 470 ILE B 375 CG1 CG2 CD1 REMARK 470 LYS B 376 CG CD CE NZ REMARK 470 SER B 418 OG REMARK 470 LYS B 421 CG CD CE NZ REMARK 470 GLU B 424 CG CD OE1 OE2 REMARK 470 SER B 479 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 459 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG B 287 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 231 -166.94 -113.19 REMARK 500 GLU A 269 -147.64 -115.80 REMARK 500 ASP A 335 -131.08 61.08 REMARK 500 ASN A 359 -42.73 78.81 REMARK 500 SER B 231 -167.93 -108.68 REMARK 500 GLU B 269 -149.56 -119.95 REMARK 500 ASP B 335 -130.87 64.39 REMARK 500 ASN B 359 -44.59 82.06 REMARK 500 LYS B 421 41.36 39.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 291 ASP A 292 146.27 REMARK 500 MET B 291 ASP B 292 146.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 460 0.07 SIDE CHAIN REMARK 500 ARG A 471 0.09 SIDE CHAIN REMARK 500 ARG B 460 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 975 DISTANCE = 5.86 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8QMZ RELATED DB: PDB DBREF 8QN0 A 222 555 UNP P34913 HYES_HUMAN 222 555 DBREF 8QN0 B 222 555 UNP P34913 HYES_HUMAN 222 555 SEQADV 8QN0 MET A 198 UNP P34913 INITIATING METHIONINE SEQADV 8QN0 GLY A 199 UNP P34913 EXPRESSION TAG SEQADV 8QN0 SER A 200 UNP P34913 EXPRESSION TAG SEQADV 8QN0 SER A 201 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS A 202 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS A 203 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS A 204 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS A 205 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS A 206 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS A 207 UNP P34913 EXPRESSION TAG SEQADV 8QN0 SER A 208 UNP P34913 EXPRESSION TAG SEQADV 8QN0 SER A 209 UNP P34913 EXPRESSION TAG SEQADV 8QN0 GLY A 210 UNP P34913 EXPRESSION TAG SEQADV 8QN0 LEU A 211 UNP P34913 EXPRESSION TAG SEQADV 8QN0 VAL A 212 UNP P34913 EXPRESSION TAG SEQADV 8QN0 PRO A 213 UNP P34913 EXPRESSION TAG SEQADV 8QN0 ARG A 214 UNP P34913 EXPRESSION TAG SEQADV 8QN0 GLY A 215 UNP P34913 EXPRESSION TAG SEQADV 8QN0 SER A 216 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS A 217 UNP P34913 EXPRESSION TAG SEQADV 8QN0 MET A 218 UNP P34913 EXPRESSION TAG SEQADV 8QN0 ALA A 219 UNP P34913 EXPRESSION TAG SEQADV 8QN0 SER A 220 UNP P34913 EXPRESSION TAG SEQADV 8QN0 MET A 221 UNP P34913 EXPRESSION TAG SEQADV 8QN0 LEU A 556 UNP P34913 EXPRESSION TAG SEQADV 8QN0 LEU A 557 UNP P34913 EXPRESSION TAG SEQADV 8QN0 GLU A 558 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS A 559 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS A 560 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS A 561 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS A 562 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS A 563 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS A 564 UNP P34913 EXPRESSION TAG SEQADV 8QN0 MET B 198 UNP P34913 INITIATING METHIONINE SEQADV 8QN0 GLY B 199 UNP P34913 EXPRESSION TAG SEQADV 8QN0 SER B 200 UNP P34913 EXPRESSION TAG SEQADV 8QN0 SER B 201 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS B 202 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS B 203 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS B 204 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS B 205 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS B 206 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS B 207 UNP P34913 EXPRESSION TAG SEQADV 8QN0 SER B 208 UNP P34913 EXPRESSION TAG SEQADV 8QN0 SER B 209 UNP P34913 EXPRESSION TAG SEQADV 8QN0 GLY B 210 UNP P34913 EXPRESSION TAG SEQADV 8QN0 LEU B 211 UNP P34913 EXPRESSION TAG SEQADV 8QN0 VAL B 212 UNP P34913 EXPRESSION TAG SEQADV 8QN0 PRO B 213 UNP P34913 EXPRESSION TAG SEQADV 8QN0 ARG B 214 UNP P34913 EXPRESSION TAG SEQADV 8QN0 GLY B 215 UNP P34913 EXPRESSION TAG SEQADV 8QN0 SER B 216 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS B 217 UNP P34913 EXPRESSION TAG SEQADV 8QN0 MET B 218 UNP P34913 EXPRESSION TAG SEQADV 8QN0 ALA B 219 UNP P34913 EXPRESSION TAG SEQADV 8QN0 SER B 220 UNP P34913 EXPRESSION TAG SEQADV 8QN0 MET B 221 UNP P34913 EXPRESSION TAG SEQADV 8QN0 LEU B 556 UNP P34913 EXPRESSION TAG SEQADV 8QN0 LEU B 557 UNP P34913 EXPRESSION TAG SEQADV 8QN0 GLU B 558 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS B 559 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS B 560 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS B 561 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS B 562 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS B 563 UNP P34913 EXPRESSION TAG SEQADV 8QN0 HIS B 564 UNP P34913 EXPRESSION TAG SEQRES 1 A 367 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 367 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET LEU ASN SEQRES 3 A 367 THR PRO ALA PRO LEU PRO THR SER CYS ASN PRO SER ASP SEQRES 4 A 367 MET SER HIS GLY TYR VAL THR VAL LYS PRO ARG VAL ARG SEQRES 5 A 367 LEU HIS PHE VAL GLU LEU GLY SER GLY PRO ALA VAL CYS SEQRES 6 A 367 LEU CYS HIS GLY PHE PRO GLU SER TRP TYR SER TRP ARG SEQRES 7 A 367 TYR GLN ILE PRO ALA LEU ALA GLN ALA GLY TYR ARG VAL SEQRES 8 A 367 LEU ALA MET ASP MET LYS GLY TYR GLY GLU SER SER ALA SEQRES 9 A 367 PRO PRO GLU ILE GLU GLU TYR CYS MET GLU VAL LEU CYS SEQRES 10 A 367 LYS GLU MET VAL THR PHE LEU ASP LYS LEU GLY LEU SER SEQRES 11 A 367 GLN ALA VAL PHE ILE GLY HIS ASP TRP GLY GLY MET LEU SEQRES 12 A 367 VAL TRP TYR MET ALA LEU PHE TYR PRO GLU ARG VAL ARG SEQRES 13 A 367 ALA VAL ALA SER LEU ASN THR PRO PHE ILE PRO ALA ASN SEQRES 14 A 367 PRO ASN MET SER PRO LEU GLU SER ILE LYS ALA ASN PRO SEQRES 15 A 367 VAL PHE ASP TYR GLN LEU TYR PHE GLN GLU PRO GLY VAL SEQRES 16 A 367 ALA GLU ALA GLU LEU GLU GLN ASN LEU SER ARG THR PHE SEQRES 17 A 367 LYS SER LEU PHE ARG ALA SER ASP GLU SER VAL LEU SER SEQRES 18 A 367 MET HIS LYS VAL CYS GLU ALA GLY GLY LEU PHE VAL ASN SEQRES 19 A 367 SER PRO GLU GLU PRO SER LEU SER ARG MET VAL THR GLU SEQRES 20 A 367 GLU GLU ILE GLN PHE TYR VAL GLN GLN PHE LYS LYS SER SEQRES 21 A 367 GLY PHE ARG GLY PRO LEU ASN TRP TYR ARG ASN MET GLU SEQRES 22 A 367 ARG ASN TRP LYS TRP ALA CYS LYS SER LEU GLY ARG LYS SEQRES 23 A 367 ILE LEU ILE PRO ALA LEU MET VAL THR ALA GLU LYS ASP SEQRES 24 A 367 PHE VAL LEU VAL PRO GLN MET SER GLN HIS MET GLU ASP SEQRES 25 A 367 TRP ILE PRO HIS LEU LYS ARG GLY HIS ILE GLU ASP CYS SEQRES 26 A 367 GLY HIS TRP THR GLN MET ASP LYS PRO THR GLU VAL ASN SEQRES 27 A 367 GLN ILE LEU ILE LYS TRP LEU ASP SER ASP ALA ARG ASN SEQRES 28 A 367 PRO PRO VAL VAL SER LYS MET LEU LEU GLU HIS HIS HIS SEQRES 29 A 367 HIS HIS HIS SEQRES 1 B 367 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 367 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET LEU ASN SEQRES 3 B 367 THR PRO ALA PRO LEU PRO THR SER CYS ASN PRO SER ASP SEQRES 4 B 367 MET SER HIS GLY TYR VAL THR VAL LYS PRO ARG VAL ARG SEQRES 5 B 367 LEU HIS PHE VAL GLU LEU GLY SER GLY PRO ALA VAL CYS SEQRES 6 B 367 LEU CYS HIS GLY PHE PRO GLU SER TRP TYR SER TRP ARG SEQRES 7 B 367 TYR GLN ILE PRO ALA LEU ALA GLN ALA GLY TYR ARG VAL SEQRES 8 B 367 LEU ALA MET ASP MET LYS GLY TYR GLY GLU SER SER ALA SEQRES 9 B 367 PRO PRO GLU ILE GLU GLU TYR CYS MET GLU VAL LEU CYS SEQRES 10 B 367 LYS GLU MET VAL THR PHE LEU ASP LYS LEU GLY LEU SER SEQRES 11 B 367 GLN ALA VAL PHE ILE GLY HIS ASP TRP GLY GLY MET LEU SEQRES 12 B 367 VAL TRP TYR MET ALA LEU PHE TYR PRO GLU ARG VAL ARG SEQRES 13 B 367 ALA VAL ALA SER LEU ASN THR PRO PHE ILE PRO ALA ASN SEQRES 14 B 367 PRO ASN MET SER PRO LEU GLU SER ILE LYS ALA ASN PRO SEQRES 15 B 367 VAL PHE ASP TYR GLN LEU TYR PHE GLN GLU PRO GLY VAL SEQRES 16 B 367 ALA GLU ALA GLU LEU GLU GLN ASN LEU SER ARG THR PHE SEQRES 17 B 367 LYS SER LEU PHE ARG ALA SER ASP GLU SER VAL LEU SER SEQRES 18 B 367 MET HIS LYS VAL CYS GLU ALA GLY GLY LEU PHE VAL ASN SEQRES 19 B 367 SER PRO GLU GLU PRO SER LEU SER ARG MET VAL THR GLU SEQRES 20 B 367 GLU GLU ILE GLN PHE TYR VAL GLN GLN PHE LYS LYS SER SEQRES 21 B 367 GLY PHE ARG GLY PRO LEU ASN TRP TYR ARG ASN MET GLU SEQRES 22 B 367 ARG ASN TRP LYS TRP ALA CYS LYS SER LEU GLY ARG LYS SEQRES 23 B 367 ILE LEU ILE PRO ALA LEU MET VAL THR ALA GLU LYS ASP SEQRES 24 B 367 PHE VAL LEU VAL PRO GLN MET SER GLN HIS MET GLU ASP SEQRES 25 B 367 TRP ILE PRO HIS LEU LYS ARG GLY HIS ILE GLU ASP CYS SEQRES 26 B 367 GLY HIS TRP THR GLN MET ASP LYS PRO THR GLU VAL ASN SEQRES 27 B 367 GLN ILE LEU ILE LYS TRP LEU ASP SER ASP ALA ARG ASN SEQRES 28 B 367 PRO PRO VAL VAL SER LYS MET LEU LEU GLU HIS HIS HIS SEQRES 29 B 367 HIS HIS HIS HET WJ5 A 601 30 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET WJ5 B 601 30 HET EDO B 602 4 HET EDO B 603 4 HET EDO B 604 4 HETNAM WJ5 (3~{A}~{R},6~{A}~{S})-~{N}-[(2,4-DICHLOROPHENYL) HETNAM 2 WJ5 METHYL]-5-(4-METHYLPHENYL)SULFONYL-1,3,3~{A},4,6, HETNAM 3 WJ5 6~{A}-HEXAHYDROPYRROLO[3,4-C]PYRROLE-2-CARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN WJ5 1''-3'GC(ETHENO)ADPR HETSYN EDO ETHYLENE GLYCOL FORMUL 3 WJ5 2(C21 H23 CL2 N3 O3 S) FORMUL 4 EDO 6(C2 H6 O2) FORMUL 11 HOH *449(H2 O) HELIX 1 AA1 ASN A 233 MET A 237 5 5 HELIX 2 AA2 SER A 270 ARG A 275 5 6 HELIX 3 AA3 GLN A 277 ALA A 284 1 8 HELIX 4 AA4 GLU A 304 TYR A 308 5 5 HELIX 5 AA5 CYS A 309 GLY A 325 1 17 HELIX 6 AA6 ASP A 335 TYR A 348 1 14 HELIX 7 AA7 SER A 370 ALA A 377 1 8 HELIX 8 AA8 ASN A 378 PHE A 381 5 4 HELIX 9 AA9 ASP A 382 PHE A 387 1 6 HELIX 10 AB1 GLY A 391 GLN A 399 1 9 HELIX 11 AB2 ASN A 400 PHE A 409 1 10 HELIX 12 AB3 ALA A 411 SER A 415 5 5 HELIX 13 AB4 LYS A 421 GLY A 426 1 6 HELIX 14 AB5 THR A 443 LYS A 455 1 13 HELIX 15 AB6 PHE A 459 TRP A 465 1 7 HELIX 16 AB7 ASN A 468 LYS A 478 1 11 HELIX 17 AB8 VAL A 500 GLN A 505 5 6 HELIX 18 AB9 HIS A 506 TRP A 510 5 5 HELIX 19 AC1 TRP A 525 LYS A 530 1 6 HELIX 20 AC2 LYS A 530 ALA A 546 1 17 HELIX 21 AC3 ASN B 233 MET B 237 5 5 HELIX 22 AC4 SER B 270 ARG B 275 5 6 HELIX 23 AC5 TYR B 276 ALA B 284 1 9 HELIX 24 AC6 GLU B 304 TYR B 308 5 5 HELIX 25 AC7 CYS B 309 GLY B 325 1 17 HELIX 26 AC8 ASP B 335 TYR B 348 1 14 HELIX 27 AC9 SER B 370 ILE B 375 1 6 HELIX 28 AD1 ASP B 382 PHE B 387 1 6 HELIX 29 AD2 GLY B 391 ASN B 400 1 10 HELIX 30 AD3 ASN B 400 PHE B 409 1 10 HELIX 31 AD4 ALA B 411 SER B 415 5 5 HELIX 32 AD5 LYS B 421 GLY B 426 1 6 HELIX 33 AD6 THR B 443 LYS B 455 1 13 HELIX 34 AD7 PHE B 459 TRP B 465 1 7 HELIX 35 AD8 ASN B 468 LYS B 478 1 11 HELIX 36 AD9 VAL B 500 GLN B 505 5 6 HELIX 37 AE1 HIS B 506 TRP B 510 5 5 HELIX 38 AE2 TRP B 525 LYS B 530 1 6 HELIX 39 AE3 LYS B 530 ASP B 545 1 16 SHEET 1 AA116 LEU A 514 ILE A 519 0 SHEET 2 AA116 ALA A 488 ALA A 493 1 N ALA A 488 O LYS A 515 SHEET 3 AA116 VAL A 352 LEU A 358 1 N SER A 357 O VAL A 491 SHEET 4 AA116 ALA A 329 HIS A 334 1 N GLY A 333 O LEU A 358 SHEET 5 AA116 ALA A 260 CYS A 264 1 N CYS A 262 O VAL A 330 SHEET 6 AA116 ARG A 287 MET A 291 1 O LEU A 289 N VAL A 261 SHEET 7 AA116 VAL A 248 LEU A 255 -1 N LEU A 255 O VAL A 288 SHEET 8 AA116 SER A 238 LYS A 245 -1 N GLY A 240 O PHE A 252 SHEET 9 AA116 SER B 238 LYS B 245 -1 O HIS B 239 N TYR A 241 SHEET 10 AA116 VAL B 248 LEU B 255 -1 O PHE B 252 N GLY B 240 SHEET 11 AA116 ARG B 287 MET B 291 -1 O VAL B 288 N LEU B 255 SHEET 12 AA116 ALA B 260 CYS B 264 1 N VAL B 261 O LEU B 289 SHEET 13 AA116 ALA B 329 HIS B 334 1 O VAL B 330 N CYS B 262 SHEET 14 AA116 VAL B 352 LEU B 358 1 O LEU B 358 N GLY B 333 SHEET 15 AA116 ALA B 488 ALA B 493 1 O VAL B 491 N SER B 357 SHEET 16 AA116 LEU B 514 ILE B 519 1 O LYS B 515 N ALA B 488 CISPEP 1 PHE A 267 PRO A 268 0 -15.18 CISPEP 2 PHE B 267 PRO B 268 0 -11.02 CRYST1 47.332 80.478 90.038 90.00 92.14 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021127 0.000000 0.000789 0.00000 SCALE2 0.000000 0.012426 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011114 0.00000