HEADER BIOSYNTHETIC PROTEIN 26-SEP-23 8QNF TITLE CRYSTAL STRUCTURE OF THE CONDENSATION DOMAIN TOMBC FROM THE TOMAYMYCIN TITLE 2 NON-RIBOSOMAL PEPTIDE SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONDENSATION DOMAIN TOMBC FROM THE TOMAYMYCIN NON-RIBOSOMAL COMPND 3 PEPTIDE SYNTHETASE; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: TOMBC SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES REGENSIS; SOURCE 3 ORGANISM_TAXID: 68263; SOURCE 4 VARIANT: FH6421; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NON-RIBOSOMAL PEPTIDE SYNTHETASE, TOMAYMYCIN, CONDENSATION, KEYWDS 2 BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.KARANTH,S.SCHMELZ,J.KIRKPATRICK,J.KRAUSZE,A.SCRIMA,T.CARLOMAGNO REVDAT 2 03-JUL-24 8QNF 1 JRNL REVDAT 1 26-JUN-24 8QNF 0 JRNL AUTH M.N.KARANTH,J.P.KIRKPATRICK,J.KRAUSZE,S.SCHMELZ,A.SCRIMA, JRNL AUTH 2 T.CARLOMAGNO JRNL TITL THE SPECIFICITY OF INTERMODULAR RECOGNITION IN A JRNL TITL 2 PROTOTYPICAL NONRIBOSOMAL PEPTIDE SYNTHETASE DEPENDS ON AN JRNL TITL 3 ADAPTOR DOMAIN. JRNL REF SCI ADV V. 10 M9404 2024 JRNL REFN ESSN 2375-2548 JRNL PMID 38896613 JRNL DOI 10.1126/SCIADV.ADM9404 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.4 REMARK 3 NUMBER OF REFLECTIONS : 81324 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9400 - 5.0500 0.99 3228 171 0.1863 0.1937 REMARK 3 2 5.0400 - 4.0100 0.99 3159 166 0.1302 0.1561 REMARK 3 3 4.0100 - 3.5100 0.99 3140 165 0.1367 0.1556 REMARK 3 4 3.5100 - 3.1900 1.00 3140 165 0.1636 0.1724 REMARK 3 5 3.1900 - 2.9600 0.99 3115 164 0.1804 0.2020 REMARK 3 6 2.9600 - 2.7900 0.98 3077 162 0.1863 0.1963 REMARK 3 7 2.7900 - 2.6500 0.99 3105 164 0.1821 0.2282 REMARK 3 8 2.6500 - 2.5300 0.99 3089 162 0.1865 0.1930 REMARK 3 9 2.5300 - 2.4400 0.99 3071 162 0.1799 0.1886 REMARK 3 10 2.4400 - 2.3500 0.99 3095 163 0.1763 0.1998 REMARK 3 11 2.3500 - 2.2800 0.99 3077 162 0.1732 0.2111 REMARK 3 12 2.2800 - 2.2100 0.97 3037 160 0.1781 0.2028 REMARK 3 13 2.2100 - 2.1600 0.99 3075 161 0.1811 0.2278 REMARK 3 14 2.1600 - 2.1000 0.99 3073 162 0.1888 0.2087 REMARK 3 15 2.1000 - 2.0600 0.98 3046 161 0.2086 0.2416 REMARK 3 16 2.0600 - 2.0100 0.99 3039 159 0.2039 0.2158 REMARK 3 17 2.0100 - 1.9700 0.98 3068 162 0.2188 0.2509 REMARK 3 18 1.9700 - 1.9300 0.98 3055 161 0.2277 0.2236 REMARK 3 19 1.9300 - 1.9000 0.98 3020 159 0.2423 0.2903 REMARK 3 20 1.9000 - 1.8700 0.94 2918 153 0.2543 0.2269 REMARK 3 21 1.8700 - 1.8400 0.87 2711 143 0.2906 0.3275 REMARK 3 22 1.8400 - 1.8100 0.80 2498 131 0.3043 0.3176 REMARK 3 23 1.8100 - 1.7800 0.73 2247 119 0.3173 0.3402 REMARK 3 24 1.7800 - 1.7600 0.66 2029 106 0.2887 0.2979 REMARK 3 25 1.7600 - 1.7300 0.59 1823 96 0.2878 0.3089 REMARK 3 26 1.7300 - 1.7100 0.50 1547 82 0.2886 0.3157 REMARK 3 27 1.7100 - 1.6900 0.42 1300 68 0.2814 0.3386 REMARK 3 28 1.6900 - 1.6700 0.32 973 52 0.2772 0.2597 REMARK 3 29 1.6700 - 1.6500 0.16 502 26 0.3097 0.3344 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.173 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.568 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3891 REMARK 3 ANGLE : 1.418 5314 REMARK 3 CHIRALITY : 0.076 583 REMARK 3 PLANARITY : 0.014 731 REMARK 3 DIHEDRAL : 6.503 576 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QNF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292133327. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976250 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81329 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 19.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (STORED IN 50MM KPI, 150 MM REMARK 280 NACL, PH 7.0) CRYSTALLISED AT 30MG/ML AT 4 DEGC IN 100 MM TRIS REMARK 280 PH 8.5, 3.5 M NAFORMATE 25% GLYCEROL USED AS CRYOPROTECTANT., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 80.03000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.95000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 80.03000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.95000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 80.03000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.95000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 80.03000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.95000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 60.82500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 81.95000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 60.82500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 81.95000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 60.82500 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 81.95000 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 60.82500 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 81.95000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 60.82500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 80.03000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 60.82500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 80.03000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 60.82500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 80.03000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 60.82500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 80.03000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 887 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 MET A -1 REMARK 465 LEU A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 LEU A 5 REMARK 465 ARG A 6 REMARK 465 THR A 7 REMARK 465 THR A 8 REMARK 465 VAL A 9 REMARK 465 LEU A 10 REMARK 465 ASP A 11 REMARK 465 LEU A 12 REMARK 465 ALA A 13 REMARK 465 ARG A 14 REMARK 465 THR A 15 REMARK 465 THR A 16 REMARK 465 LEU A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 ALA A 20 REMARK 465 ASP A 21 REMARK 465 LEU A 22 REMARK 465 THR A 23 REMARK 465 ALA A 24 REMARK 465 HIS A 25 REMARK 465 GLU A 26 REMARK 465 PRO A 27 REMARK 465 LEU A 28 REMARK 465 ALA A 29 REMARK 465 ASP A 30 REMARK 465 ARG A 31 REMARK 465 CYS A 32 REMARK 465 GLU A 33 REMARK 465 HIS A 34 REMARK 465 PRO A 35 REMARK 465 ALA A 36 REMARK 465 LEU A 37 REMARK 465 LEU A 38 REMARK 465 ASP A 39 REMARK 465 ASP A 40 REMARK 465 LEU A 41 REMARK 465 ALA A 42 REMARK 465 THR A 43 REMARK 465 THR A 44 REMARK 465 LEU A 45 REMARK 465 THR A 46 REMARK 465 ALA A 47 REMARK 465 VAL A 48 REMARK 465 PHE A 49 REMARK 465 ALA A 50 REMARK 465 VAL A 51 REMARK 465 GLU A 52 REMARK 465 ILE A 53 REMARK 465 THR A 54 REMARK 465 GLY A 55 REMARK 465 ALA A 56 REMARK 465 ASP A 57 REMARK 465 LEU A 58 REMARK 465 ALA A 59 REMARK 465 ALA A 60 REMARK 465 GLY A 61 REMARK 465 ALA A 62 REMARK 465 THR A 63 REMARK 465 VAL A 64 REMARK 465 ALA A 65 REMARK 465 ASP A 66 REMARK 465 VAL A 67 REMARK 465 ALA A 68 REMARK 465 ALA A 69 REMARK 465 ARG A 70 REMARK 465 MET A 71 REMARK 465 ASP A 72 REMARK 465 ASP A 73 REMARK 465 ARG A 74 REMARK 465 ARG A 75 REMARK 465 ASP A 76 REMARK 465 ALA A 77 REMARK 465 PRO A 78 REMARK 465 ARG A 79 REMARK 465 GLN A 528 REMARK 465 GLU A 529 REMARK 465 ARG A 530 REMARK 465 ARG A 531 REMARK 465 SER A 532 REMARK 465 VAL A 533 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 109 CG CD OE1 NE2 REMARK 470 TYR A 110 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 165 CD NE CZ NH1 NH2 REMARK 470 ARG A 427 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 431 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 432 OG1 CG2 REMARK 470 ARG A 448 CD NE CZ NH1 NH2 REMARK 470 GLU A 523 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 236 OE1 GLU A 373 1.45 REMARK 500 HZ3 LYS A 181 O HOH A 701 1.53 REMARK 500 H ASP A 477 O GLY A 480 1.53 REMARK 500 OD1 ASP A 281 HH22 ARG A 422 1.54 REMARK 500 O HOH A 1021 O HOH A 1056 1.94 REMARK 500 NZ LYS A 181 O HOH A 701 1.99 REMARK 500 OD1 ASN A 192 O HOH A 702 2.08 REMARK 500 OD1 ASP A 243 O HOH A 703 2.11 REMARK 500 O ALA A 414 O HOH A 704 2.15 REMARK 500 O HOH A 735 O HOH A 1021 2.16 REMARK 500 OD1 ASP A 240 O HOH A 705 2.16 REMARK 500 OG SER A 471 O1 FMT A 610 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 235 CA - CB - CG ANGL. DEV. = -15.5 DEGREES REMARK 500 ASP A 367 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 LEU A 470 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 91 37.14 -96.03 REMARK 500 TYR A 110 47.91 -92.69 REMARK 500 PRO A 126 38.45 -90.75 REMARK 500 PRO A 211 174.40 -56.29 REMARK 500 ASP A 295 61.19 -117.92 REMARK 500 ARG A 366 41.98 -89.17 REMARK 500 ARG A 366 44.02 -89.17 REMARK 500 PHE A 378 55.37 -111.54 REMARK 500 PHE A 378 55.56 -111.54 REMARK 500 PHE A 378 54.19 -111.54 REMARK 500 GLN A 424 67.79 39.58 REMARK 500 LEU A 434 -45.85 70.79 REMARK 500 ASP A 477 -169.20 -113.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 614 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 173 OE2 REMARK 620 2 LEU A 186 O 135.0 REMARK 620 3 THR A 206 OG1 78.6 126.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 620 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 176 O REMARK 620 2 ARG A 176 O 11.7 REMARK 620 3 GLU A 494 OE1 91.6 98.3 REMARK 620 4 HOH A 935 O 89.5 96.1 2.2 REMARK 620 5 HOH A 942 O 85.4 91.0 9.2 7.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 616 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 227 OD2 REMARK 620 2 SER A 364 OG 148.8 REMARK 620 3 PHE A 378 O 76.1 77.4 REMARK 620 4 HOH A 966 O 93.4 117.2 136.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 617 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 288 O REMARK 620 2 ASP A 389 OD2 130.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 619 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 295 O REMARK 620 2 ASP A 295 OD2 78.5 REMARK 620 3 THR A 352 O 85.8 100.2 REMARK 620 4 HOH A 861 O 103.6 177.9 80.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 622 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 306 O REMARK 620 2 HOH A 824 O 134.0 REMARK 620 3 HOH A 857 O 98.3 88.8 REMARK 620 4 HOH A1018 O 88.5 137.4 81.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 621 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 372 O REMARK 620 2 ASP A 445 OD2 88.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 618 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 417 OD1 REMARK 620 2 ASP A 417 OD2 81.6 REMARK 620 3 HOH A 849 O 147.1 130.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 615 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 457 O REMARK 620 2 GLU A 459 OE2 114.5 REMARK 620 N 1 DBREF 8QNF A -3 533 PDB 8QNF 8QNF -3 533 SEQRES 1 A 537 GLY PRO MET LEU MET ASN SER PRO LEU ARG THR THR VAL SEQRES 2 A 537 LEU ASP LEU ALA ARG THR THR LEU GLY SER ALA ASP LEU SEQRES 3 A 537 THR ALA HIS GLU PRO LEU ALA ASP ARG CYS GLU HIS PRO SEQRES 4 A 537 ALA LEU LEU ASP ASP LEU ALA THR THR LEU THR ALA VAL SEQRES 5 A 537 PHE ALA VAL GLU ILE THR GLY ALA ASP LEU ALA ALA GLY SEQRES 6 A 537 ALA THR VAL ALA ASP VAL ALA ALA ARG MET ASP ASP ARG SEQRES 7 A 537 ARG ASP ALA PRO ARG ILE PRO GLU LEU ARG ALA GLY LEU SEQRES 8 A 537 ALA PRO ARG ASP GLY ARG ALA VAL GLU ALA SER PHE GLY SEQRES 9 A 537 GLN SER GLY ILE TRP LEU ILE ASP GLN TYR LEU PRO ASN SEQRES 10 A 537 PRO ALA ALA TYR ASN GLY PRO PHE PHE VAL ARG LEU PRO SEQRES 11 A 537 PHE SER ALA ASP PRO ASP ARG LEU HIS ALA ALA VAL ARG SEQRES 12 A 537 GLY VAL LEU ARG ARG GLN GLU VAL LEU ARG THR THR TYR SEQRES 13 A 537 ALA LEU SER ASP GLY THR LEU ARG GLN ASN VAL SER ARG SEQRES 14 A 537 ASP ASP ASP ALA VAL VAL PHE GLU VAL ALA ARG TYR GLY SEQRES 15 A 537 ASP ASP LYS GLU LEU ASP ALA LEU VAL HIS ARG VAL ALA SEQRES 16 A 537 ASN LEU ARG LEU ASP LEU ALA ARG GLY PRO VAL ILE ALA SEQRES 17 A 537 VAL THR CYS ALA LEU GLY PRO ALA ASN ARG SER ALA VAL SEQRES 18 A 537 ILE CYS ASN ILE HIS HIS ILE ALA SER ASP ALA ALA SER SEQRES 19 A 537 ALA GLY VAL PHE LEU ARG GLU LEU LEU ASP ALA TYR ASP SEQRES 20 A 537 ARG LEU GLY ARG GLY LEU PRO VAL GLU ALA ASP PRO LEU SEQRES 21 A 537 ARG PRO THR TYR GLY ASP PHE SER GLN TRP TYR ARG GLU SEQRES 22 A 537 LEU MET ASN PRO GLU ALA LEU THR ARG SER LEU ASP HIS SEQRES 23 A 537 PHE ALA ALA ARG LEU ALA GLY GLU LEU PRO VAL LEU ASP SEQRES 24 A 537 LEU PRO THR ASP ARG PRO ARG PRO PRO VAL LYS GLN HIS SEQRES 25 A 537 ARG GLY GLY THR LEU PRO LEU HIS LEU PRO ALA ALA ALA SEQRES 26 A 537 ALA ASP ASP PHE GLU ALA LEU ALA ARG THR GLU GLY VAL SEQRES 27 A 537 THR LEU PHE MET ALA LEU VAL ALA ALA TYR ALA VAL PHE SEQRES 28 A 537 LEU SER ARG HIS THR GLY GLN ARG ARG VAL LEU ILE GLY SEQRES 29 A 537 SER PRO VAL SER LEU ARG ASP ASP PRO ALA THR HIS GLU SEQRES 30 A 537 LEU ILE GLY TYR PHE VAL ASN LEU VAL VAL LEU GLN GLN SEQRES 31 A 537 GLU ILE ASP ASP ARG MET THR VAL ARG ASP VAL LEU ARG SEQRES 32 A 537 ARG ALA ARG GLU GLU VAL SER GLU ALA LEU ARG HIS LYS SEQRES 33 A 537 TRP ALA PRO PHE ASP LYS VAL VAL GLU ARG LEU GLN PRO SEQRES 34 A 537 PRO ARG SER SER GLY TYR THR PRO LEU VAL GLN THR MET SEQRES 35 A 537 LEU VAL LEU THR GLN GLY ASP ALA GLY ARG ILE SER HIS SEQRES 36 A 537 ASP ASP THR GLU LEU ARG ILE GLU ARG GLY ALA ALA HIS SEQRES 37 A 537 GLY ALA LYS TYR ASP LEU SER LEU VAL PHE GLU ARG ASP SEQRES 38 A 537 SER GLU GLY LEU HIS GLY LEU ILE GLU TYR ASP ALA ASP SEQRES 39 A 537 LEU PHE ASP GLU PRO THR VAL ARG ALA MET GLY ASP ARG SEQRES 40 A 537 LEU ARG HIS LEU MET GLU GLN PHE ALA ARG ARG PRO ASP SEQRES 41 A 537 ALA PRO LEU HIS GLU LEU GLU ALA LEU GLY ALA GLN GLU SEQRES 42 A 537 ARG ARG SER VAL HET FMT A 601 4 HET FMT A 602 4 HET FMT A 603 4 HET FMT A 604 4 HET FMT A 605 4 HET FMT A 606 4 HET FMT A 607 4 HET FMT A 608 4 HET FMT A 609 4 HET FMT A 610 4 HET FMT A 611 4 HET GOL A 612 14 HET GOL A 613 13 HET NA A 614 1 HET NA A 615 1 HET NA A 616 1 HET NA A 617 1 HET NA A 618 1 HET NA A 619 1 HET NA A 620 1 HET K A 621 1 HET K A 622 1 HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM K POTASSIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FMT 11(C H2 O2) FORMUL 13 GOL 2(C3 H8 O3) FORMUL 15 NA 7(NA 1+) FORMUL 22 K 2(K 1+) FORMUL 24 HOH *360(H2 O) HELIX 1 AA1 SER A 98 ASP A 108 1 11 HELIX 2 AA2 ASP A 130 GLN A 145 1 16 HELIX 3 AA3 GLU A 146 LEU A 148 5 3 HELIX 4 AA4 ASP A 179 ASN A 192 1 14 HELIX 5 AA5 HIS A 223 SER A 226 5 4 HELIX 6 AA6 ASP A 227 ALA A 228 5 2 HELIX 7 AA7 ALA A 229 ARG A 247 1 19 HELIX 8 AA8 THR A 259 MET A 271 1 13 HELIX 9 AA9 ASN A 272 LEU A 287 1 16 HELIX 10 AB1 PRO A 318 GLU A 332 1 15 HELIX 11 AB2 THR A 335 GLY A 353 1 19 HELIX 12 AB3 ASP A 368 HIS A 372 5 5 HELIX 13 AB4 THR A 393 HIS A 411 1 19 HELIX 14 AB5 PRO A 415 GLN A 424 1 10 HELIX 15 AB6 GLN A 443 ALA A 446 5 4 HELIX 16 AB7 ASP A 493 ARG A 514 1 22 HELIX 17 AB8 PRO A 518 LEU A 522 5 5 SHEET 1 AA1 5 VAL A 171 ARG A 176 0 SHEET 2 AA1 5 ILE A 203 LEU A 209 1 O LEU A 209 N ALA A 175 SHEET 3 AA1 5 SER A 215 ILE A 221 -1 O ALA A 216 N ALA A 208 SHEET 4 AA1 5 PHE A 121 LEU A 125 -1 N PHE A 121 O CYS A 219 SHEET 5 AA1 5 GLU A 459 ARG A 460 -1 O GLU A 459 N PHE A 122 SHEET 1 AA2 2 THR A 150 SER A 155 0 SHEET 2 AA2 2 THR A 158 VAL A 163 -1 O ARG A 160 N ALA A 153 SHEET 1 AA3 4 GLY A 310 PRO A 314 0 SHEET 2 AA3 4 GLY A 480 ASP A 488 -1 O TYR A 487 N GLY A 311 SHEET 3 AA3 4 LEU A 470 ASP A 477 -1 N ASP A 477 O GLY A 480 SHEET 4 AA3 4 THR A 437 THR A 442 1 N THR A 442 O PHE A 474 SHEET 1 AA4 2 ARG A 356 SER A 364 0 SHEET 2 AA4 2 VAL A 379 GLU A 387 -1 O ASN A 380 N VAL A 363 SHEET 1 AA5 2 ARG A 448 HIS A 451 0 SHEET 2 AA5 2 THR A 454 ARG A 457 -1 O LEU A 456 N ILE A 449 LINK OE2 GLU A 173 NA NA A 614 1555 1555 2.79 LINK O AARG A 176 NA NA A 620 1555 4555 2.74 LINK O BARG A 176 NA NA A 620 1555 4555 2.55 LINK O LEU A 186 NA NA A 614 1555 1555 3.07 LINK OG1 THR A 206 NA NA A 614 1555 1555 2.80 LINK OD2 ASP A 227 NA NA A 616 1555 1555 2.76 LINK O ALA A 288 NA NA A 617 1555 11554 2.70 LINK O ASP A 295 NA NA A 619 1555 1555 2.80 LINK OD2 ASP A 295 NA NA A 619 1555 1555 2.74 LINK O LYS A 306 K K A 622 1555 1555 2.73 LINK O THR A 352 NA NA A 619 1555 1555 2.83 LINK OG SER A 364 NA NA A 616 1555 1555 2.86 LINK O HIS A 372 K K A 621 1555 1555 2.91 LINK O PHE A 378 NA NA A 616 1555 1555 3.07 LINK OD2 ASP A 389 NA NA A 617 1555 1555 2.70 LINK OD1BASP A 417 NA NA A 618 1555 1555 3.14 LINK OD2AASP A 417 NA NA A 618 1555 1555 2.08 LINK OD2 ASP A 445 K K A 621 1555 1555 2.64 LINK O ARG A 457 NA NA A 615 1555 1555 2.68 LINK OE2 GLU A 459 NA NA A 615 1555 1555 2.79 LINK OE1 GLU A 494 NA NA A 620 1555 1555 2.72 LINK NA NA A 616 O HOH A 966 1555 1555 2.82 LINK NA NA A 618 O HOH A 849 1555 1555 2.69 LINK NA NA A 619 O HOH A 861 1555 1555 2.46 LINK NA NA A 620 O HOH A 935 1555 4555 2.81 LINK NA NA A 620 O HOH A 942 1555 1555 2.92 LINK K K A 622 O HOH A 824 1555 4555 2.72 LINK K K A 622 O HOH A 857 1555 4555 2.69 LINK K K A 622 O HOH A1018 1555 4555 2.92 CISPEP 1 GLY A 200 PRO A 201 0 -7.78 CRYST1 121.650 160.060 163.900 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008220 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006248 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006101 0.00000