data_8QO3 # _entry.id 8QO3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8QO3 pdb_00008qo3 10.2210/pdb8qo3/pdb WWPDB D_1292133613 ? ? EMDB EMD-18521 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2024-03-06 ? 2 'EM metadata' 1 0 2024-03-06 ? 3 FSC 1 0 2024-03-06 ? 4 'Half map' 1 0 2024-03-06 1 5 'Half map' 1 0 2024-03-06 2 6 Image 1 0 2024-03-06 ? 7 'Primary map' 1 0 2024-03-06 ? 8 'Structure model' 1 1 2024-03-13 ? 9 FSC 1 0 2024-03-06 ? 10 'Half map' 1 0 2024-03-06 1 11 'Half map' 1 0 2024-03-06 2 12 Image 1 0 2024-03-06 ? 13 'Primary map' 1 0 2024-03-06 ? 14 'Structure model' 1 2 2024-04-24 ? 15 FSC 1 0 2024-03-06 ? 16 'Half map' 1 0 2024-03-06 1 17 'Half map' 1 0 2024-03-06 2 18 Image 1 0 2024-03-06 ? 19 'Primary map' 1 0 2024-03-06 ? 20 'Structure model' 1 3 2025-07-02 ? 21 'EM metadata' 1 1 2025-07-02 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? 8 9 FSC repository 'Initial release' ? ? 9 10 'Half map' repository 'Initial release' ? ? 10 11 'Half map' repository 'Initial release' ? ? 11 12 Image repository 'Initial release' ? ? 12 13 'Primary map' repository 'Initial release' ? ? 13 15 FSC repository 'Initial release' ? ? 14 16 'Half map' repository 'Initial release' ? ? 15 17 'Half map' repository 'Initial release' ? ? 16 18 Image repository 'Initial release' ? ? 17 19 'Primary map' repository 'Initial release' ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 8 'Structure model' 'Database references' 2 14 'Structure model' 'Database references' 3 20 'Structure model' 'Data collection' 4 20 'Structure model' 'Structure summary' 5 21 'EM metadata' 'Data processing' 6 21 'EM metadata' 'Experimental summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 8 'Structure model' citation 2 8 'Structure model' citation_author 3 14 'Structure model' citation 4 20 'Structure model' em_admin 5 20 'Structure model' em_software 6 20 'Structure model' pdbx_entry_details 7 21 'EM metadata' em_admin 8 21 'EM metadata' em_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 8 'Structure model' '_citation.pdbx_database_id_PubMed' 2 8 'Structure model' '_citation.title' 3 14 'Structure model' '_citation.journal_volume' 4 14 'Structure model' '_citation.page_first' 5 14 'Structure model' '_citation.page_last' 6 20 'Structure model' '_em_admin.last_update' 7 20 'Structure model' '_em_software.name' 8 21 'EM metadata' '_em_admin.last_update' 9 21 'EM metadata' '_em_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8QO3 _pdbx_database_status.recvd_initial_deposition_date 2023-09-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes' _pdbx_database_related.db_id EMD-18521 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email janusz@iimcb.gov.pl _pdbx_contact_author.name_first Janusz _pdbx_contact_author.name_last Bujnicki _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6633-165X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Moura, T.R.' 1 0000-0001-5492-8419 'Purta, E.' 2 0000-0003-0960-548X 'Bernat, A.' 3 0000-0002-5555-9464 'Baulin, E.' 4 0000-0003-4694-9783 'Mukherjee, S.' 5 0000-0002-4361-0103 'Bujnicki, J.M.' 6 0000-0002-6633-165X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 52 _citation.language ? _citation.page_first 3419 _citation.page_last 3432 _citation.title ;Conserved structures and dynamics in 5'-proximal regions of Betacoronavirus RNA genomes. ; _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkae144 _citation.pdbx_database_id_PubMed 38426934 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'de Moura, T.R.' 1 ? primary 'Purta, E.' 2 ? primary 'Bernat, A.' 3 ? primary 'Martin-Cuevas, E.M.' 4 ? primary 'Kurkowska, M.' 5 ? primary 'Baulin, E.F.' 6 ? primary 'Mukherjee, S.' 7 ? primary 'Nowak, J.' 8 ? primary 'Biela, A.P.' 9 ? primary 'Rawski, M.' 10 ? primary 'Glatt, S.' 11 ? primary 'Moreno-Herrero, F.' 12 ? primary 'Bujnicki, J.M.' 13 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description RoBat-CoV-SL5 _entity.formula_weight 37739.094 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AAGCUUUUGUGUCUUCAGCUUCCCUCUUCUCCUCGUGGGGUUCCGUUCCCGCGGUAGUGAGCCUGGUGUGGUUCCGCCCG CGCCAGUGAUGGAGGGUGCUUUAGGCACUAACAAGCUU ; _entity_poly.pdbx_seq_one_letter_code_can ;AAGCUUUUGUGUCUUCAGCUUCCCUCUUCUCCUCGUGGGGUUCCGUUCCCGCGGUAGUGAGCCUGGUGUGGUUCCGCCCG CGCCAGUGAUGGAGGGUGCUUUAGGCACUAACAAGCUU ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 A n 1 2 A n 1 3 G n 1 4 C n 1 5 U n 1 6 U n 1 7 U n 1 8 U n 1 9 G n 1 10 U n 1 11 G n 1 12 U n 1 13 C n 1 14 U n 1 15 U n 1 16 C n 1 17 A n 1 18 G n 1 19 C n 1 20 U n 1 21 U n 1 22 C n 1 23 C n 1 24 C n 1 25 U n 1 26 C n 1 27 U n 1 28 U n 1 29 C n 1 30 U n 1 31 C n 1 32 C n 1 33 U n 1 34 C n 1 35 G n 1 36 U n 1 37 G n 1 38 G n 1 39 G n 1 40 G n 1 41 U n 1 42 U n 1 43 C n 1 44 C n 1 45 G n 1 46 U n 1 47 U n 1 48 C n 1 49 C n 1 50 C n 1 51 G n 1 52 C n 1 53 G n 1 54 G n 1 55 U n 1 56 A n 1 57 G n 1 58 U n 1 59 G n 1 60 A n 1 61 G n 1 62 C n 1 63 C n 1 64 U n 1 65 G n 1 66 G n 1 67 U n 1 68 G n 1 69 U n 1 70 G n 1 71 G n 1 72 U n 1 73 U n 1 74 C n 1 75 C n 1 76 G n 1 77 C n 1 78 C n 1 79 C n 1 80 G n 1 81 C n 1 82 G n 1 83 C n 1 84 C n 1 85 A n 1 86 G n 1 87 U n 1 88 G n 1 89 A n 1 90 U n 1 91 G n 1 92 G n 1 93 A n 1 94 G n 1 95 G n 1 96 G n 1 97 U n 1 98 G n 1 99 C n 1 100 U n 1 101 U n 1 102 U n 1 103 A n 1 104 G n 1 105 G n 1 106 C n 1 107 A n 1 108 C n 1 109 U n 1 110 A n 1 111 A n 1 112 C n 1 113 A n 1 114 A n 1 115 G n 1 116 C n 1 117 U n 1 118 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 118 _pdbx_entity_src_syn.organism_scientific 'Rousettus bat coronavirus GCCDC1' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 2501962 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 A 1 143 143 A A A . n A 1 2 A 2 144 144 A A A . n A 1 3 G 3 145 145 G G A . n A 1 4 C 4 146 146 C C A . n A 1 5 U 5 147 147 U U A . n A 1 6 U 6 148 148 U U A . n A 1 7 U 7 149 149 U U A . n A 1 8 U 8 150 150 U U A . n A 1 9 G 9 151 151 G G A . n A 1 10 U 10 152 152 U U A . n A 1 11 G 11 153 153 G G A . n A 1 12 U 12 154 154 U U A . n A 1 13 C 13 155 155 C C A . n A 1 14 U 14 156 156 U U A . n A 1 15 U 15 157 157 U U A . n A 1 16 C 16 158 158 C C A . n A 1 17 A 17 159 159 A A A . n A 1 18 G 18 160 160 G G A . n A 1 19 C 19 161 161 C C A . n A 1 20 U 20 162 162 U U A . n A 1 21 U 21 163 163 U U A . n A 1 22 C 22 164 164 C C A . n A 1 23 C 23 165 165 C C A . n A 1 24 C 24 166 166 C C A . n A 1 25 U 25 167 167 U U A . n A 1 26 C 26 168 168 C C A . n A 1 27 U 27 169 169 U U A . n A 1 28 U 28 170 170 U U A . n A 1 29 C 29 171 171 C C A . n A 1 30 U 30 172 172 U U A . n A 1 31 C 31 173 173 C C A . n A 1 32 C 32 174 174 C C A . n A 1 33 U 33 175 175 U U A . n A 1 34 C 34 176 176 C C A . n A 1 35 G 35 177 177 G G A . n A 1 36 U 36 178 178 U U A . n A 1 37 G 37 179 179 G G A . n A 1 38 G 38 180 180 G G A . n A 1 39 G 39 181 181 G G A . n A 1 40 G 40 182 182 G G A . n A 1 41 U 41 183 183 U U A . n A 1 42 U 42 184 184 U U A . n A 1 43 C 43 185 185 C C A . n A 1 44 C 44 186 186 C C A . n A 1 45 G 45 187 187 G G A . n A 1 46 U 46 188 188 U U A . n A 1 47 U 47 189 189 U U A . n A 1 48 C 48 190 190 C C A . n A 1 49 C 49 191 191 C C A . n A 1 50 C 50 192 192 C C A . n A 1 51 G 51 193 193 G G A . n A 1 52 C 52 194 194 C C A . n A 1 53 G 53 195 195 G G A . n A 1 54 G 54 196 196 G G A . n A 1 55 U 55 197 197 U U A . n A 1 56 A 56 198 198 A A A . n A 1 57 G 57 199 199 G G A . n A 1 58 U 58 200 200 U U A . n A 1 59 G 59 201 201 G G A . n A 1 60 A 60 202 202 A A A . n A 1 61 G 61 203 203 G G A . n A 1 62 C 62 204 204 C C A . n A 1 63 C 63 205 205 C C A . n A 1 64 U 64 206 206 U U A . n A 1 65 G 65 207 207 G G A . n A 1 66 G 66 208 208 G G A . n A 1 67 U 67 209 209 U U A . n A 1 68 G 68 210 210 G G A . n A 1 69 U 69 211 211 U U A . n A 1 70 G 70 212 212 G G A . n A 1 71 G 71 213 213 G G A . n A 1 72 U 72 214 214 U U A . n A 1 73 U 73 215 215 U U A . n A 1 74 C 74 216 216 C C A . n A 1 75 C 75 217 217 C C A . n A 1 76 G 76 218 218 G G A . n A 1 77 C 77 219 219 C C A . n A 1 78 C 78 220 220 C C A . n A 1 79 C 79 221 221 C C A . n A 1 80 G 80 222 222 G G A . n A 1 81 C 81 223 223 C C A . n A 1 82 G 82 224 224 G G A . n A 1 83 C 83 225 225 C C A . n A 1 84 C 84 226 226 C C A . n A 1 85 A 85 227 227 A A A . n A 1 86 G 86 228 228 G G A . n A 1 87 U 87 229 229 U U A . n A 1 88 G 88 230 230 G G A . n A 1 89 A 89 231 231 A A A . n A 1 90 U 90 232 232 U U A . n A 1 91 G 91 233 233 G G A . n A 1 92 G 92 234 234 G G A . n A 1 93 A 93 235 235 A A A . n A 1 94 G 94 236 236 G G A . n A 1 95 G 95 237 237 G G A . n A 1 96 G 96 238 238 G G A . n A 1 97 U 97 239 239 U U A . n A 1 98 G 98 240 240 G G A . n A 1 99 C 99 241 241 C C A . n A 1 100 U 100 242 242 U U A . n A 1 101 U 101 243 243 U U A . n A 1 102 U 102 244 244 U U A . n A 1 103 A 103 245 245 A A A . n A 1 104 G 104 246 246 G G A . n A 1 105 G 105 247 247 G G A . n A 1 106 C 106 248 248 C C A . n A 1 107 A 107 249 249 A A A . n A 1 108 C 108 250 250 C C A . n A 1 109 U 109 251 251 U U A . n A 1 110 A 110 252 252 A A A . n A 1 111 A 111 253 253 A A A . n A 1 112 C 112 254 254 C C A . n A 1 113 A 113 255 255 A A A . n A 1 114 A 114 256 256 A A A . n A 1 115 G 115 257 257 G G A . n A 1 116 C 116 258 258 C C A . n A 1 117 U 117 259 259 U U A . n A 1 118 U 118 260 260 U U A . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8QO3 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8QO3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8QO3 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8QO3 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 2778 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.465 ? 4326 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 11.493 ? 1413 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.020 ? 590 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.002 ? 118 ? f_plane_restr ? ? # _struct.entry_id 8QO3 _struct.title 'Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8QO3 _struct_keywords.text 'RNA structure, 5-proximal region, Coronavirus, Cryo-EM, VIRUS' _struct_keywords.pdbx_keywords VIRUS # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code NC_030886.1 _struct_ref.pdbx_db_accession 1063656979 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AAGCUUUUGUGUCUUCAGCUUCCCUCUUCUCCUCGUGGGGUUCCGUUCCCGCGGUAGUGAGCCUGGUGUGGUUCCGCCCG CGCCAGUGAUGGAGGGUGCUUUAGGCACUAACAAGCUU ; _struct_ref.pdbx_align_begin 147 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8QO3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 118 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1063656979 _struct_ref_seq.db_align_beg 147 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 264 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 143 _struct_ref_seq.pdbx_auth_seq_align_end 260 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A A 1 N1 ? ? ? 1_555 A U 118 N3 ? ? A A 143 A U 260 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 1 N6 ? ? ? 1_555 A U 118 O4 ? ? A A 143 A U 260 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A A 2 N1 ? ? ? 1_555 A U 117 N3 ? ? A A 144 A U 259 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N6 ? ? ? 1_555 A U 117 O4 ? ? A A 144 A U 259 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 116 N3 ? ? A G 145 A C 258 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 116 O2 ? ? A G 145 A C 258 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 116 N4 ? ? A G 145 A C 258 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 115 N1 ? ? A C 146 A G 257 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 115 O6 ? ? A C 146 A G 257 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 115 N2 ? ? A C 146 A G 257 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 114 N1 ? ? A U 147 A A 256 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 114 N6 ? ? A U 147 A A 256 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 113 N1 ? ? A U 148 A A 255 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 113 N6 ? ? A U 148 A A 255 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 111 N6 ? ? A U 149 A A 253 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog16 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 111 N1 ? ? A U 150 A A 253 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog17 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 108 N4 ? ? A G 151 A C 250 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog18 hydrog ? ? A G 9 N2 ? ? ? 1_555 A U 109 O2 ? ? A G 151 A U 251 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog19 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 107 N6 ? ? A U 152 A A 249 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog20 hydrog ? ? A U 12 N3 ? ? ? 1_555 A G 105 O6 ? ? A U 154 A G 247 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog21 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 104 N1 ? ? A C 155 A G 246 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 104 O6 ? ? A C 155 A G 246 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 104 N2 ? ? A C 155 A G 246 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 16 N4 ? ? ? 1_555 A U 101 O4 ? ? A C 158 A U 243 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog25 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 100 N3 ? ? A A 159 A U 242 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 100 O4 ? ? A A 159 A U 242 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 18 N1 ? ? ? 1_555 A U 100 O2 ? ? A G 160 A U 242 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog28 hydrog ? ? A G 18 O6 ? ? ? 1_555 A U 100 N3 ? ? A G 160 A U 242 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 96 N1 ? ? A C 164 A G 238 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 96 O6 ? ? A C 164 A G 238 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 96 N2 ? ? A C 164 A G 238 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 95 N2 ? ? A C 165 A G 237 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog33 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 94 N1 ? ? A C 166 A G 236 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 94 O6 ? ? A C 166 A G 236 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 94 N2 ? ? A C 166 A G 236 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 25 N3 ? ? ? 1_555 A A 93 N1 ? ? A U 167 A A 235 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 25 O4 ? ? ? 1_555 A A 93 N6 ? ? A U 167 A A 235 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 92 N1 ? ? A C 168 A G 234 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 92 O6 ? ? A C 168 A G 234 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 92 N2 ? ? A C 168 A G 234 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 29 O2 ? ? ? 1_555 A G 61 N2 ? ? A C 171 A G 203 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog42 hydrog ? ? A U 30 N3 ? ? ? 1_555 A A 60 N1 ? ? A U 172 A A 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A U 30 O4 ? ? ? 1_555 A A 60 N6 ? ? A U 172 A A 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 31 N3 ? ? ? 1_555 A G 59 N2 ? ? A C 173 A G 201 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog45 hydrog ? ? A U 33 O2 ? ? ? 1_555 A A 56 N6 ? ? A U 175 A A 198 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog46 hydrog ? ? A C 34 N3 ? ? ? 1_555 A G 54 N1 ? ? A C 176 A G 196 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 34 N4 ? ? ? 1_555 A G 54 O6 ? ? A C 176 A G 196 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 34 O2 ? ? ? 1_555 A G 54 N2 ? ? A C 176 A G 196 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 52 N4 ? ? A G 177 A C 194 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog50 hydrog ? ? A G 38 N1 ? ? ? 1_555 A C 50 N3 ? ? A G 180 A C 192 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 38 N2 ? ? ? 1_555 A C 50 O2 ? ? A G 180 A C 192 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 38 O6 ? ? ? 1_555 A C 50 N4 ? ? A G 180 A C 192 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 39 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 181 A C 190 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog54 hydrog ? ? A U 42 N3 ? ? ? 1_555 A G 45 O6 ? ? A U 184 A G 187 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog55 hydrog ? ? A U 42 O2 ? ? ? 1_555 A G 45 N1 ? ? A U 184 A G 187 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog56 hydrog ? ? A C 63 N4 ? ? ? 1_555 A G 86 O6 ? ? A C 205 A G 228 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog57 hydrog ? ? A G 65 N1 ? ? ? 1_555 A C 84 N3 ? ? A G 207 A C 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 65 N2 ? ? ? 1_555 A C 84 O2 ? ? A G 207 A C 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 65 O6 ? ? ? 1_555 A C 84 N4 ? ? A G 207 A C 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 66 N1 ? ? ? 1_555 A C 83 N3 ? ? A G 208 A C 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 66 N2 ? ? ? 1_555 A C 83 O2 ? ? A G 208 A C 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 66 O6 ? ? ? 1_555 A C 83 N4 ? ? A G 208 A C 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 67 N3 ? ? ? 1_555 A G 82 O6 ? ? A U 209 A G 224 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog64 hydrog ? ? A G 68 N1 ? ? ? 1_555 A C 81 N3 ? ? A G 210 A C 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 68 N2 ? ? ? 1_555 A C 81 O2 ? ? A G 210 A C 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 68 O6 ? ? ? 1_555 A C 81 N4 ? ? A G 210 A C 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A U 69 N3 ? ? ? 1_555 A G 80 O6 ? ? A U 211 A G 222 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog68 hydrog ? ? A U 69 O2 ? ? ? 1_555 A G 80 N1 ? ? A U 211 A G 222 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog69 hydrog ? ? A G 70 O6 ? ? ? 1_555 A C 79 N4 ? ? A G 212 A C 221 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog70 hydrog ? ? A G 71 N1 ? ? ? 1_555 A C 79 N3 ? ? A G 213 A C 221 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 71 N2 ? ? ? 1_555 A C 79 O2 ? ? A G 213 A C 221 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 71 O6 ? ? ? 1_555 A C 79 N4 ? ? A G 213 A C 221 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A U 72 O4 ? ? ? 1_555 A G 76 N2 ? ? A U 214 A G 218 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog74 hydrog ? ? A U 72 O4 ? ? ? 1_555 A C 78 N4 ? ? A U 214 A C 220 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 8QO3 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8QO3 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8QO3 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 6.6 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 29234 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '20 mM HEPES pH 7.5, 50 mM KCl, 50 mM NaCl' _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type VIRUS _em_entity_assembly.name 'Rousettus bat coronavirus GCCDC1' _em_entity_assembly.details 'in vitro transcription' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8QO3 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 900 _em_imaging.nominal_defocus_max 2100 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.virus_type VIROID _em_virus_entity.virus_isolate OTHER _em_virus_entity.entity_assembly_id 1 _em_virus_entity.enveloped YES _em_virus_entity.empty YES _em_virus_entity.details ? # _em_vitrification.entry_id 8QO3 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 90 _em_vitrification.temp ? _em_vitrification.chamber_temperature 298 _em_vitrification.instrument 'FEI VITROBOT MARK II' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8QO3 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # _em_admin.current_status REL _em_admin.deposition_date 2023-09-28 _em_admin.deposition_site PDBE _em_admin.entry_id 8QO3 _em_admin.last_update 2025-07-02 _em_admin.map_release_date 2024-03-06 _em_admin.title 'Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 20 mM ? 1 Hepes 1 50 mM NaCl 2 'sodium chloride' 1 50 mM KCl 3 'Potassium chloride' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 2501962 _em_entity_assembly_naturalsource.organism 'Rousettus bat coronavirus GCCDC1' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 32630 _em_entity_assembly_recombinant.organism 'synthetic construct' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 4 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC 4 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? PHENIX ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC 4 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? cryoSPARC 4 CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration 0.9 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 32630 _em_virus_natural_host.organism 'synthetic construct' _em_virus_natural_host.strain ? # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8QO3 'double helix' 8QO3 'a-form double helix' 8QO3 'hairpin loop' 8QO3 'bulge loop' 8QO3 'mismatched base pair' 8QO3 'internal loop' 8QO3 'triple helix' 8QO3 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 1 1_555 A U 118 1_555 -1.359 -0.182 -0.591 1.305 -1.429 -0.592 1 A_A143:U260_A A 143 ? A 260 ? 20 1 1 A A 2 1_555 A U 117 1_555 -0.024 -0.039 -0.577 -2.728 -4.723 -1.550 2 A_A144:U259_A A 144 ? A 259 ? 20 1 1 A G 3 1_555 A C 116 1_555 0.028 -0.122 -0.793 -5.669 -6.091 -2.721 3 A_G145:C258_A A 145 ? A 258 ? 19 1 1 A C 4 1_555 A G 115 1_555 -0.121 -0.067 -0.755 4.614 -5.535 -2.723 4 A_C146:G257_A A 146 ? A 257 ? 19 1 1 A U 5 1_555 A A 114 1_555 0.045 -0.004 -0.511 3.760 -5.143 -0.983 5 A_U147:A256_A A 147 ? A 256 ? 20 1 1 A U 6 1_555 A A 113 1_555 0.310 -0.271 -0.111 4.434 -5.904 2.274 6 A_U148:A255_A A 148 ? A 255 ? 20 1 1 A U 8 1_555 A A 111 1_555 0.950 -0.303 2.000 -2.549 9.367 23.350 7 A_U150:A253_A A 150 ? A 253 ? ? 1 1 A G 9 1_555 A C 108 1_555 0.847 0.521 -0.987 -6.901 -9.981 -21.996 8 A_G151:C250_A A 151 ? A 250 ? ? 1 1 A U 10 1_555 A A 107 1_555 -0.737 0.760 -0.704 1.058 -8.483 -13.500 9 A_U152:A249_A A 152 ? A 249 ? ? ? 1 A U 12 1_555 A G 105 1_555 0.222 0.323 -0.070 4.818 -6.795 -16.858 10 A_U154:G247_A A 154 ? A 247 ? ? ? 1 A C 13 1_555 A G 104 1_555 0.749 -0.246 -0.073 7.355 -9.168 -15.441 11 A_C155:G246_A A 155 ? A 246 ? 19 1 1 A C 16 1_555 A U 101 1_555 -0.583 -0.668 -0.504 -3.049 -8.330 3.208 12 A_C158:U243_A A 158 ? A 243 ? ? ? 1 A A 17 1_555 A U 100 1_555 -1.271 0.091 -0.693 -5.629 -3.428 -1.837 13 A_A159:U242_A A 159 ? A 242 ? 20 1 1 A C 22 1_555 A G 96 1_555 0.117 -0.484 0.621 6.057 -11.849 -6.592 14 A_C164:G238_A A 164 ? A 238 ? 19 1 1 A C 23 1_555 A G 95 1_555 0.408 0.862 -0.450 5.131 -9.115 6.686 15 A_C165:G237_A A 165 ? A 237 ? ? ? 1 A C 24 1_555 A G 94 1_555 0.495 0.299 -0.093 1.689 -5.956 -1.514 16 A_C166:G236_A A 166 ? A 236 ? 19 1 1 A U 25 1_555 A A 93 1_555 0.349 -0.112 0.252 1.442 -4.590 -12.706 17 A_U167:A235_A A 167 ? A 235 ? 20 1 1 A C 26 1_555 A G 92 1_555 0.732 -0.581 0.527 9.782 -2.340 -2.197 18 A_C168:G234_A A 168 ? A 234 ? 19 1 1 A C 29 1_555 A G 61 1_555 0.256 0.498 0.991 22.910 -21.759 5.966 19 A_C171:G203_A A 171 ? A 203 ? ? 1 1 A U 30 1_555 A A 60 1_555 -0.065 -0.290 0.722 7.452 -33.840 4.488 20 A_U172:A202_A A 172 ? A 202 ? 20 1 1 A C 31 1_555 A G 59 1_555 -2.029 0.438 1.143 -7.429 -37.191 4.760 21 A_C173:G201_A A 173 ? A 201 ? ? 1 1 A U 33 1_555 A A 56 1_555 5.832 -2.426 0.370 -22.436 -21.696 -24.910 22 A_U175:A198_A A 175 ? A 198 ? ? ? 1 A C 34 1_555 A G 54 1_555 -0.713 -0.273 1.867 8.973 -2.796 9.437 23 A_C176:G196_A A 176 ? A 196 ? 19 1 1 A G 35 1_555 A C 52 1_555 1.353 0.339 -0.359 -4.470 -5.721 -20.258 24 A_G177:C194_A A 177 ? A 194 ? ? 1 1 A G 38 1_555 A C 50 1_555 -1.210 -0.325 1.552 -1.085 14.379 22.179 25 A_G180:C192_A A 180 ? A 192 ? 19 1 1 A G 39 1_555 A C 48 1_555 -0.861 -0.305 0.729 -17.327 10.094 -17.422 26 A_G181:C190_A A 181 ? A 190 ? ? 1 1 A U 42 1_555 A G 45 1_555 2.955 -0.364 -1.699 54.397 19.630 5.185 27 A_U184:G187_A A 184 ? A 187 ? 28 1 1 A C 63 1_555 A G 86 1_555 1.360 0.135 -0.621 2.544 -20.170 -8.748 28 A_C205:G228_A A 205 ? A 228 ? ? 1 1 A G 65 1_555 A C 84 1_555 1.113 0.625 -0.355 -9.620 -5.875 1.590 29 A_G207:C226_A A 207 ? A 226 ? 19 1 1 A G 66 1_555 A C 83 1_555 0.561 0.415 -0.447 -7.260 -6.853 -0.417 30 A_G208:C225_A A 208 ? A 225 ? 19 1 1 A U 67 1_555 A G 82 1_555 0.321 0.196 -0.422 -1.604 -6.512 -11.754 31 A_U209:G224_A A 209 ? A 224 ? ? 1 1 A G 68 1_555 A C 81 1_555 0.685 0.079 -0.403 -7.085 -8.498 -17.828 32 A_G210:C223_A A 210 ? A 223 ? 19 1 1 A U 69 1_555 A G 80 1_555 2.616 -0.776 -0.121 -2.374 -10.142 -27.531 33 A_U211:G222_A A 211 ? A 222 ? 28 1 1 A G 71 1_555 A C 79 1_555 0.156 -1.256 2.115 -7.076 10.232 13.099 34 A_G213:C221_A A 213 ? A 221 ? 19 1 1 A U 72 1_555 A C 78 1_555 0.650 -1.273 1.917 0.799 18.097 11.673 35 A_U214:C220_A A 214 ? A 220 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 1 1_555 A U 118 1_555 A A 2 1_555 A U 117 1_555 -0.164 -1.387 3.697 -1.328 10.167 35.865 -3.622 0.067 3.204 16.108 2.105 37.255 1 AA_A143A144:U259U260_AA A 143 ? A 260 ? A 144 ? A 259 ? 1 A A 2 1_555 A U 117 1_555 A G 3 1_555 A C 116 1_555 -0.213 -1.431 3.611 0.111 7.600 31.522 -3.976 0.403 3.188 13.741 -0.200 32.403 2 AA_A144G145:C258U259_AA A 144 ? A 259 ? A 145 ? A 258 ? 1 A G 3 1_555 A C 116 1_555 A C 4 1_555 A G 115 1_555 -0.002 -1.396 3.157 -0.138 2.641 31.012 -3.079 -0.020 3.031 4.928 0.257 31.122 3 AA_G145C146:G257C258_AA A 145 ? A 258 ? A 146 ? A 257 ? 1 A C 4 1_555 A G 115 1_555 A U 5 1_555 A A 114 1_555 0.243 -1.366 3.539 -0.089 6.526 31.305 -3.711 -0.458 3.195 11.931 0.162 31.962 4 AA_C146U147:A256G257_AA A 146 ? A 257 ? A 147 ? A 256 ? 1 A U 5 1_555 A A 114 1_555 A U 6 1_555 A A 113 1_555 0.278 -1.320 3.445 -0.940 7.302 32.075 -3.590 -0.653 3.069 13.002 1.673 32.888 5 AA_U147U148:A255A256_AA A 147 ? A 256 ? A 148 ? A 255 ? 1 A G 9 1_555 A C 108 1_555 A U 10 1_555 A A 107 1_555 0.727 -1.468 3.096 -0.154 3.893 27.553 -3.906 -1.546 2.861 8.121 0.322 27.822 6 AA_G151U152:A249C250_AA A 151 ? A 250 ? A 152 ? A 249 ? 1 A U 12 1_555 A G 105 1_555 A C 13 1_555 A G 104 1_555 0.070 -1.336 3.279 1.187 10.598 35.780 -3.420 0.039 2.786 16.795 -1.882 37.285 7 AA_U154C155:G246G247_AA A 154 ? A 247 ? A 155 ? A 246 ? 1 A C 16 1_555 A U 101 1_555 A A 17 1_555 A U 100 1_555 -0.382 -1.312 3.469 -1.216 11.428 29.328 -4.542 0.478 2.788 21.557 2.293 31.453 8 AA_C158A159:U242U243_AA A 158 ? A 243 ? A 159 ? A 242 ? 1 A C 22 1_555 A G 96 1_555 A C 23 1_555 A G 95 1_555 0.086 -2.065 4.025 -1.089 10.554 27.663 -6.543 -0.427 3.043 21.115 2.179 29.591 9 AA_C164C165:G237G238_AA A 164 ? A 238 ? A 165 ? A 237 ? 1 A C 23 1_555 A G 95 1_555 A C 24 1_555 A G 94 1_555 -0.591 -1.380 3.423 -0.943 10.062 31.475 -4.112 0.882 2.874 17.977 1.684 33.019 10 AA_C165C166:G236G237_AA A 165 ? A 237 ? A 166 ? A 236 ? 1 A C 24 1_555 A G 94 1_555 A U 25 1_555 A A 93 1_555 -0.752 -1.334 3.447 -0.635 10.724 31.475 -4.117 1.209 2.865 19.086 1.131 33.214 11 AA_C166U167:A235G236_AA A 166 ? A 236 ? A 167 ? A 235 ? 1 A U 25 1_555 A A 93 1_555 A C 26 1_555 A G 92 1_555 0.684 -1.171 3.177 -0.521 8.247 33.211 -3.200 -1.239 2.804 14.158 0.895 34.195 12 AA_U167C168:G234A235_AA A 167 ? A 235 ? A 168 ? A 234 ? 1 A C 29 1_555 A G 61 1_555 A U 30 1_555 A A 60 1_555 -0.119 -1.202 3.449 1.811 10.035 35.277 -3.292 0.439 2.998 16.146 -2.913 36.676 13 AA_C171U172:A202G203_AA A 171 ? A 203 ? A 172 ? A 202 ? 1 A U 30 1_555 A A 60 1_555 A C 31 1_555 A G 59 1_555 0.095 -1.333 3.206 0.137 7.062 31.560 -3.567 -0.148 2.848 12.785 -0.248 32.321 14 AA_U172C173:G201A202_AA A 172 ? A 202 ? A 173 ? A 201 ? 1 A U 33 1_555 A A 56 1_555 A C 34 1_555 A G 54 1_555 3.675 -2.772 3.137 -18.697 4.066 20.071 -6.248 -9.759 -0.575 9.361 43.039 27.662 15 AA_U175C176:G196A198_AA A 175 ? A 198 ? A 176 ? A 196 ? 1 A C 34 1_555 A G 54 1_555 A G 35 1_555 A C 52 1_555 0.041 -2.058 5.467 -6.355 19.095 56.217 -3.610 -0.552 4.585 19.583 6.517 59.433 16 AA_C176G177:C194G196_AA A 176 ? A 196 ? A 177 ? A 194 ? 1 A G 65 1_555 A C 84 1_555 A G 66 1_555 A C 83 1_555 -0.159 -1.429 3.262 0.758 7.631 29.046 -4.238 0.454 2.799 14.890 -1.479 30.020 17 AA_G207G208:C225C226_AA A 207 ? A 226 ? A 208 ? A 225 ? 1 A G 66 1_555 A C 83 1_555 A U 67 1_555 A G 82 1_555 -0.720 -1.429 3.218 0.057 8.180 31.094 -3.944 1.311 2.761 14.937 -0.104 32.127 18 AA_G208U209:G224C225_AA A 208 ? A 225 ? A 209 ? A 224 ? 1 A U 67 1_555 A G 82 1_555 A G 68 1_555 A C 81 1_555 -0.360 -1.346 3.510 1.009 16.488 35.281 -4.011 0.662 2.637 25.546 -1.563 38.845 19 AA_U209G210:C223G224_AA A 209 ? A 224 ? A 210 ? A 223 ? 1 A G 68 1_555 A C 81 1_555 A U 69 1_555 A G 80 1_555 -0.509 -1.395 3.369 0.297 11.541 41.542 -3.013 0.722 2.896 15.906 -0.409 43.048 20 AA_G210U211:G222C223_AA A 210 ? A 223 ? A 211 ? A 222 ? 1 A U 69 1_555 A G 80 1_555 A G 71 1_555 A C 79 1_555 -0.333 -3.150 5.919 1.551 20.308 37.780 -7.555 0.704 3.805 28.939 -2.211 42.743 21 AA_U211G213:C221G222_AA A 211 ? A 222 ? A 213 ? A 221 ? 1 A G 71 1_555 A C 79 1_555 A U 72 1_555 A C 78 1_555 -0.175 -1.281 3.463 0.696 11.762 31.851 -4.073 0.410 2.822 20.574 -1.217 33.908 22 AA_G213U214:C220C221_AA A 213 ? A 221 ? A 214 ? A 220 ? # _pdbx_audit_support.funding_organization 'Polish National Science Centre' _pdbx_audit_support.country Poland _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 8QO3 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P # loop_ #