data_8QOR # _entry.id 8QOR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8QOR pdb_00008qor 10.2210/pdb8qor/pdb WWPDB D_1292133681 ? ? BMRB 34867 ? 10.13018/BMR34867 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-06-26 2 'Structure model' 1 1 2024-07-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8QOR _pdbx_database_status.recvd_initial_deposition_date 2023-09-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 8QDU unspecified PDB . 8QE4 unspecified BMRB ;Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions ; 34867 unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email cgonzalez@iqf.csic.es _pdbx_contact_author.name_first Carlos _pdbx_contact_author.name_last Gonzalez _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-8796-1282 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'El-Khoury, R.' 1 ? 'Cabrero, C.' 2 ? 'Movilla, S.' 3 ? 'Friedland, D.' 4 ? 'Thorpe, J.D.' 5 ? 'Roman, M.' 6 ? 'Orozco, M.' 7 ? 'Gonzalez, C.' 8 ? 'Damha, M.' 9 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 52 _citation.language ? _citation.page_first 7414 _citation.page_last 7428 _citation.title ;Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions. ; _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkae508 _citation.pdbx_database_id_PubMed 38874502 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'El-Khoury, R.' 1 ? primary 'Cabrero, C.' 2 ? primary 'Movilla, S.' 3 ? primary 'Kaur, H.' 4 ? primary 'Friedland, D.' 5 ? primary 'Dominguez, A.' 6 ? primary 'Thorpe, J.D.' 7 ? primary 'Roman, M.' 8 ? primary 'Orozco, M.' 9 ? primary 'Gonzalez, C.' 10 ? primary 'Damha, M.J.' 11 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*(CFL)P*(FRG)P*(CFL)P*(FRG)P*(CFL)P*(FRG))-3') ; _entity.formula_weight 1918.151 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(CFL)(GF2)(CFL)(GF2)(CFL)(GF2)' _entity_poly.pdbx_seq_one_letter_code_can CXCXCX _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CFL n 1 2 GF2 n 1 3 CFL n 1 4 GF2 n 1 5 CFL n 1 6 GF2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CFL 'DNA linking' n '4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)pyrimidin-2(1H)-one' "2'-FLUORO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" 'C9 H13 F N3 O7 P' 325.188 GF2 'DNA linking' n ;2'-deoxy-2'-fluoroguanosine 5'-(dihydrogen phosphate) ; ? 'C10 H13 F N5 O7 P' 365.212 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CFL 1 1 1 CFL CFL A . n A 1 2 GF2 2 2 2 GF2 FRG A . n A 1 3 CFL 3 3 3 CFL CFL A . n A 1 4 GF2 4 4 4 GF2 FRG A . n A 1 5 CFL 5 5 5 CFL CFL A . n A 1 6 GF2 6 6 6 GF2 FRG A . n B 1 1 CFL 1 7 7 CFL CFL B . n B 1 2 GF2 2 8 8 GF2 FRG B . n B 1 3 CFL 3 9 9 CFL CFL B . n B 1 4 GF2 4 10 10 GF2 FRG B . n B 1 5 CFL 5 11 11 CFL CFL B . n B 1 6 GF2 6 12 12 GF2 FRG B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8QOR _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8QOR _struct.title ;Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8QOR _struct_keywords.text ;2'F-ANA, 2'F-RNA, Z-DNA, DNA ; _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8QOR _struct_ref.pdbx_db_accession 8QOR _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8QOR A 1 ? 6 ? 8QOR 1 ? 6 ? 1 6 2 1 8QOR B 1 ? 6 ? 8QOR 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A CFL 1 "O3'" ? ? ? 1_555 A GF2 2 P ? ? A CFL 1 A GF2 2 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale2 covale one ? A GF2 2 "O3'" ? ? ? 1_555 A CFL 3 P ? ? A GF2 2 A CFL 3 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale3 covale one ? A CFL 3 "O3'" ? ? ? 1_555 A GF2 4 P ? ? A CFL 3 A GF2 4 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale4 covale one ? A GF2 4 "O3'" ? ? ? 1_555 A CFL 5 P ? ? A GF2 4 A CFL 5 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale5 covale one ? A CFL 5 "O3'" ? ? ? 1_555 A GF2 6 P ? ? A CFL 5 A GF2 6 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale6 covale one ? B CFL 1 "O3'" ? ? ? 1_555 B GF2 2 P ? ? B CFL 7 B GF2 8 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale7 covale one ? B GF2 2 "O3'" ? ? ? 1_555 B CFL 3 P ? ? B GF2 8 B CFL 9 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale8 covale one ? B CFL 3 "O3'" ? ? ? 1_555 B GF2 4 P ? ? B CFL 9 B GF2 10 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale9 covale one ? B GF2 4 "O3'" ? ? ? 1_555 B CFL 5 P ? ? B GF2 10 B CFL 11 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale10 covale one ? B CFL 5 "O3'" ? ? ? 1_555 B GF2 6 P ? ? B CFL 11 B GF2 12 1_555 ? ? ? ? ? ? ? 1.623 ? ? hydrog1 hydrog ? ? A CFL 1 N3 ? ? ? 1_555 B GF2 6 N1 ? ? A CFL 1 B GF2 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A CFL 1 N4 ? ? ? 1_555 B GF2 6 O6 ? ? A CFL 1 B GF2 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A CFL 1 O2 ? ? ? 1_555 B GF2 6 N2 ? ? A CFL 1 B GF2 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A GF2 2 N1 ? ? ? 1_555 B CFL 5 N3 ? ? A GF2 2 B CFL 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A GF2 2 N2 ? ? ? 1_555 B CFL 5 O2 ? ? A GF2 2 B CFL 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A GF2 2 O6 ? ? ? 1_555 B CFL 5 N4 ? ? A GF2 2 B CFL 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A CFL 3 N3 ? ? ? 1_555 B GF2 4 N1 ? ? A CFL 3 B GF2 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A CFL 3 N4 ? ? ? 1_555 B GF2 4 O6 ? ? A CFL 3 B GF2 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A CFL 3 O2 ? ? ? 1_555 B GF2 4 N2 ? ? A CFL 3 B GF2 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A GF2 4 N1 ? ? ? 1_555 B CFL 3 N3 ? ? A GF2 4 B CFL 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A GF2 4 N2 ? ? ? 1_555 B CFL 3 O2 ? ? A GF2 4 B CFL 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A GF2 4 O6 ? ? ? 1_555 B CFL 3 N4 ? ? A GF2 4 B CFL 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A CFL 5 N3 ? ? ? 1_555 B GF2 2 N1 ? ? A CFL 5 B GF2 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A CFL 5 N4 ? ? ? 1_555 B GF2 2 O6 ? ? A CFL 5 B GF2 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A CFL 5 O2 ? ? ? 1_555 B GF2 2 N2 ? ? A CFL 5 B GF2 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A GF2 6 N1 ? ? ? 1_555 B CFL 1 N3 ? ? A GF2 6 B CFL 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A GF2 6 N2 ? ? ? 1_555 B CFL 1 O2 ? ? A GF2 6 B CFL 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A GF2 6 O6 ? ? ? 1_555 B CFL 1 N4 ? ? A GF2 6 B CFL 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_entry_details.entry_id 8QOR _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_nmr_ensemble.entry_id 8QOR _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8QOR _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;0.5 M DNA (5'-D(*(CFL)P*(FRG)P*(CFL)P*(FRG)P*(CFL)P*(FRG))-3'), 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 'natural abundance' _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component ;DNA (5'-D(*(CFL)P*(FRG)P*(CFL)P*(FRG)P*(CFL)P*(FRG))-3') ; _pdbx_nmr_exptl_sample.concentration 0.5 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units M _pdbx_nmr_exptl_sample.isotopic_labeling 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 1H _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic 3 1 1 '2D 1H-1H COSY' 1 isotropic # _pdbx_nmr_refine.entry_id 8QOR _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 5 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin ? 'Bruker Biospin' 2 processing TopSpin ? 'Bruker Biospin' 3 'chemical shift assignment' NMRFAM-SPARKY ? 'Goddard & Kneller' 4 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 5 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 6 'data analysis' MOLMOL ? 'Koradi, Billeter and Wuthrich' 7 'data analysis' 3DNA ? 'Lu & Olson' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CFL O3P O N N 1 CFL P P N N 2 CFL O1P O N N 3 CFL O2P O N N 4 CFL "O5'" O N N 5 CFL "C5'" C N N 6 CFL "C4'" C N R 7 CFL "O4'" O N N 8 CFL "C3'" C N R 9 CFL "O3'" O N N 10 CFL "C2'" C N S 11 CFL "C1'" C N R 12 CFL N1 N N N 13 CFL C2 C N N 14 CFL O2 O N N 15 CFL N3 N N N 16 CFL C4 C N N 17 CFL N4 N N N 18 CFL C5 C N N 19 CFL C6 C N N 20 CFL F F N N 21 CFL HO3P H N N 22 CFL HO1P H N N 23 CFL "H5'1" H N N 24 CFL "H5'2" H N N 25 CFL "H4'" H N N 26 CFL "H3'" H N N 27 CFL "HO3'" H N N 28 CFL "H2'" H N N 29 CFL "H1'" H N N 30 CFL HN41 H N N 31 CFL HN42 H N N 32 CFL H5 H N N 33 CFL H6 H N N 34 GF2 F F N N 35 GF2 P P N N 36 GF2 N1 N N N 37 GF2 C2 C N N 38 GF2 N2 N N N 39 GF2 N3 N N N 40 GF2 C4 C Y N 41 GF2 C5 C Y N 42 GF2 C6 C N N 43 GF2 O6 O N N 44 GF2 N7 N Y N 45 GF2 C8 C Y N 46 GF2 N9 N Y N 47 GF2 "C1'" C N R 48 GF2 OP2 O N N 49 GF2 "C2'" C N R 50 GF2 OP1 O N N 51 GF2 "C3'" C N R 52 GF2 "O3'" O N N 53 GF2 "C4'" C N R 54 GF2 "O4'" O N N 55 GF2 "C5'" C N N 56 GF2 "O5'" O N N 57 GF2 OP3 O N N 58 GF2 HN1 H N N 59 GF2 HN2 H N N 60 GF2 HN2A H N N 61 GF2 H8 H N N 62 GF2 "H1'" H N N 63 GF2 HOP2 H N N 64 GF2 "H2'" H N N 65 GF2 "H3'" H N N 66 GF2 "HO3'" H N N 67 GF2 "H4'" H N N 68 GF2 "H5'" H N N 69 GF2 "H5'A" H N N 70 GF2 HOP3 H N N 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CFL O3P P sing N N 1 CFL O3P HO3P sing N N 2 CFL P O1P sing N N 3 CFL P O2P doub N N 4 CFL P "O5'" sing N N 5 CFL O1P HO1P sing N N 6 CFL "O5'" "C5'" sing N N 7 CFL "C5'" "C4'" sing N N 8 CFL "C5'" "H5'1" sing N N 9 CFL "C5'" "H5'2" sing N N 10 CFL "C4'" "O4'" sing N N 11 CFL "C4'" "C3'" sing N N 12 CFL "C4'" "H4'" sing N N 13 CFL "O4'" "C1'" sing N N 14 CFL "C3'" "O3'" sing N N 15 CFL "C3'" "C2'" sing N N 16 CFL "C3'" "H3'" sing N N 17 CFL "O3'" "HO3'" sing N N 18 CFL "C2'" "C1'" sing N N 19 CFL "C2'" F sing N N 20 CFL "C2'" "H2'" sing N N 21 CFL "C1'" N1 sing N N 22 CFL "C1'" "H1'" sing N N 23 CFL N1 C2 sing N N 24 CFL N1 C6 sing N N 25 CFL C2 O2 doub N N 26 CFL C2 N3 sing N N 27 CFL N3 C4 doub N N 28 CFL C4 N4 sing N N 29 CFL C4 C5 sing N N 30 CFL N4 HN41 sing N N 31 CFL N4 HN42 sing N N 32 CFL C5 C6 doub N N 33 CFL C5 H5 sing N N 34 CFL C6 H6 sing N N 35 GF2 P "O5'" sing N N 36 GF2 N1 C2 sing N N 37 GF2 C2 N3 doub N N 38 GF2 C2 N2 sing N N 39 GF2 C4 N3 sing N N 40 GF2 C5 C4 doub Y N 41 GF2 C6 N1 sing N N 42 GF2 C6 C5 sing N N 43 GF2 O6 C6 doub N N 44 GF2 N7 C5 sing Y N 45 GF2 N7 C8 doub Y N 46 GF2 C8 N9 sing Y N 47 GF2 N9 C4 sing Y N 48 GF2 N9 "C1'" sing N N 49 GF2 "C1'" "O4'" sing N N 50 GF2 OP2 P sing N N 51 GF2 "C2'" F sing N N 52 GF2 "C2'" "C1'" sing N N 53 GF2 OP1 P doub N N 54 GF2 "C3'" "C2'" sing N N 55 GF2 "C3'" "C4'" sing N N 56 GF2 "O3'" "C3'" sing N N 57 GF2 "C4'" "O4'" sing N N 58 GF2 "C5'" "C4'" sing N N 59 GF2 "O5'" "C5'" sing N N 60 GF2 P OP3 sing N N 61 GF2 N1 HN1 sing N N 62 GF2 N2 HN2 sing N N 63 GF2 N2 HN2A sing N N 64 GF2 C8 H8 sing N N 65 GF2 "C1'" "H1'" sing N N 66 GF2 OP2 HOP2 sing N N 67 GF2 "C2'" "H2'" sing N N 68 GF2 "C3'" "H3'" sing N N 69 GF2 "O3'" "HO3'" sing N N 70 GF2 "C4'" "H4'" sing N N 71 GF2 "C5'" "H5'" sing N N 72 GF2 "C5'" "H5'A" sing N N 73 GF2 OP3 HOP3 sing N N 74 # _ndb_struct_conf_na.entry_id 8QOR _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A CFL 1 1_555 B GF2 6 1_555 -0.341 -0.207 -0.452 6.976 -3.925 1.501 1 A_CFL1:GF212_B A 1 ? B 12 ? 19 1 1 A GF2 2 1_555 B CFL 5 1_555 -0.438 -0.130 -0.106 9.580 -7.035 1.892 2 A_GF22:CFL11_B A 2 ? B 11 ? 19 1 1 A CFL 3 1_555 B GF2 4 1_555 0.333 -0.174 -0.518 4.385 -4.725 1.264 3 A_CFL3:GF210_B A 3 ? B 10 ? 19 1 1 A GF2 4 1_555 B CFL 3 1_555 -0.387 -0.169 -0.552 -4.687 -3.669 0.645 4 A_GF24:CFL9_B A 4 ? B 9 ? 19 1 1 A CFL 5 1_555 B GF2 2 1_555 0.377 -0.101 0.014 -11.016 -7.223 -0.097 5 A_CFL5:GF28_B A 5 ? B 8 ? 19 1 1 A GF2 6 1_555 B CFL 1 1_555 0.522 -0.235 -0.471 -7.941 -0.220 -0.225 6 A_GF26:CFL7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A CFL 1 1_555 B GF2 6 1_555 A GF2 2 1_555 B CFL 5 1_555 0.069 5.383 2.913 0.150 -8.811 -12.552 -10.296 0.426 5.470 35.172 0.600 -15.326 1 AA_CFL1GF22:CFL11GF212_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A GF2 2 1_555 B CFL 5 1_555 A CFL 3 1_555 B GF2 4 1_555 -0.008 -1.890 3.256 1.468 -12.361 -35.332 4.418 0.163 2.478 19.629 2.332 -37.394 2 AA_GF22CFL3:GF210CFL11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A CFL 3 1_555 B GF2 4 1_555 A GF2 4 1_555 B CFL 3 1_555 0.042 5.856 3.039 0.541 -14.024 -8.858 -1.997 0.850 6.568 57.852 2.231 -16.584 3 AA_CFL3GF24:CFL9GF210_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A GF2 4 1_555 B CFL 3 1_555 A CFL 5 1_555 B GF2 2 1_555 0.104 -1.827 3.276 -2.967 -9.470 -36.959 3.906 -0.191 2.742 14.617 -4.580 -38.223 4 AA_GF24CFL5:GF28CFL9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A CFL 5 1_555 B GF2 2 1_555 A GF2 6 1_555 B CFL 1 1_555 -0.043 5.354 2.926 1.002 -6.586 -13.996 -13.402 0.823 4.912 25.243 3.839 -15.493 5 AA_CFL5GF26:CFL7GF28_BB A 5 ? B 8 ? A 6 ? B 7 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Spanish Ministry of Science, Innovation, and Universities' Spain BFU2017-89707-P 1 'Spanish Ministry of Science, Innovation, and Universities' Spain PRE2018-083173 2 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE NEO' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 8QOR _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C F H N O P # loop_