HEADER PLANT PROTEIN 01-OCT-23 8QPD TITLE STRUCTURE OF THIOREDOXIN M FROM PEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN M-TYPE, CHLOROPLASTIC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PISUM SATIVUM; SOURCE 3 ORGANISM_COMMON: GARDEN PEA; SOURCE 4 ORGANISM_TAXID: 3888; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS STRUCTURE FROM CYANA 2.1, REDOX PROCESS, PLANT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.L.NEIRA,A.CAMARA ARTIGAS REVDAT 2 27-MAR-24 8QPD 1 JRNL REVDAT 1 14-FEB-24 8QPD 0 JRNL AUTH J.L.NEIRA,M.PALOMINO-SCHATZLEIN,V.REJAS,J.A.TRAVERSO,M.RICO, JRNL AUTH 2 J.LOPEZ-GORGE,A.CHUECA,A.CAMARA-ARTIGAS JRNL TITL THREE-DIMENSIONAL SOLUTION STRUCTURE, DYNAMICS AND BINDING JRNL TITL 2 OF THIOREDOXIN M FROM PISUM SATIVUM. JRNL REF INT.J.BIOL.MACROMOL. V. 262 29781 2024 JRNL REFN ISSN 0141-8130 JRNL PMID 38296131 JRNL DOI 10.1016/J.IJBIOMAC.2024.129781 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QPD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292133698. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303 REMARK 210 PH : 5.9; 5.9 REMARK 210 IONIC STRENGTH : 0.050; 0.050 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 2.0 MM THIOREDOXIN M FROM PEA REMARK 210 SATIVUM, 90% H2O/10% D2O; 2.0 MM REMARK 210 [U-100% 13C; U-100% 15N; U-80% REMARK 210 2H] THIOREDOXIN M FROM PEA REMARK 210 SATIVUM, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 3D HNCACB; 3D HNCO; 3D HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 2 -40.79 -133.06 REMARK 500 1 GLU A 4 146.83 67.63 REMARK 500 1 GLN A 6 133.67 168.72 REMARK 500 1 VAL A 7 87.11 33.68 REMARK 500 1 VAL A 8 -37.05 -130.01 REMARK 500 1 ASN A 9 126.77 64.96 REMARK 500 1 ASP A 10 -64.32 73.00 REMARK 500 1 SER A 12 -75.98 -57.65 REMARK 500 1 PRO A 23 98.64 -69.71 REMARK 500 1 TRP A 29 -33.05 -145.16 REMARK 500 1 ALA A 30 127.29 64.25 REMARK 500 1 TRP A 32 -24.76 -39.44 REMARK 500 1 PRO A 35 3.66 -69.83 REMARK 500 1 CYS A 36 169.61 -44.43 REMARK 500 1 ARG A 37 90.58 -42.30 REMARK 500 1 MET A 38 -77.01 -79.19 REMARK 500 1 ALA A 40 140.49 171.20 REMARK 500 1 ALA A 51 -92.41 173.47 REMARK 500 1 CYS A 56 158.44 179.71 REMARK 500 1 GLU A 63 -28.87 177.02 REMARK 500 1 SER A 64 71.83 48.46 REMARK 500 1 ASN A 66 -94.15 -71.22 REMARK 500 1 LYS A 70 -89.60 -133.57 REMARK 500 1 ILE A 73 46.97 -102.50 REMARK 500 1 SER A 75 -146.33 -179.90 REMARK 500 1 ILE A 76 91.12 25.00 REMARK 500 1 ASN A 84 29.38 -179.85 REMARK 500 1 LYS A 88 -72.00 -38.71 REMARK 500 1 VAL A 95 51.39 81.34 REMARK 500 1 PRO A 96 -90.90 -69.80 REMARK 500 1 LEU A 100 -70.21 -64.12 REMARK 500 1 VAL A 104 -78.69 -119.34 REMARK 500 1 GLU A 105 -33.21 -178.93 REMARK 500 1 LYS A 106 -74.17 -172.42 REMARK 500 2 VAL A 2 -173.06 -65.22 REMARK 500 2 ASN A 3 -80.43 -101.03 REMARK 500 2 GLU A 4 -29.41 174.50 REMARK 500 2 VAL A 5 91.63 28.76 REMARK 500 2 GLN A 6 166.36 170.81 REMARK 500 2 VAL A 7 90.64 28.89 REMARK 500 2 VAL A 8 -36.39 -154.67 REMARK 500 2 ASN A 9 -96.01 34.31 REMARK 500 2 ASP A 10 -90.38 -33.98 REMARK 500 2 SER A 12 -70.79 -53.82 REMARK 500 2 GLU A 15 10.19 -146.04 REMARK 500 2 ALA A 30 120.52 65.18 REMARK 500 2 TRP A 32 -74.06 -34.12 REMARK 500 2 CYS A 33 105.54 -39.82 REMARK 500 2 PRO A 35 4.78 -69.81 REMARK 500 2 CYS A 36 129.85 62.70 REMARK 500 REMARK 500 THIS ENTRY HAS 727 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 52150 RELATED DB: BMRB DBREF 8QPD A 1 108 UNP P48384 TRXM_PEA 65 172 SEQADV 8QPD LYS A 87 UNP P48384 ARG 151 ENGINEERED MUTATION SEQRES 1 A 108 ALA VAL ASN GLU VAL GLN VAL VAL ASN ASP SER SER TRP SEQRES 2 A 108 ASP GLU LEU VAL ILE GLY SER GLU THR PRO VAL LEU VAL SEQRES 3 A 108 ASP PHE TRP ALA PRO TRP CYS GLY PRO CYS ARG MET ILE SEQRES 4 A 108 ALA PRO ILE ILE ASP GLU LEU ALA LYS GLU TYR ALA GLY SEQRES 5 A 108 LYS ILE LYS CYS TYR LYS LEU ASN THR ASP GLU SER PRO SEQRES 6 A 108 ASN THR ALA THR LYS TYR GLY ILE ARG SER ILE PRO THR SEQRES 7 A 108 VAL LEU PHE PHE LYS ASN GLY GLU LYS LYS ASP SER VAL SEQRES 8 A 108 ILE GLY ALA VAL PRO LYS ALA THR LEU SER GLU LYS VAL SEQRES 9 A 108 GLU LYS TYR ILE HELIX 1 AA1 ASP A 10 LEU A 16 1 7 HELIX 2 AA2 ALA A 40 TYR A 50 1 11 HELIX 3 AA3 SER A 64 LYS A 70 1 7 HELIX 4 AA4 VAL A 95 VAL A 104 1 10 SHEET 1 AA1 4 LYS A 55 LYS A 58 0 SHEET 2 AA1 4 VAL A 24 ASP A 27 1 N ASP A 27 O TYR A 57 SHEET 3 AA1 4 VAL A 79 PHE A 82 -1 O LEU A 80 N VAL A 26 SHEET 4 AA1 4 ASP A 89 VAL A 91 -1 O VAL A 91 N VAL A 79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1