HEADER ELECTRON TRANSPORT 04-OCT-23 8QQ7 TITLE STRUCTURE OF SPNOX: A BACTERIAL NADPH OXIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAD-BINDING FR-TYPE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 GENE: SPR0531; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NADPH OXIDASE, REACTIVE OXYGEN SPECIES PRODUCTION, MEMBRANE PROTEIN, KEYWDS 2 STREPTOCOCCUS PNEUMONIAE, F397W MUTANT, ELECTRON TRANSPORT., KEYWDS 3 ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.THEPAUT,I.PETIT-HARTLEIN,A.VERMOT,V.CHAPTAL,A.S.HUMM,F.DUPEUX, AUTHOR 2 J.A.MARQUEZ,S.SMITH,F.FIESCHI REVDAT 1 08-MAY-24 8QQ7 0 JRNL AUTH I.PETIT-HARTLEIN,A.VERMOT,M.THEPAUT,A.S.HUMM,F.DUPEUX, JRNL AUTH 2 J.DUPUY,V.CHAPTAL,J.A.MARQUEZ,S.M.E.SMITH,F.FIESCHI JRNL TITL X-RAY STRUCTURE AND ENZYMATIC STUDY OF A BACTERIAL NADPH JRNL TITL 2 OXIDASE HIGHLIGHT THE ACTIVATION MECHANISM OF EUKARYOTIC JRNL TITL 3 NOX. JRNL REF ELIFE V. 13 2024 JRNL REFN ESSN 2050-084X JRNL PMID 38640072 JRNL DOI 10.7554/ELIFE.93759 REMARK 2 REMARK 2 RESOLUTION. 3.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 47.9 REMARK 3 NUMBER OF REFLECTIONS : 5262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.264 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.320 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 245 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 6.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE SET COUNT : 3 REMARK 3 BIN FREE R VALUE : 0.5070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3265 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 139 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 201.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.73000 REMARK 3 B22 (A**2) : 1.73000 REMARK 3 B33 (A**2) : -5.61000 REMARK 3 B12 (A**2) : 0.86000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 1.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 1.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 78.364 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3520 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4805 ; 1.727 ; 1.669 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ; 8.416 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;32.378 ;22.025 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 573 ;17.803 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.245 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 437 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2660 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1595 ;19.415 ;18.698 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1992 ;31.664 ;28.001 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1922 ;23.462 ;21.085 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.60 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QQ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292126585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5508 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.620 REMARK 200 RESOLUTION RANGE LOW (A) : 47.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : 20.00 REMARK 200 R MERGE FOR SHELL (I) : 2.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: MODEL FROM PROMALS3D AND I-TASSER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 4.04 MG/ML IN 50 MM TRIS PH REMARK 280 7, 300 MM NACL, 0.025 MM MNG3, 0.01 MM FAD. CRYSTALLIZATION REMARK 280 CONDITION: 30.5% PEG 300, 0.15 M LI2SO4, 0.15 M NACL AND 0.1 M REMARK 280 MES PH6. DROP: 6 UL OF PROTEIN + 6 UL OF WELL., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.20633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.41267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.20633 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 102.41267 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.20633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 102.41267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.20633 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 102.41267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 400 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 4 55.73 -152.04 REMARK 500 THR A 28 -70.62 -88.55 REMARK 500 HIS A 60 -69.42 92.38 REMARK 500 ARG A 94 -4.10 84.12 REMARK 500 ALA A 96 -49.99 -138.88 REMARK 500 GLN A 121 110.79 62.62 REMARK 500 MET A 147 64.73 -103.22 REMARK 500 THR A 191 -54.96 -135.66 REMARK 500 ASN A 197 -123.52 45.87 REMARK 500 HIS A 198 -31.11 -143.50 REMARK 500 SER A 252 -134.00 42.43 REMARK 500 ARG A 284 172.97 -59.69 REMARK 500 HIS A 306 101.25 57.98 REMARK 500 ARG A 320 -52.50 73.28 REMARK 500 ASP A 351 -55.11 71.77 REMARK 500 ALA A 365 124.91 -171.20 REMARK 500 ASN A 387 113.31 -169.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1002 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 NE2 REMARK 620 2 HEM A1002 NA 113.8 REMARK 620 3 HEM A1002 NB 84.8 88.9 REMARK 620 4 HEM A1002 NC 66.2 178.9 90.0 REMARK 620 5 HEM A1002 ND 95.6 91.1 179.5 90.0 REMARK 620 6 HIS A 129 NE2 178.6 67.1 96.3 113.0 83.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1001 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 HEM A1001 NA 88.8 REMARK 620 3 HEM A1001 NB 97.8 88.9 REMARK 620 4 HEM A1001 NC 91.3 178.9 89.9 REMARK 620 5 HEM A1001 ND 81.8 91.1 179.5 90.0 REMARK 620 6 HIS A 142 NE2 174.6 90.1 87.5 89.9 92.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SASDJ63 RELATED DB: SASBDB DBREF 8QQ7 A 1 400 UNP Q8CZ28 Q8CZ28_STRR6 1 400 SEQADV 8QQ7 TRP A 397 UNP Q8CZ28 PHE 397 ENGINEERED MUTATION SEQRES 1 A 400 MET GLU PHE SER MET LYS SER VAL LYS GLY LEU LEU PHE SEQRES 2 A 400 ILE ILE ALA SER PHE ILE LEU THR LEU LEU THR TRP MET SEQRES 3 A 400 ASN THR SER PRO GLN PHE MET ILE PRO GLY LEU ALA LEU SEQRES 4 A 400 THR SER LEU SER LEU THR PHE ILE LEU ALA THR ARG LEU SEQRES 5 A 400 PRO LEU LEU GLU SER TRP PHE HIS SER LEU GLU LYS VAL SEQRES 6 A 400 TYR THR VAL HIS LYS PHE THR ALA PHE LEU SER ILE ILE SEQRES 7 A 400 LEU LEU ILE PHE HIS ASN PHE SER MET GLY GLY LEU TRP SEQRES 8 A 400 GLY SER ARG LEU ALA ALA GLN PHE GLY ASN LEU ALA ILE SEQRES 9 A 400 TYR ILE PHE ALA SER ILE ILE LEU VAL ALA TYR LEU GLY SEQRES 10 A 400 LYS TYR ILE GLN TYR GLU ALA TRP ARG TRP ILE HIS ARG SEQRES 11 A 400 LEU VAL TYR LEU ALA TYR ILE LEU GLY LEU PHE HIS ILE SEQRES 12 A 400 TYR MET ILE MET GLY ASN ARG LEU LEU THR PHE ASN LEU SEQRES 13 A 400 LEU SER PHE LEU VAL GLY SER TYR ALA LEU LEU GLY LEU SEQRES 14 A 400 LEU ALA GLY PHE TYR ILE ILE PHE LEU TYR GLN LYS ILE SEQRES 15 A 400 SER PHE PRO TYR LEU GLY LYS ILE THR HIS LEU LYS ARG SEQRES 16 A 400 LEU ASN HIS ASP THR ARG GLU ILE GLN ILE HIS LEU SER SEQRES 17 A 400 ARG PRO PHE ASN TYR GLN SER GLY GLN PHE ALA PHE LEU SEQRES 18 A 400 LYS ILE PHE GLN GLU GLY PHE GLU SER ALA PRO HIS PRO SEQRES 19 A 400 PHE SER ILE SER GLY GLY HIS GLY GLN THR LEU TYR PHE SEQRES 20 A 400 THR VAL LYS THR SER GLY ASP HIS THR LYS ASN ILE TYR SEQRES 21 A 400 ASP ASN LEU GLN ALA GLY SER LYS VAL THR LEU ASP ARG SEQRES 22 A 400 ALA TYR GLY HIS MET ILE ILE GLU GLU GLY ARG GLU ASN SEQRES 23 A 400 GLN VAL TRP ILE ALA GLY GLY ILE GLY ILE THR PRO PHE SEQRES 24 A 400 ILE SER TYR ILE ARG GLU HIS PRO ILE LEU ASP LYS GLN SEQRES 25 A 400 VAL HIS PHE TYR TYR SER PHE ARG GLY ASP GLU ASN ALA SEQRES 26 A 400 VAL TYR LEU ASP LEU LEU ARG ASN TYR ALA GLN LYS ASN SEQRES 27 A 400 PRO ASN PHE GLU LEU HIS LEU ILE ASP SER THR LYS ASP SEQRES 28 A 400 GLY TYR LEU ASN PHE GLU GLN LYS GLU VAL PRO GLU HIS SEQRES 29 A 400 ALA THR VAL TYR MET CYS GLY PRO ILE SER MET MET LYS SEQRES 30 A 400 ALA LEU ALA LYS GLN ILE LYS LYS GLN ASN PRO LYS THR SEQRES 31 A 400 GLU LEU ILE TYR GLU GLY TRP LYS PHE LYS HET FDA A1000 53 HET HEM A1001 43 HET HEM A1002 43 HETNAM FDA DIHYDROFLAVINE-ADENINE DINUCLEOTIDE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 FDA C27 H35 N9 O15 P2 FORMUL 3 HEM 2(C34 H32 FE N4 O4) HELIX 1 AA1 SER A 4 THR A 28 1 25 HELIX 2 AA2 ILE A 34 THR A 50 1 17 HELIX 3 AA3 LEU A 52 HIS A 60 1 9 HELIX 4 AA4 SER A 61 GLY A 88 1 28 HELIX 5 AA5 ALA A 96 ILE A 120 1 25 HELIX 6 AA6 TYR A 122 MET A 147 1 26 HELIX 7 AA7 MET A 147 LEU A 152 1 6 HELIX 8 AA8 ASN A 155 LEU A 178 1 24 HELIX 9 AA9 LEU A 178 PHE A 184 1 7 HELIX 10 AB1 GLY A 253 LEU A 263 1 11 HELIX 11 AB2 ILE A 296 GLU A 305 1 10 HELIX 12 AB3 TYR A 327 ASN A 338 1 12 HELIX 13 AB4 PRO A 372 ASN A 387 1 16 SHEET 1 AA1 6 TYR A 186 LEU A 196 0 SHEET 2 AA1 6 THR A 200 PHE A 211 -1 O HIS A 206 N LYS A 189 SHEET 3 AA1 6 HIS A 233 LYS A 250 -1 O LEU A 245 N ILE A 205 SHEET 4 AA1 6 PHE A 218 PHE A 224 -1 N ALA A 219 O PHE A 235 SHEET 5 AA1 6 LYS A 268 LEU A 271 -1 O THR A 270 N LYS A 222 SHEET 6 AA1 6 TYR A 186 LEU A 196 -1 N GLY A 188 O VAL A 269 SHEET 1 AA2 5 PHE A 341 ILE A 346 0 SHEET 2 AA2 5 VAL A 313 SER A 318 1 N TYR A 317 O ILE A 346 SHEET 3 AA2 5 GLN A 287 GLY A 292 1 N TRP A 289 O HIS A 314 SHEET 4 AA2 5 THR A 366 GLY A 371 1 O TYR A 368 N VAL A 288 SHEET 5 AA2 5 GLU A 391 GLY A 396 1 O ILE A 393 N VAL A 367 LINK NE2 HIS A 69 FE HEM A1002 1555 1555 2.08 LINK NE2 HIS A 83 FE HEM A1001 1555 1555 2.18 LINK NE2 HIS A 129 FE HEM A1002 1555 1555 2.09 LINK NE2 HIS A 142 FE HEM A1001 1555 1555 2.14 CRYST1 145.967 145.967 153.619 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006851 0.003955 0.000000 0.00000 SCALE2 0.000000 0.007911 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006510 0.00000