HEADER TRANSFERASE 04-OCT-23 8QQG TITLE STRUCTURE OF BRAF IN COMPLEX WITH EXARAFENIB (KIN-2787). COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PROTO-ONCOGENE B-RAF,P94,V-RAF MURINE SARCOMA VIRAL ONCOGENE COMPND 5 HOMOLOG B1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, BRAF EXPDTA X-RAY DIFFRACTION AUTHOR A.SCHMITT,E.COSTANZI,R.KANIA,Y.K.CHEN REVDAT 1 24-JAN-24 8QQG 0 JRNL AUTH A.SCHMITT,E.COSTANZI,R.KANIA,Y.K.CHEN JRNL TITL STRUCTURE OF BRAF IN COMPLEX WITH EXARAFENIB (KIN-2787). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 146.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 3 NUMBER OF REFLECTIONS : 28954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.771 REMARK 3 FREE R VALUE TEST SET COUNT : 522 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 310 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 13.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 4 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6388 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08900 REMARK 3 B22 (A**2) : -0.08900 REMARK 3 B33 (A**2) : 0.17800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.005 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.385 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.336 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.721 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6517 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6281 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8821 ; 1.349 ; 1.660 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14381 ; 1.083 ; 1.597 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 791 ; 6.736 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 320 ;31.668 ;21.563 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1149 ;14.571 ;15.144 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;12.905 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 849 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7255 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1516 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1012 ; 0.154 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 94 ; 0.157 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3071 ; 0.145 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 101 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3185 ; 2.608 ; 6.209 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3184 ; 2.606 ; 6.208 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3969 ; 4.655 ; 9.293 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3970 ; 4.655 ; 9.294 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3332 ; 1.934 ; 6.131 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3330 ; 1.934 ; 6.131 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4852 ; 3.590 ; 9.148 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4853 ; 3.590 ; 9.148 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 448 A 720 NULL REMARK 3 2 B 448 B 720 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 3 A 448 A 720 NULL REMARK 3 4 C 448 C 720 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 6 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 5 B 447 B 720 NULL REMARK 3 6 C 447 C 720 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8QQG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292133656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29475 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.979 REMARK 200 RESOLUTION RANGE LOW (A) : 146.214 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 15.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.13 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 6.7, 3.9 M NACL, 0.10 M REMARK 280 SCN, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 103.38900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 103.38900 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.69100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 103.38900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.34550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 103.38900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.03650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 103.38900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 112.03650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 103.38900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.34550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 103.38900 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 103.38900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.69100 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 103.38900 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 103.38900 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 74.69100 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 103.38900 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 112.03650 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 103.38900 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 37.34550 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 103.38900 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 37.34550 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 103.38900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 112.03650 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 103.38900 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 103.38900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 74.69100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 932 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 447 REMARK 465 THR A 487 REMARK 465 ALA A 488 REMARK 465 GLY A 595 REMARK 465 LEU A 596 REMARK 465 ALA A 597 REMARK 465 LYS B 600 REMARK 465 SER B 601 REMARK 465 ARG B 602 REMARK 465 TRP B 603 REMARK 465 SER B 604 REMARK 465 GLY B 605 REMARK 465 SER B 606 REMARK 465 HIS B 607 REMARK 465 GLN B 608 REMARK 465 PHE B 609 REMARK 465 GLU B 610 REMARK 465 GLN B 611 REMARK 465 PRO B 721 REMARK 465 VAL C 486 REMARK 465 THR C 487 REMARK 465 TRP C 603 REMARK 465 SER C 604 REMARK 465 GLY C 605 REMARK 465 SER C 606 REMARK 465 HIS C 607 REMARK 465 GLN C 608 REMARK 465 PRO C 721 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 450 CD OE1 OE2 REMARK 480 ASP A 453 CG OD1 OD2 REMARK 480 SER A 466 OG REMARK 480 LYS A 474 CE NZ REMARK 480 LEU A 484 CG CD1 CD2 REMARK 480 VAL A 486 CG1 CG2 REMARK 480 LYS A 498 CE NZ REMARK 480 LYS A 521 CD CE NZ REMARK 480 GLN A 523 CD OE1 NE2 REMARK 480 GLU A 532 CD OE1 OE2 REMARK 480 LYS A 546 CE NZ REMARK 480 LYS A 551 NZ REMARK 480 LYS A 600 CD CE NZ REMARK 480 GLN A 627 CG CD OE1 NE2 REMARK 480 ASP A 628 CG OD1 OD2 REMARK 480 LYS A 629 CG CD CE NZ REMARK 480 LYS A 686 CE NZ REMARK 480 LYS A 689 CE NZ REMARK 480 GLU A 694 CD OE1 OE2 REMARK 480 LYS A 698 CE NZ REMARK 480 LYS A 699 CE NZ REMARK 480 LEU A 720 CG CD1 CD2 REMARK 480 SER B 464 OG REMARK 480 GLN B 492 CD OE1 NE2 REMARK 480 LYS B 546 CE NZ REMARK 480 LYS B 551 CE NZ REMARK 480 GLN B 627 CD OE1 NE2 REMARK 480 LYS B 629 CD CE NZ REMARK 480 LYS B 679 CE NZ REMARK 480 LYS B 697 NZ REMARK 480 LYS B 699 CE NZ REMARK 480 GLU B 702 CD OE1 OE2 REMARK 480 ARG B 718 NE CZ NH1 NH2 REMARK 480 GLN C 492 CG CD OE1 NE2 REMARK 480 LEU C 494 CG CD1 CD2 REMARK 480 GLN C 495 CD OE1 NE2 REMARK 480 LYS C 498 CD CE NZ REMARK 480 LYS C 521 CD CE NZ REMARK 480 GLN C 523 CD OE1 NE2 REMARK 480 GLU C 532 CD OE1 OE2 REMARK 480 LYS C 546 CD CE NZ REMARK 480 GLU C 548 CD OE1 OE2 REMARK 480 THR C 598 OG1 CG2 REMARK 480 GLU C 610 CG CD OE1 OE2 REMARK 480 SER C 613 OG REMARK 480 MET C 626 SD CE REMARK 480 ASP C 628 CG OD1 OD2 REMARK 480 LYS C 629 CG CD CE NZ REMARK 480 LYS C 686 CE NZ REMARK 480 LYS C 689 NZ REMARK 480 GLU C 694 CD OE1 OE2 REMARK 480 LYS C 697 NZ REMARK 480 LYS C 699 CD CE NZ REMARK 480 GLU C 702 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 542 -71.03 -87.90 REMARK 500 ARG A 574 -13.79 83.78 REMARK 500 ASP A 575 49.48 -151.90 REMARK 500 LYS A 577 160.54 179.20 REMARK 500 LEU A 587 -67.17 -131.42 REMARK 500 VAL A 599 66.92 -109.41 REMARK 500 ARG A 602 -71.53 67.43 REMARK 500 HIS A 607 47.67 -108.58 REMARK 500 GLN A 611 -72.79 -66.66 REMARK 500 THR B 487 -158.45 -98.15 REMARK 500 ILE B 542 -70.38 -89.63 REMARK 500 ARG B 574 -12.03 84.22 REMARK 500 ASP B 575 47.66 -152.08 REMARK 500 LEU B 587 -66.21 -129.32 REMARK 500 ALA B 597 21.17 -144.23 REMARK 500 SER B 613 -151.01 -85.62 REMARK 500 PHE C 467 51.38 -108.79 REMARK 500 GLN C 523 58.90 72.96 REMARK 500 ILE C 542 -71.04 -89.42 REMARK 500 ARG C 574 -9.08 82.95 REMARK 500 ASP C 575 47.76 -154.92 REMARK 500 LEU C 587 -65.22 -131.92 REMARK 500 REMARK 500 REMARK: NULL DBREF 8QQG A 447 721 UNP P15056 BRAF_HUMAN 448 722 DBREF 8QQG B 447 721 UNP P15056 BRAF_HUMAN 448 722 DBREF 8QQG C 447 721 UNP P15056 BRAF_HUMAN 448 722 SEQRES 1 A 275 ASP ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL GLY SEQRES 2 A 275 GLN ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR LYS SEQRES 3 A 275 GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU ASN SEQRES 4 A 275 VAL THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE LYS SEQRES 5 A 275 ASN GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL ASN SEQRES 6 A 275 ILE LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN LEU SEQRES 7 A 275 ALA ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU TYR SEQRES 8 A 275 HIS HIS LEU HIS ILE ILE GLU THR LYS PHE GLU MET ILE SEQRES 9 A 275 LYS LEU ILE ASP ILE ALA ARG GLN THR ALA GLN GLY MET SEQRES 10 A 275 ASP TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP LEU SEQRES 11 A 275 LYS SER ASN ASN ILE PHE LEU HIS GLU ASP LEU THR VAL SEQRES 12 A 275 LYS ILE GLY ASP PHE GLY LEU ALA THR VAL LYS SER ARG SEQRES 13 A 275 TRP SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY SER SEQRES 14 A 275 ILE LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN ASP SEQRES 15 A 275 LYS ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA PHE SEQRES 16 A 275 GLY ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU PRO SEQRES 17 A 275 TYR SER ASN ILE ASN ASN ARG ASP GLN ILE ILE PHE MET SEQRES 18 A 275 VAL GLY ARG GLY TYR LEU SER PRO ASP LEU SER LYS VAL SEQRES 19 A 275 ARG SER ASN CYS PRO LYS ALA MET LYS ARG LEU MET ALA SEQRES 20 A 275 GLU CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO LEU PHE SEQRES 21 A 275 PRO GLN ILE LEU ALA SER ILE GLU LEU LEU ALA ARG SER SEQRES 22 A 275 LEU PRO SEQRES 1 B 275 ASP ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL GLY SEQRES 2 B 275 GLN ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR LYS SEQRES 3 B 275 GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU ASN SEQRES 4 B 275 VAL THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE LYS SEQRES 5 B 275 ASN GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL ASN SEQRES 6 B 275 ILE LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN LEU SEQRES 7 B 275 ALA ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU TYR SEQRES 8 B 275 HIS HIS LEU HIS ILE ILE GLU THR LYS PHE GLU MET ILE SEQRES 9 B 275 LYS LEU ILE ASP ILE ALA ARG GLN THR ALA GLN GLY MET SEQRES 10 B 275 ASP TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP LEU SEQRES 11 B 275 LYS SER ASN ASN ILE PHE LEU HIS GLU ASP LEU THR VAL SEQRES 12 B 275 LYS ILE GLY ASP PHE GLY LEU ALA THR VAL LYS SER ARG SEQRES 13 B 275 TRP SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY SER SEQRES 14 B 275 ILE LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN ASP SEQRES 15 B 275 LYS ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA PHE SEQRES 16 B 275 GLY ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU PRO SEQRES 17 B 275 TYR SER ASN ILE ASN ASN ARG ASP GLN ILE ILE PHE MET SEQRES 18 B 275 VAL GLY ARG GLY TYR LEU SER PRO ASP LEU SER LYS VAL SEQRES 19 B 275 ARG SER ASN CYS PRO LYS ALA MET LYS ARG LEU MET ALA SEQRES 20 B 275 GLU CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO LEU PHE SEQRES 21 B 275 PRO GLN ILE LEU ALA SER ILE GLU LEU LEU ALA ARG SER SEQRES 22 B 275 LEU PRO SEQRES 1 C 275 ASP ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL GLY SEQRES 2 C 275 GLN ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR LYS SEQRES 3 C 275 GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU ASN SEQRES 4 C 275 VAL THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE LYS SEQRES 5 C 275 ASN GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL ASN SEQRES 6 C 275 ILE LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN LEU SEQRES 7 C 275 ALA ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU TYR SEQRES 8 C 275 HIS HIS LEU HIS ILE ILE GLU THR LYS PHE GLU MET ILE SEQRES 9 C 275 LYS LEU ILE ASP ILE ALA ARG GLN THR ALA GLN GLY MET SEQRES 10 C 275 ASP TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP LEU SEQRES 11 C 275 LYS SER ASN ASN ILE PHE LEU HIS GLU ASP LEU THR VAL SEQRES 12 C 275 LYS ILE GLY ASP PHE GLY LEU ALA THR VAL LYS SER ARG SEQRES 13 C 275 TRP SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY SER SEQRES 14 C 275 ILE LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN ASP SEQRES 15 C 275 LYS ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA PHE SEQRES 16 C 275 GLY ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU PRO SEQRES 17 C 275 TYR SER ASN ILE ASN ASN ARG ASP GLN ILE ILE PHE MET SEQRES 18 C 275 VAL GLY ARG GLY TYR LEU SER PRO ASP LEU SER LYS VAL SEQRES 19 C 275 ARG SER ASN CYS PRO LYS ALA MET LYS ARG LEU MET ALA SEQRES 20 C 275 GLU CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO LEU PHE SEQRES 21 C 275 PRO GLN ILE LEU ALA SER ILE GLU LEU LEU ALA ARG SER SEQRES 22 C 275 LEU PRO HET WJ9 A 801 37 HET CL A 802 1 HET CL A 803 1 HET CL A 804 1 HET WJ9 B 801 37 HET CL B 802 1 HET CL B 803 1 HET WJ9 C 801 37 HET CL C 802 1 HET CL C 803 1 HETNAM WJ9 (3~{S})-~{N}-[4-METHYL-3-[2-MORPHOLIN-4-YL-6-[[(2~{R})- HETNAM 2 WJ9 1-OXIDANYLPROPAN-2-YL]AMINO]PYRIDIN-4-YL]PHENYL]-3-[2, HETNAM 3 WJ9 2,2-TRIS(FLUORANYL)ETHYL]PYRROLIDINE-1-CARBOXAMIDE HETNAM CL CHLORIDE ION FORMUL 4 WJ9 3(C26 H34 F3 N5 O3) FORMUL 5 CL 7(CL 1-) FORMUL 14 HOH *80(H2 O) HELIX 1 AA1 THR A 490 ARG A 505 1 16 HELIX 2 AA2 LEU A 536 ILE A 542 1 7 HELIX 3 AA3 GLU A 548 LYS A 569 1 22 HELIX 4 AA4 LYS A 577 ASN A 579 5 3 HELIX 5 AA5 ALA A 620 MET A 626 1 7 HELIX 6 AA6 SER A 633 GLY A 651 1 19 HELIX 7 AA7 ASN A 660 ARG A 670 1 11 HELIX 8 AA8 ASP A 676 VAL A 680 5 5 HELIX 9 AA9 PRO A 685 LEU A 696 1 12 HELIX 10 AB1 LEU A 705 SER A 719 1 15 HELIX 11 AB2 THR B 490 ARG B 505 1 16 HELIX 12 AB3 LEU B 536 ILE B 542 1 7 HELIX 13 AB4 GLU B 548 LYS B 569 1 22 HELIX 14 AB5 ALA B 620 MET B 626 1 7 HELIX 15 AB6 SER B 633 GLY B 651 1 19 HELIX 16 AB7 ASN B 660 ARG B 670 1 11 HELIX 17 AB8 ASP B 676 VAL B 680 5 5 HELIX 18 AB9 PRO B 685 LEU B 696 1 12 HELIX 19 AC1 LEU B 705 SER B 719 1 15 HELIX 20 AC2 THR C 490 ARG C 505 1 16 HELIX 21 AC3 LEU C 536 ILE C 542 1 7 HELIX 22 AC4 GLU C 548 LYS C 569 1 22 HELIX 23 AC5 LYS C 577 ASN C 579 5 3 HELIX 24 AC6 ALA C 620 MET C 626 1 7 HELIX 25 AC7 SER C 633 GLY C 651 1 19 HELIX 26 AC8 ASN C 660 ARG C 670 1 11 HELIX 27 AC9 ASP C 676 VAL C 680 5 5 HELIX 28 AD1 PRO C 685 LEU C 696 1 12 HELIX 29 AD2 LEU C 705 SER C 719 1 15 SHEET 1 AA1 5 THR A 457 GLY A 463 0 SHEET 2 AA1 5 THR A 469 LYS A 474 -1 O VAL A 470 N GLY A 463 SHEET 3 AA1 5 ASP A 478 MET A 483 -1 O MET A 483 N THR A 469 SHEET 4 AA1 5 ALA A 525 GLN A 529 -1 O ILE A 526 N LYS A 482 SHEET 5 AA1 5 PHE A 515 SER A 519 -1 N GLY A 517 O VAL A 527 SHEET 1 AA2 3 GLY A 533 SER A 535 0 SHEET 2 AA2 3 ILE A 581 HIS A 584 -1 O LEU A 583 N SER A 534 SHEET 3 AA2 3 THR A 588 ILE A 591 -1 O THR A 588 N HIS A 584 SHEET 1 AA3 5 THR B 457 GLY B 465 0 SHEET 2 AA3 5 GLY B 468 LYS B 474 -1 O LYS B 472 N GLN B 460 SHEET 3 AA3 5 ASP B 478 MET B 483 -1 O MET B 483 N THR B 469 SHEET 4 AA3 5 ALA B 525 GLN B 529 -1 O ILE B 526 N LYS B 482 SHEET 5 AA3 5 PHE B 515 SER B 519 -1 N GLY B 517 O VAL B 527 SHEET 1 AA4 3 GLY B 533 SER B 535 0 SHEET 2 AA4 3 ILE B 581 HIS B 584 -1 O LEU B 583 N SER B 534 SHEET 3 AA4 3 THR B 588 ILE B 591 -1 O THR B 588 N HIS B 584 SHEET 1 AA5 5 THR C 457 GLY C 465 0 SHEET 2 AA5 5 GLY C 468 LYS C 474 -1 O LYS C 472 N GLN C 460 SHEET 3 AA5 5 ASP C 478 MET C 483 -1 O MET C 483 N THR C 469 SHEET 4 AA5 5 ALA C 525 GLN C 529 -1 O ILE C 526 N LYS C 482 SHEET 5 AA5 5 PHE C 515 SER C 519 -1 N GLY C 517 O VAL C 527 SHEET 1 AA6 3 GLY C 533 SER C 535 0 SHEET 2 AA6 3 ILE C 581 HIS C 584 -1 O LEU C 583 N SER C 534 SHEET 3 AA6 3 THR C 588 ILE C 591 -1 O THR C 588 N HIS C 584 CISPEP 1 LYS A 521 PRO A 522 0 1.46 CISPEP 2 LYS B 521 PRO B 522 0 14.11 CRYST1 206.778 206.778 149.382 90.00 90.00 90.00 I 41 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004836 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004836 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006694 0.00000