HEADER CELL CYCLE 11-OCT-23 8QSV TITLE CRYSTAL STRUCTURE OF SPOUT1/CENP-32 BOUND TO SAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE METHYLTRANSFERASE C9ORF114; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPOUT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEC-K-HIS-3C KEYWDS SPOUT RNA METHYLTRANSFERASE SPINDLE ORGANISATION CHROMOSOME KEYWDS 2 MISSEGREGATION CELL VIABILITY, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.JEYAPRAKASH,M.A.ABAD REVDAT 3 28-MAY-25 8QSV 1 JRNL REVDAT 2 26-MAR-25 8QSV 1 TITLE REVDAT 1 23-OCT-24 8QSV 0 JRNL AUTH A.V.DHARMADHIKARI,M.A.ABAD,S.KHAN,R.MAROOFIAN,T.T.SANDS, JRNL AUTH 2 F.ULLAH,I.SAMEJIMA,Y.SHEN,M.A.WEAR,K.E.MOORE,E.KONDAKOVA, JRNL AUTH 3 N.MITINA,T.SCHAUB,G.K.LEE,C.H.UMANDAP,S.M.BERGER, JRNL AUTH 4 A.D.IGLESIAS,B.POPP,R.ABOU JAMRA,H.GABRIEL,S.RENTAS, JRNL AUTH 5 A.L.RIPPERT,C.GRAY,K.IZUMI,L.K.CONLIN,D.C.KOBOLDT, JRNL AUTH 6 T.M.MOSHER,S.E.HICKEY,D.V.F.ALBERT,H.NORWOOD,A.F.LEWANDA, JRNL AUTH 7 H.DAI,P.LIU,T.MITANI,D.MARAFI,H.K.EKER,D.PEHLIVAN,J.E.POSEY, JRNL AUTH 8 N.C.LIPPA,N.VENA,E.L.HEINZEN,D.B.GOLDSTEIN,C.MIGNOT, JRNL AUTH 9 J.M.DE SAINTE AGATHE,N.A.AL-SANNAA,M.ZAMANI,S.SADEGHIAN, JRNL AUTH10 R.AZIZIMALAMIRI,T.SEIFIA,M.S.ZAKI,G.M.H.ABDEL-SALAM, JRNL AUTH11 M.S.ABDEL-HAMID,L.ALABDI,F.S.ALKURAYA,H.DAWOUD,A.LOFTY, JRNL AUTH12 P.BAUER,G.ZIFARELLI,E.AFZAL,F.ZAFAR,S.EFTHYMIOU,D.GOSSETT, JRNL AUTH13 M.C.TOWNE,R.YENEABAT,B.PEREZ-DUENAS,A.CAZURRO-GUTIERREZ, JRNL AUTH14 E.VERDURA,V.CANTARIN-EXTREMERA,A.D.V.MARQUES,A.HELWAK, JRNL AUTH15 D.TOLLERVEY,S.N.WONTAKAL,V.S.AGGARWAL,J.A.ROSENFELD, JRNL AUTH16 V.TARABYKIN,S.OHTA,J.R.LUPSKI,H.HOULDEN,W.C.EARNSHAW, JRNL AUTH17 E.E.DAVIS,A.A.JEYAPRAKASH,J.LIAO JRNL TITL RNA METHYLTRANSFERASE SPOUT1/CENP-32 LINKS MITOTIC SPINDLE JRNL TITL 2 ORGANIZATION WITH THE NEURODEVELOPMENTAL DISORDER SPADMISS. JRNL REF NAT COMMUN V. 16 1703 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 39962046 JRNL DOI 10.1038/S41467-025-56876-W REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 12000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 628 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 829 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3850 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.4120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2151 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.02000 REMARK 3 B22 (A**2) : 3.72000 REMARK 3 B33 (A**2) : -7.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.442 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.319 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.284 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.153 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2226 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2081 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3029 ; 1.583 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4785 ; 0.524 ; 1.566 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 280 ; 7.886 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 16 ;10.633 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 336 ;18.501 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2648 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 509 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1129 ; 4.375 ; 4.754 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1129 ; 4.376 ; 4.754 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1406 ; 6.573 ; 8.549 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1407 ; 6.571 ; 8.551 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1097 ; 4.783 ; 5.144 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1097 ; 4.781 ; 5.145 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1624 ; 7.166 ; 9.306 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2391 ; 9.332 ;45.870 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2392 ; 9.330 ;45.900 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 372 REMARK 3 ORIGIN FOR THE GROUP (A): -16.3715 -3.2246 -16.7293 REMARK 3 T TENSOR REMARK 3 T11: 0.0624 T22: 0.2876 REMARK 3 T33: 0.0925 T12: -0.0851 REMARK 3 T13: -0.0122 T23: 0.0695 REMARK 3 L TENSOR REMARK 3 L11: 2.6462 L22: 4.3836 REMARK 3 L33: 6.3294 L12: -0.8051 REMARK 3 L13: -0.8135 L23: 3.2325 REMARK 3 S TENSOR REMARK 3 S11: -0.1092 S12: 0.4997 S13: -0.1831 REMARK 3 S21: -0.3404 S22: 0.2540 S23: 0.0039 REMARK 3 S31: -0.0462 S32: -0.0811 S33: -0.1449 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8QSV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292133584. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12626 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.620 REMARK 200 RESOLUTION RANGE LOW (A) : 55.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08553 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.66340 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.06 M MGCL2, CACL2 OR 0.09 M NAF, REMARK 280 NABR, NAI WITH 0.1 M IMIDAZOLE, MES (ACID) PH 6.5 AND 30 % REMARK 280 ETHYLENE GLYCOL, PEG 8K, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.84500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.84500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.53500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.41500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.53500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.41500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.84500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.53500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.41500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.84500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.53500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.41500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 70 REMARK 465 ARG A 71 REMARK 465 GLY A 119 REMARK 465 GLN A 120 REMARK 465 ASP A 121 REMARK 465 ALA A 122 REMARK 465 LYS A 123 REMARK 465 THR A 124 REMARK 465 VAL A 125 REMARK 465 GLU A 126 REMARK 465 GLY A 127 REMARK 465 GLU A 128 REMARK 465 PHE A 129 REMARK 465 THR A 130 REMARK 465 GLY A 131 REMARK 465 VAL A 132 REMARK 465 GLY A 133 REMARK 465 LYS A 134 REMARK 465 LYS A 135 REMARK 465 GLY A 136 REMARK 465 GLN A 137 REMARK 465 ALA A 373 REMARK 465 ARG A 374 REMARK 465 HIS A 375 REMARK 465 THR A 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 GLN A 164 CG CD OE1 NE2 REMARK 470 VAL A 215 CG1 REMARK 470 GLN A 234 CG CD OE1 NE2 REMARK 470 CYS A 239 SG REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 GLN A 280 CG CD OE1 NE2 REMARK 470 ASP A 284 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 202 CA GLY A 202 C 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 171 33.71 -73.31 REMARK 500 GLN A 183 -78.53 -27.39 REMARK 500 ASP A 184 -68.65 -7.16 REMARK 500 VAL A 195 174.21 -54.55 REMARK 500 PRO A 201 110.07 -35.89 REMARK 500 ASN A 232 -98.55 -72.33 REMARK 500 GLN A 233 128.25 123.14 REMARK 500 PRO A 237 73.71 -60.93 REMARK 500 CYS A 239 88.07 -44.40 REMARK 500 LYS A 240 50.38 38.00 REMARK 500 GLU A 276 32.21 -89.24 REMARK 500 SER A 290 146.76 -177.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 172 ASN A 173 142.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 93 0.11 SIDE CHAIN REMARK 500 ARG A 265 0.09 SIDE CHAIN REMARK 500 ARG A 292 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8QSV A 71 376 UNP Q5T280 CI114_HUMAN 71 376 SEQADV 8QSV MSE A 70 UNP Q5T280 INITIATING METHIONINE SEQRES 1 A 307 MSE ARG PRO TYR THR LEU SER VAL ALA LEU PRO GLY SER SEQRES 2 A 307 ILE LEU ASP ASN ALA GLN SER PRO GLU LEU ARG THR TYR SEQRES 3 A 307 LEU ALA GLY GLN ILE ALA ARG ALA CYS ALA ILE PHE CYS SEQRES 4 A 307 VAL ASP GLU ILE VAL VAL PHE ASP GLU GLU GLY GLN ASP SEQRES 5 A 307 ALA LYS THR VAL GLU GLY GLU PHE THR GLY VAL GLY LYS SEQRES 6 A 307 LYS GLY GLN ALA CYS VAL GLN LEU ALA ARG ILE LEU GLN SEQRES 7 A 307 TYR LEU GLU CYS PRO GLN TYR LEU ARG LYS ALA PHE PHE SEQRES 8 A 307 PRO LYS HIS GLN ASP LEU GLN PHE ALA GLY LEU LEU ASN SEQRES 9 A 307 PRO LEU ASP SER PRO HIS HIS MSE ARG GLN ASP GLU GLU SEQRES 10 A 307 SER GLU PHE ARG GLU GLY ILE VAL VAL ASP ARG PRO THR SEQRES 11 A 307 ARG PRO GLY HIS GLY SER PHE VAL ASN CYS GLY MSE LYS SEQRES 12 A 307 LYS GLU VAL LYS ILE ASP LYS ASN LEU GLU PRO GLY LEU SEQRES 13 A 307 ARG VAL THR VAL ARG LEU ASN GLN GLN GLN HIS PRO ASP SEQRES 14 A 307 CYS LYS THR TYR HIS GLY LYS VAL VAL SER SER GLN ASP SEQRES 15 A 307 PRO ARG THR LYS ALA GLY LEU TYR TRP GLY TYR THR VAL SEQRES 16 A 307 ARG LEU ALA SER CYS LEU SER ALA VAL PHE ALA GLU ALA SEQRES 17 A 307 PRO PHE GLN ASP GLY TYR ASP LEU THR ILE GLY THR SER SEQRES 18 A 307 GLU ARG GLY SER ASP VAL ALA SER ALA GLN LEU PRO ASN SEQRES 19 A 307 PHE ARG HIS ALA LEU VAL VAL PHE GLY GLY LEU GLN GLY SEQRES 20 A 307 LEU GLU ALA GLY ALA ASP ALA ASP PRO ASN LEU GLU VAL SEQRES 21 A 307 ALA GLU PRO SER VAL LEU PHE ASP LEU TYR VAL ASN THR SEQRES 22 A 307 CYS PRO GLY GLN GLY SER ARG THR ILE ARG THR GLU GLU SEQRES 23 A 307 ALA ILE LEU ILE SER LEU ALA ALA LEU GLN PRO GLY LEU SEQRES 24 A 307 ILE GLN ALA GLY ALA ARG HIS THR MODRES 8QSV MSE A 181 MET MODIFIED RESIDUE MODRES 8QSV MSE A 211 MET MODIFIED RESIDUE HET MSE A 181 8 HET MSE A 211 8 HET SAM A 401 27 HETNAM MSE SELENOMETHIONINE HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 HOH *2(H2 O) HELIX 1 AA1 SER A 82 ALA A 87 5 6 HELIX 2 AA2 SER A 89 PHE A 107 1 19 HELIX 3 AA3 CYS A 139 CYS A 151 1 13 HELIX 4 AA4 PRO A 152 TYR A 154 5 3 HELIX 5 AA5 LEU A 155 PHE A 160 1 6 HELIX 6 AA6 HIS A 163 GLN A 167 5 5 HELIX 7 AA7 GLN A 250 LYS A 255 1 6 HELIX 8 AA8 CYS A 269 GLU A 276 1 8 HELIX 9 AA9 LEU A 317 ASP A 324 1 8 HELIX 10 AB1 GLU A 331 PHE A 336 5 6 HELIX 11 AB2 ARG A 352 GLY A 372 1 21 SHEET 1 AA1 7 THR A 263 ALA A 267 0 SHEET 2 AA1 7 GLU A 111 PHE A 115 1 N VAL A 114 O ARG A 265 SHEET 3 AA1 7 THR A 74 PRO A 80 1 N VAL A 77 O VAL A 113 SHEET 4 AA1 7 HIS A 306 VAL A 310 1 O ALA A 307 N SER A 76 SHEET 5 AA1 7 LEU A 285 THR A 289 1 N ILE A 287 O VAL A 310 SHEET 6 AA1 7 LEU A 338 ASN A 341 1 O LEU A 338 N GLY A 288 SHEET 7 AA1 7 SER A 294 ASP A 295 1 N SER A 294 O ASN A 341 SHEET 1 AA2 6 PHE A 189 VAL A 194 0 SHEET 2 AA2 6 PHE A 206 ASN A 208 -1 O ASN A 208 N ILE A 193 SHEET 3 AA2 6 VAL A 215 LYS A 216 -1 O VAL A 215 N VAL A 207 SHEET 4 AA2 6 TYR A 242 VAL A 247 1 O TYR A 242 N LYS A 216 SHEET 5 AA2 6 ARG A 226 LEU A 231 -1 N ARG A 230 O LYS A 245 SHEET 6 AA2 6 PHE A 189 VAL A 194 -1 N GLY A 192 O VAL A 227 LINK C HIS A 180 N MSE A 181 1555 1555 1.34 LINK C MSE A 181 N ARG A 182 1555 1555 1.34 LINK C GLY A 210 N MSE A 211 1555 1555 1.34 LINK C MSE A 211 N LYS A 212 1555 1555 1.34 CRYST1 75.070 80.830 135.690 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013321 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007370 0.00000 CONECT 696 704 CONECT 704 696 705 CONECT 705 704 706 708 CONECT 706 705 707 712 CONECT 707 706 CONECT 708 705 709 CONECT 709 708 710 CONECT 710 709 711 CONECT 711 710 CONECT 712 706 CONECT 939 941 CONECT 941 939 942 CONECT 942 941 943 945 CONECT 943 942 944 949 CONECT 944 943 CONECT 945 942 946 CONECT 946 945 947 CONECT 947 946 948 CONECT 948 947 CONECT 949 943 CONECT 2153 2154 CONECT 2154 2153 2155 2158 CONECT 2155 2154 2156 2157 CONECT 2156 2155 CONECT 2157 2155 CONECT 2158 2154 2159 CONECT 2159 2158 2160 CONECT 2160 2159 2161 2162 CONECT 2161 2160 CONECT 2162 2160 2163 CONECT 2163 2162 2164 2165 CONECT 2164 2163 2169 CONECT 2165 2163 2166 2167 CONECT 2166 2165 CONECT 2167 2165 2168 2169 CONECT 2168 2167 CONECT 2169 2164 2167 2170 CONECT 2170 2169 2171 2179 CONECT 2171 2170 2172 CONECT 2172 2171 2173 CONECT 2173 2172 2174 2179 CONECT 2174 2173 2175 2176 CONECT 2175 2174 CONECT 2176 2174 2177 CONECT 2177 2176 2178 CONECT 2178 2177 2179 CONECT 2179 2170 2173 2178 MASTER 402 0 3 11 13 0 0 6 2180 1 47 24 END