HEADER CELL CYCLE 11-OCT-23 8QSW TITLE BI-ALLELIC VARIANTS OF SPOUT1, A NOVEL RNA METHYLTRANSFERASE, CAUSE TITLE 2 CHROMOSOME MISSEGREGATION AND A RARE NEURODEVELOPMENTAL DISEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE METHYLTRANSFERASE C9ORF114; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPOUT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEC-K-HIS-3C KEYWDS SPOUT RNA METHYLTRANSFERASE SPINDLE ORGANISATION CHROMOSOME KEYWDS 2 MISSEGREGATION CELL VIABILITY CELL CYCLE, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.JEYAPRAKASH,M.A.ABAD REVDAT 1 23-OCT-24 8QSW 0 JRNL AUTH A.A.JEYAPRAKASH,M.A.ABAD JRNL TITL BI-ALLELIC MUTANTS OF SPOUT1, A NOVEL RNA METHYLTRANSFERASE, JRNL TITL 2 CAUSE CHROMOSOME MISSEGREGATION AND A RARE JRNL TITL 3 NEURODEVELOPMENTAL DISEASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 13609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 711 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 975 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.4390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.83000 REMARK 3 B22 (A**2) : 5.58000 REMARK 3 B33 (A**2) : -7.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.353 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.253 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.116 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2250 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2115 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3056 ; 1.701 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4865 ; 0.575 ; 1.568 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 284 ; 8.163 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 17 ; 9.490 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 360 ;17.198 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 339 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2705 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 523 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1142 ; 4.819 ; 5.064 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1142 ; 4.816 ; 5.063 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1424 ; 7.104 ; 9.094 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1425 ; 7.101 ; 9.093 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1108 ; 5.513 ; 5.604 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1109 ; 5.510 ; 5.603 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1633 ; 8.094 ;10.056 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2385 ;10.353 ;48.800 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2386 ;10.351 ;48.790 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 373 REMARK 3 ORIGIN FOR THE GROUP (A): -16.5668 -3.0888 -16.9173 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.1399 REMARK 3 T33: 0.0504 T12: -0.0924 REMARK 3 T13: -0.0187 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 3.1262 L22: 4.0946 REMARK 3 L33: 5.3945 L12: -1.0129 REMARK 3 L13: -0.8437 L23: 2.3887 REMARK 3 S TENSOR REMARK 3 S11: -0.1456 S12: 0.4024 S13: -0.0730 REMARK 3 S21: -0.3347 S22: 0.3006 S23: -0.0937 REMARK 3 S31: -0.1195 S32: 0.1973 S33: -0.1550 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8QSW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292133623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14321 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 37.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.06425 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46950 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.09 M NAF, NABR, NAI; 0.1 M SODIUM REMARK 280 HEPES, MOPS (ACID) PH 7.5 AND 30 % ETHYLENE GLYCOL, PEG 8K, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.18150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.18150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.62000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.34700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.62000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.34700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.18150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.62000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.34700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.18150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.62000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.34700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 70 REMARK 465 GLY A 119 REMARK 465 GLN A 120 REMARK 465 ASP A 121 REMARK 465 ALA A 122 REMARK 465 LYS A 123 REMARK 465 THR A 124 REMARK 465 VAL A 125 REMARK 465 GLU A 126 REMARK 465 GLY A 127 REMARK 465 GLU A 128 REMARK 465 PHE A 129 REMARK 465 THR A 130 REMARK 465 GLY A 131 REMARK 465 VAL A 132 REMARK 465 GLY A 133 REMARK 465 LYS A 134 REMARK 465 LYS A 135 REMARK 465 ARG A 374 REMARK 465 HIS A 375 REMARK 465 THR A 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 157 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 202 CA GLY A 202 C 0.161 REMARK 500 GLY A 202 C GLY A 202 O 0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 117 42.42 -77.49 REMARK 500 PRO A 152 155.67 -49.68 REMARK 500 LEU A 171 31.04 -76.05 REMARK 500 ASP A 196 76.35 -100.58 REMARK 500 THR A 199 169.62 85.79 REMARK 500 GLU A 214 157.48 -45.70 REMARK 500 HIS A 236 114.01 -35.59 REMARK 500 ASP A 281 -64.82 -6.64 REMARK 500 GLU A 331 142.42 -170.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 202 HIS A 203 -142.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 93 0.12 SIDE CHAIN REMARK 500 ARG A 352 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 202 13.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 8QSW A 71 376 UNP Q5T280 CI114_HUMAN 71 376 SEQADV 8QSW MET A 70 UNP Q5T280 INITIATING METHIONINE SEQADV 8QSW ASN A 356 UNP Q5T280 ALA 356 CONFLICT SEQRES 1 A 307 MET ARG PRO TYR THR LEU SER VAL ALA LEU PRO GLY SER SEQRES 2 A 307 ILE LEU ASP ASN ALA GLN SER PRO GLU LEU ARG THR TYR SEQRES 3 A 307 LEU ALA GLY GLN ILE ALA ARG ALA CYS ALA ILE PHE CYS SEQRES 4 A 307 VAL ASP GLU ILE VAL VAL PHE ASP GLU GLU GLY GLN ASP SEQRES 5 A 307 ALA LYS THR VAL GLU GLY GLU PHE THR GLY VAL GLY LYS SEQRES 6 A 307 LYS GLY GLN ALA CYS VAL GLN LEU ALA ARG ILE LEU GLN SEQRES 7 A 307 TYR LEU GLU CYS PRO GLN TYR LEU ARG LYS ALA PHE PHE SEQRES 8 A 307 PRO LYS HIS GLN ASP LEU GLN PHE ALA GLY LEU LEU ASN SEQRES 9 A 307 PRO LEU ASP SER PRO HIS HIS MET ARG GLN ASP GLU GLU SEQRES 10 A 307 SER GLU PHE ARG GLU GLY ILE VAL VAL ASP ARG PRO THR SEQRES 11 A 307 ARG PRO GLY HIS GLY SER PHE VAL ASN CYS GLY MET LYS SEQRES 12 A 307 LYS GLU VAL LYS ILE ASP LYS ASN LEU GLU PRO GLY LEU SEQRES 13 A 307 ARG VAL THR VAL ARG LEU ASN GLN GLN GLN HIS PRO ASP SEQRES 14 A 307 CYS LYS THR TYR HIS GLY LYS VAL VAL SER SER GLN ASP SEQRES 15 A 307 PRO ARG THR LYS ALA GLY LEU TYR TRP GLY TYR THR VAL SEQRES 16 A 307 ARG LEU ALA SER CYS LEU SER ALA VAL PHE ALA GLU ALA SEQRES 17 A 307 PRO PHE GLN ASP GLY TYR ASP LEU THR ILE GLY THR SER SEQRES 18 A 307 GLU ARG GLY SER ASP VAL ALA SER ALA GLN LEU PRO ASN SEQRES 19 A 307 PHE ARG HIS ALA LEU VAL VAL PHE GLY GLY LEU GLN GLY SEQRES 20 A 307 LEU GLU ALA GLY ALA ASP ALA ASP PRO ASN LEU GLU VAL SEQRES 21 A 307 ALA GLU PRO SER VAL LEU PHE ASP LEU TYR VAL ASN THR SEQRES 22 A 307 CYS PRO GLY GLN GLY SER ARG THR ILE ARG THR GLU GLU SEQRES 23 A 307 ASN ILE LEU ILE SER LEU ALA ALA LEU GLN PRO GLY LEU SEQRES 24 A 307 ILE GLN ALA GLY ALA ARG HIS THR FORMUL 2 HOH *(H2 O) HELIX 1 AA1 SER A 82 ALA A 87 5 6 HELIX 2 AA2 SER A 89 PHE A 107 1 19 HELIX 3 AA3 GLN A 137 CYS A 151 1 15 HELIX 4 AA4 PRO A 152 TYR A 154 5 3 HELIX 5 AA5 LEU A 155 PHE A 160 1 6 HELIX 6 AA6 PHE A 168 LEU A 172 5 5 HELIX 7 AA7 GLN A 250 GLY A 257 1 8 HELIX 8 AA8 CYS A 269 GLU A 276 1 8 HELIX 9 AA9 ALA A 297 ALA A 299 5 3 HELIX 10 AB1 GLU A 318 ALA A 323 1 6 HELIX 11 AB2 GLU A 331 PHE A 336 5 6 HELIX 12 AB3 ARG A 352 GLY A 372 1 21 SHEET 1 AA1 7 THR A 263 ALA A 267 0 SHEET 2 AA1 7 GLU A 111 PHE A 115 1 N ILE A 112 O THR A 263 SHEET 3 AA1 7 THR A 74 PRO A 80 1 N VAL A 77 O VAL A 113 SHEET 4 AA1 7 HIS A 306 VAL A 310 1 O VAL A 309 N SER A 76 SHEET 5 AA1 7 LEU A 285 THR A 289 1 N ILE A 287 O VAL A 310 SHEET 6 AA1 7 LEU A 338 ASN A 341 1 O VAL A 340 N GLY A 288 SHEET 7 AA1 7 SER A 294 ASP A 295 1 N SER A 294 O TYR A 339 SHEET 1 AA2 6 PHE A 189 VAL A 194 0 SHEET 2 AA2 6 PHE A 206 ASN A 208 -1 O ASN A 208 N ILE A 193 SHEET 3 AA2 6 VAL A 215 LYS A 216 -1 O VAL A 215 N VAL A 207 SHEET 4 AA2 6 TYR A 242 VAL A 247 1 O TYR A 242 N LYS A 216 SHEET 5 AA2 6 ARG A 226 LEU A 231 -1 N ARG A 230 O LYS A 245 SHEET 6 AA2 6 PHE A 189 VAL A 194 -1 N GLY A 192 O VAL A 227 CRYST1 75.240 80.694 136.363 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013291 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012392 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007333 0.00000