HEADER BIOSYNTHETIC PROTEIN 11-OCT-23 8QSX TITLE SOLUTION NMR STRUCTURE OF THE NOVEL ADAPTOR DOMAIN TOMBN91 FROM THE TITLE 2 TOMAYMYCIN NON-RIBOSOMAL PEPTIDE SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOMBN91; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: FIRST FOUR RESIDUES (GPML) IN THE PROTEIN ARE FROM COMPND 6 CLONING ARTIFACTS. THEREFORE, THE APPROPRIATE RESIDUE NUMBERING HAS COMPND 7 THE FIRST RESIDUE (G) DESIGNATED AS RESIDUE-NUMBER '-3', SO THAT THE COMPND 8 FIFTH RESIDUE HAS RESIDUE-NUMBER '1'. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES REGENSIS; SOURCE 3 ORGANISM_TAXID: 68263; SOURCE 4 VARIANT: FH6421; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NON-RIBOSOMAL PEPTIDE SYNTHETASE, NRPS, TOMAYMYCIN, NOVEL PROTEIN, KEYWDS 2 ADAPTOR PROTEIN, BIOSYNTHETIC PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.N.KARANTH,J.P.KIRKPATRICK,T.CARLOMAGNO REVDAT 2 03-JUL-24 8QSX 1 JRNL REVDAT 1 26-JUN-24 8QSX 0 JRNL AUTH M.N.KARANTH,J.P.KIRKPATRICK,J.KRAUSZE,S.SCHMELZ,A.SCRIMA, JRNL AUTH 2 T.CARLOMAGNO JRNL TITL THE SPECIFICITY OF INTERMODULAR RECOGNITION IN A JRNL TITL 2 PROTOTYPICAL NONRIBOSOMAL PEPTIDE SYNTHETASE DEPENDS ON AN JRNL TITL 3 ADAPTOR DOMAIN. JRNL REF SCI ADV V. 10 M9404 2024 JRNL REFN ESSN 2375-2548 JRNL PMID 38896613 JRNL DOI 10.1126/SCIADV.ADM9404 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.21, CNS 1.21, CNS 1.21 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QSX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292132850. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 265 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 500 UM [U-13C; U-15N] NON REMARK 210 -RIBOSOMAL PROTEIN TOMBN91, 50 REMARK 210 MM SODIUM PHOSPHATE, 150 MM REMARK 210 SODIUM CHLORIDE, 1 MM TCEP, 0.02 REMARK 210 % W/V SODIUM AZIDE, 10 % V/V [U- REMARK 210 2H] D2O, 90% H2O/10% D2O; 800 UM REMARK 210 [U-13C; U-15N] TOMBN91, 50 MM REMARK 210 SODIUM PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 1 MM TCEP, 0.02 % W/V REMARK 210 SODIUM AZIDE, 10 % V/V [U-2H] REMARK 210 D2O, 90% H2O/10% D2O; 300 UM [U- REMARK 210 15N] TOMBN91, 50 MM SODIUM REMARK 210 PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 1 MM TCEP, 0.02 % W/V REMARK 210 SODIUM AZIDE, 10 V/V [U-2H] D2O, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(COCA)CB; 3D HN(CO)CA; 3D HCCH- REMARK 210 TOCSY; 3D TOCSY-HSQC; 3D HBHA(CO) REMARK 210 NH; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, CCPNMR REMARK 210 ANALYSIS, CCPNMR ANALYSIS 2.4, REMARK 210 ARIA 2.3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 3 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 43 HG1 THR A 46 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 20 -70.85 -81.95 REMARK 500 1 PRO A 35 -19.32 -43.45 REMARK 500 1 PRO A 81 -9.64 -54.37 REMARK 500 1 GLU A 82 37.43 -81.72 REMARK 500 2 ALA A 20 -73.68 -81.70 REMARK 500 2 PRO A 35 -30.32 -31.90 REMARK 500 2 LEU A 83 32.26 -158.94 REMARK 500 3 PRO A 35 -19.77 -45.39 REMARK 500 3 PRO A 81 -6.48 -56.80 REMARK 500 3 ARG A 90 64.15 68.64 REMARK 500 4 PRO A 78 125.42 -39.83 REMARK 500 4 LEU A 83 41.40 -161.52 REMARK 500 5 THR A 23 -70.16 -84.42 REMARK 500 5 ALA A 24 -69.50 -167.65 REMARK 500 5 PRO A 35 -18.38 -48.83 REMARK 500 5 LEU A 83 113.82 74.57 REMARK 500 6 ALA A 20 -73.75 -91.69 REMARK 500 6 PRO A 35 -19.17 -47.72 REMARK 500 6 GLU A 82 75.78 -106.56 REMARK 500 6 LEU A 83 98.00 68.99 REMARK 500 7 MET A 1 35.36 -85.93 REMARK 500 7 PRO A 35 -38.66 -29.41 REMARK 500 7 PRO A 81 -9.15 -58.05 REMARK 500 7 LEU A 83 73.85 49.89 REMARK 500 8 MET A 1 36.58 -86.88 REMARK 500 8 ALA A 20 -78.69 -67.77 REMARK 500 8 HIS A 25 -158.24 -137.14 REMARK 500 8 GLU A 26 122.40 -24.74 REMARK 500 8 PRO A 78 119.81 -39.22 REMARK 500 8 GLU A 82 65.08 -102.03 REMARK 500 8 LEU A 83 128.14 71.23 REMARK 500 9 ASN A 2 99.59 -68.57 REMARK 500 9 ALA A 20 -76.93 -46.49 REMARK 500 9 HIS A 25 -158.91 -139.30 REMARK 500 9 GLU A 26 132.26 -27.01 REMARK 500 9 PRO A 35 -19.74 -46.30 REMARK 500 9 LEU A 83 22.77 -154.35 REMARK 500 10 PRO A 78 119.87 -39.52 REMARK 500 10 GLU A 82 69.15 -110.76 REMARK 500 10 LEU A 83 94.37 58.06 REMARK 500 10 ARG A 90 88.89 73.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34870 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF THE NOVEL ADAPTOR DOMAIN TOMBN91 FROM THE REMARK 900 TOMAYMYCIN NON-RIBOSOMAL PEPTIDE SYNTHETASE DBREF 8QSX A -3 91 PDB 8QSX 8QSX -3 91 SEQRES 1 A 95 GLY PRO MET LEU MET ASN SER PRO LEU ARG THR THR VAL SEQRES 2 A 95 LEU ASP LEU ALA ARG THR THR LEU GLY SER ALA ASP LEU SEQRES 3 A 95 THR ALA HIS GLU PRO LEU ALA ASP ARG CYS GLU HIS PRO SEQRES 4 A 95 ALA LEU LEU ASP ASP LEU ALA THR THR LEU THR ALA VAL SEQRES 5 A 95 PHE ALA VAL GLU ILE THR GLY ALA ASP LEU ALA ALA GLY SEQRES 6 A 95 ALA THR VAL ALA ASP VAL ALA ALA ARG MET ASP ASP ARG SEQRES 7 A 95 ARG ASP ALA PRO ARG ILE PRO GLU LEU ARG ALA GLY LEU SEQRES 8 A 95 ALA PRO ARG ASP HELIX 1 AA1 SER A 3 GLY A 18 1 16 HELIX 2 AA2 PRO A 27 CYS A 32 1 6 HELIX 3 AA3 HIS A 34 ALA A 36 5 3 HELIX 4 AA4 LEU A 37 ALA A 50 1 14 HELIX 5 AA5 THR A 54 ALA A 59 1 6 HELIX 6 AA6 THR A 63 ALA A 77 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1