data_8QVP # _entry.id 8QVP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8QVP pdb_00008qvp 10.2210/pdb8qvp/pdb WWPDB D_1292133561 ? ? EMDB EMD-18671 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-08-13 ? 2 'EM metadata' 1 0 2025-08-13 ? 3 FSC 1 0 2025-08-13 ? 4 'Half map' 1 0 2025-08-13 1 5 'Half map' 1 0 2025-08-13 2 6 Image 1 0 2025-08-13 ? 7 'Primary map' 1 0 2025-08-13 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8QVP _pdbx_database_status.recvd_initial_deposition_date 2023-11-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 8QJ1 unspecified EMDB 'Cryo-EM structure of human islet amyloid polypeptide (hIAPP) mutant S29P, polymorph 1' EMD-18671 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email michal.maj@kemi.uu.se _pdbx_contact_author.name_first Michal _pdbx_contact_author.name_last Maj _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1567-9514 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ooi, S.A.' 1 0000-0002-7858-4208 'Valli, D.' 2 0009-0005-6060-4169 'Maj, M.' 3 0000-0003-1567-9514 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Cryo-EM structure of human islet amyloid polypeptide (hIAPP) mutant S29P, polymorph 1' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ooi, S.A.' 1 0000-0002-7858-4208 primary 'Valli, D.' 2 0009-0005-6060-4169 primary 'Maj, M.' 3 0000-0003-1567-9514 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Islet amyloid polypeptide' _entity.formula_weight 3917.349 _entity.pdbx_number_of_molecules 10 _entity.pdbx_ec ? _entity.pdbx_mutation S29P _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'KCNTATCATQRLANFLVHSSNNFGAILSPTNVGSNTY(NH2)' _entity_poly.pdbx_seq_one_letter_code_can KCNTATCATQRLANFLVHSSNNFGAILSPTNVGSNTYX _entity_poly.pdbx_strand_id H,I,J,K,L,M,N,O,P,Q _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 CYS n 1 3 ASN n 1 4 THR n 1 5 ALA n 1 6 THR n 1 7 CYS n 1 8 ALA n 1 9 THR n 1 10 GLN n 1 11 ARG n 1 12 LEU n 1 13 ALA n 1 14 ASN n 1 15 PHE n 1 16 LEU n 1 17 VAL n 1 18 HIS n 1 19 SER n 1 20 SER n 1 21 ASN n 1 22 ASN n 1 23 PHE n 1 24 GLY n 1 25 ALA n 1 26 ILE n 1 27 LEU n 1 28 SER n 1 29 PRO n 1 30 THR n 1 31 ASN n 1 32 VAL n 1 33 GLY n 1 34 SER n 1 35 ASN n 1 36 THR n 1 37 TYR n 1 38 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 38 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 ? ? ? H . n A 1 2 CYS 2 2 ? ? ? H . n A 1 3 ASN 3 3 ? ? ? H . n A 1 4 THR 4 4 ? ? ? H . n A 1 5 ALA 5 5 ? ? ? H . n A 1 6 THR 6 6 ? ? ? H . n A 1 7 CYS 7 7 ? ? ? H . n A 1 8 ALA 8 8 8 ALA ALA H . n A 1 9 THR 9 9 9 THR THR H . n A 1 10 GLN 10 10 10 GLN GLN H . n A 1 11 ARG 11 11 11 ARG ARG H . n A 1 12 LEU 12 12 12 LEU LEU H . n A 1 13 ALA 13 13 13 ALA ALA H . n A 1 14 ASN 14 14 14 ASN ASN H . n A 1 15 PHE 15 15 15 PHE PHE H . n A 1 16 LEU 16 16 16 LEU LEU H . n A 1 17 VAL 17 17 17 VAL VAL H . n A 1 18 HIS 18 18 18 HIS HIS H . n A 1 19 SER 19 19 19 SER SER H . n A 1 20 SER 20 20 20 SER SER H . n A 1 21 ASN 21 21 21 ASN ASN H . n A 1 22 ASN 22 22 22 ASN ASN H . n A 1 23 PHE 23 23 23 PHE PHE H . n A 1 24 GLY 24 24 24 GLY GLY H . n A 1 25 ALA 25 25 25 ALA ALA H . n A 1 26 ILE 26 26 26 ILE ILE H . n A 1 27 LEU 27 27 27 LEU LEU H . n A 1 28 SER 28 28 28 SER SER H . n A 1 29 PRO 29 29 29 PRO PRO H . n A 1 30 THR 30 30 30 THR THR H . n A 1 31 ASN 31 31 31 ASN ASN H . n A 1 32 VAL 32 32 32 VAL VAL H . n A 1 33 GLY 33 33 33 GLY GLY H . n A 1 34 SER 34 34 34 SER SER H . n A 1 35 ASN 35 35 35 ASN ASN H . n A 1 36 THR 36 36 36 THR THR H . n A 1 37 TYR 37 37 37 TYR TYR H . n A 1 38 NH2 38 38 38 NH2 NH2 H . n B 1 1 LYS 1 1 ? ? ? I . n B 1 2 CYS 2 2 ? ? ? I . n B 1 3 ASN 3 3 ? ? ? I . n B 1 4 THR 4 4 ? ? ? I . n B 1 5 ALA 5 5 ? ? ? I . n B 1 6 THR 6 6 ? ? ? I . n B 1 7 CYS 7 7 ? ? ? I . n B 1 8 ALA 8 8 8 ALA ALA I . n B 1 9 THR 9 9 9 THR THR I . n B 1 10 GLN 10 10 10 GLN GLN I . n B 1 11 ARG 11 11 11 ARG ARG I . n B 1 12 LEU 12 12 12 LEU LEU I . n B 1 13 ALA 13 13 13 ALA ALA I . n B 1 14 ASN 14 14 14 ASN ASN I . n B 1 15 PHE 15 15 15 PHE PHE I . n B 1 16 LEU 16 16 16 LEU LEU I . n B 1 17 VAL 17 17 17 VAL VAL I . n B 1 18 HIS 18 18 18 HIS HIS I . n B 1 19 SER 19 19 19 SER SER I . n B 1 20 SER 20 20 20 SER SER I . n B 1 21 ASN 21 21 21 ASN ASN I . n B 1 22 ASN 22 22 22 ASN ASN I . n B 1 23 PHE 23 23 23 PHE PHE I . n B 1 24 GLY 24 24 24 GLY GLY I . n B 1 25 ALA 25 25 25 ALA ALA I . n B 1 26 ILE 26 26 26 ILE ILE I . n B 1 27 LEU 27 27 27 LEU LEU I . n B 1 28 SER 28 28 28 SER SER I . n B 1 29 PRO 29 29 29 PRO PRO I . n B 1 30 THR 30 30 30 THR THR I . n B 1 31 ASN 31 31 31 ASN ASN I . n B 1 32 VAL 32 32 32 VAL VAL I . n B 1 33 GLY 33 33 33 GLY GLY I . n B 1 34 SER 34 34 34 SER SER I . n B 1 35 ASN 35 35 35 ASN ASN I . n B 1 36 THR 36 36 36 THR THR I . n B 1 37 TYR 37 37 37 TYR TYR I . n B 1 38 NH2 38 38 38 NH2 NH2 I . n C 1 1 LYS 1 1 ? ? ? J . n C 1 2 CYS 2 2 ? ? ? J . n C 1 3 ASN 3 3 ? ? ? J . n C 1 4 THR 4 4 ? ? ? J . n C 1 5 ALA 5 5 ? ? ? J . n C 1 6 THR 6 6 ? ? ? J . n C 1 7 CYS 7 7 ? ? ? J . n C 1 8 ALA 8 8 8 ALA ALA J . n C 1 9 THR 9 9 9 THR THR J . n C 1 10 GLN 10 10 10 GLN GLN J . n C 1 11 ARG 11 11 11 ARG ARG J . n C 1 12 LEU 12 12 12 LEU LEU J . n C 1 13 ALA 13 13 13 ALA ALA J . n C 1 14 ASN 14 14 14 ASN ASN J . n C 1 15 PHE 15 15 15 PHE PHE J . n C 1 16 LEU 16 16 16 LEU LEU J . n C 1 17 VAL 17 17 17 VAL VAL J . n C 1 18 HIS 18 18 18 HIS HIS J . n C 1 19 SER 19 19 19 SER SER J . n C 1 20 SER 20 20 20 SER SER J . n C 1 21 ASN 21 21 21 ASN ASN J . n C 1 22 ASN 22 22 22 ASN ASN J . n C 1 23 PHE 23 23 23 PHE PHE J . n C 1 24 GLY 24 24 24 GLY GLY J . n C 1 25 ALA 25 25 25 ALA ALA J . n C 1 26 ILE 26 26 26 ILE ILE J . n C 1 27 LEU 27 27 27 LEU LEU J . n C 1 28 SER 28 28 28 SER SER J . n C 1 29 PRO 29 29 29 PRO PRO J . n C 1 30 THR 30 30 30 THR THR J . n C 1 31 ASN 31 31 31 ASN ASN J . n C 1 32 VAL 32 32 32 VAL VAL J . n C 1 33 GLY 33 33 33 GLY GLY J . n C 1 34 SER 34 34 34 SER SER J . n C 1 35 ASN 35 35 35 ASN ASN J . n C 1 36 THR 36 36 36 THR THR J . n C 1 37 TYR 37 37 37 TYR TYR J . n C 1 38 NH2 38 38 38 NH2 NH2 J . n D 1 1 LYS 1 1 ? ? ? K . n D 1 2 CYS 2 2 ? ? ? K . n D 1 3 ASN 3 3 ? ? ? K . n D 1 4 THR 4 4 ? ? ? K . n D 1 5 ALA 5 5 ? ? ? K . n D 1 6 THR 6 6 ? ? ? K . n D 1 7 CYS 7 7 ? ? ? K . n D 1 8 ALA 8 8 8 ALA ALA K . n D 1 9 THR 9 9 9 THR THR K . n D 1 10 GLN 10 10 10 GLN GLN K . n D 1 11 ARG 11 11 11 ARG ARG K . n D 1 12 LEU 12 12 12 LEU LEU K . n D 1 13 ALA 13 13 13 ALA ALA K . n D 1 14 ASN 14 14 14 ASN ASN K . n D 1 15 PHE 15 15 15 PHE PHE K . n D 1 16 LEU 16 16 16 LEU LEU K . n D 1 17 VAL 17 17 17 VAL VAL K . n D 1 18 HIS 18 18 18 HIS HIS K . n D 1 19 SER 19 19 19 SER SER K . n D 1 20 SER 20 20 20 SER SER K . n D 1 21 ASN 21 21 21 ASN ASN K . n D 1 22 ASN 22 22 22 ASN ASN K . n D 1 23 PHE 23 23 23 PHE PHE K . n D 1 24 GLY 24 24 24 GLY GLY K . n D 1 25 ALA 25 25 25 ALA ALA K . n D 1 26 ILE 26 26 26 ILE ILE K . n D 1 27 LEU 27 27 27 LEU LEU K . n D 1 28 SER 28 28 28 SER SER K . n D 1 29 PRO 29 29 29 PRO PRO K . n D 1 30 THR 30 30 30 THR THR K . n D 1 31 ASN 31 31 31 ASN ASN K . n D 1 32 VAL 32 32 32 VAL VAL K . n D 1 33 GLY 33 33 33 GLY GLY K . n D 1 34 SER 34 34 34 SER SER K . n D 1 35 ASN 35 35 35 ASN ASN K . n D 1 36 THR 36 36 36 THR THR K . n D 1 37 TYR 37 37 37 TYR TYR K . n D 1 38 NH2 38 38 38 NH2 NH2 K . n E 1 1 LYS 1 1 ? ? ? L . n E 1 2 CYS 2 2 ? ? ? L . n E 1 3 ASN 3 3 ? ? ? L . n E 1 4 THR 4 4 ? ? ? L . n E 1 5 ALA 5 5 ? ? ? L . n E 1 6 THR 6 6 ? ? ? L . n E 1 7 CYS 7 7 ? ? ? L . n E 1 8 ALA 8 8 8 ALA ALA L . n E 1 9 THR 9 9 9 THR THR L . n E 1 10 GLN 10 10 10 GLN GLN L . n E 1 11 ARG 11 11 11 ARG ARG L . n E 1 12 LEU 12 12 12 LEU LEU L . n E 1 13 ALA 13 13 13 ALA ALA L . n E 1 14 ASN 14 14 14 ASN ASN L . n E 1 15 PHE 15 15 15 PHE PHE L . n E 1 16 LEU 16 16 16 LEU LEU L . n E 1 17 VAL 17 17 17 VAL VAL L . n E 1 18 HIS 18 18 18 HIS HIS L . n E 1 19 SER 19 19 19 SER SER L . n E 1 20 SER 20 20 20 SER SER L . n E 1 21 ASN 21 21 21 ASN ASN L . n E 1 22 ASN 22 22 22 ASN ASN L . n E 1 23 PHE 23 23 23 PHE PHE L . n E 1 24 GLY 24 24 24 GLY GLY L . n E 1 25 ALA 25 25 25 ALA ALA L . n E 1 26 ILE 26 26 26 ILE ILE L . n E 1 27 LEU 27 27 27 LEU LEU L . n E 1 28 SER 28 28 28 SER SER L . n E 1 29 PRO 29 29 29 PRO PRO L . n E 1 30 THR 30 30 30 THR THR L . n E 1 31 ASN 31 31 31 ASN ASN L . n E 1 32 VAL 32 32 32 VAL VAL L . n E 1 33 GLY 33 33 33 GLY GLY L . n E 1 34 SER 34 34 34 SER SER L . n E 1 35 ASN 35 35 35 ASN ASN L . n E 1 36 THR 36 36 36 THR THR L . n E 1 37 TYR 37 37 37 TYR TYR L . n E 1 38 NH2 38 38 38 NH2 NH2 L . n F 1 1 LYS 1 1 ? ? ? M . n F 1 2 CYS 2 2 ? ? ? M . n F 1 3 ASN 3 3 ? ? ? M . n F 1 4 THR 4 4 ? ? ? M . n F 1 5 ALA 5 5 ? ? ? M . n F 1 6 THR 6 6 ? ? ? M . n F 1 7 CYS 7 7 ? ? ? M . n F 1 8 ALA 8 8 8 ALA ALA M . n F 1 9 THR 9 9 9 THR THR M . n F 1 10 GLN 10 10 10 GLN GLN M . n F 1 11 ARG 11 11 11 ARG ARG M . n F 1 12 LEU 12 12 12 LEU LEU M . n F 1 13 ALA 13 13 13 ALA ALA M . n F 1 14 ASN 14 14 14 ASN ASN M . n F 1 15 PHE 15 15 15 PHE PHE M . n F 1 16 LEU 16 16 16 LEU LEU M . n F 1 17 VAL 17 17 17 VAL VAL M . n F 1 18 HIS 18 18 18 HIS HIS M . n F 1 19 SER 19 19 19 SER SER M . n F 1 20 SER 20 20 20 SER SER M . n F 1 21 ASN 21 21 21 ASN ASN M . n F 1 22 ASN 22 22 22 ASN ASN M . n F 1 23 PHE 23 23 23 PHE PHE M . n F 1 24 GLY 24 24 24 GLY GLY M . n F 1 25 ALA 25 25 25 ALA ALA M . n F 1 26 ILE 26 26 26 ILE ILE M . n F 1 27 LEU 27 27 27 LEU LEU M . n F 1 28 SER 28 28 28 SER SER M . n F 1 29 PRO 29 29 29 PRO PRO M . n F 1 30 THR 30 30 30 THR THR M . n F 1 31 ASN 31 31 31 ASN ASN M . n F 1 32 VAL 32 32 32 VAL VAL M . n F 1 33 GLY 33 33 33 GLY GLY M . n F 1 34 SER 34 34 34 SER SER M . n F 1 35 ASN 35 35 35 ASN ASN M . n F 1 36 THR 36 36 36 THR THR M . n F 1 37 TYR 37 37 37 TYR TYR M . n F 1 38 NH2 38 38 38 NH2 NH2 M . n G 1 1 LYS 1 1 ? ? ? N . n G 1 2 CYS 2 2 ? ? ? N . n G 1 3 ASN 3 3 ? ? ? N . n G 1 4 THR 4 4 ? ? ? N . n G 1 5 ALA 5 5 ? ? ? N . n G 1 6 THR 6 6 ? ? ? N . n G 1 7 CYS 7 7 ? ? ? N . n G 1 8 ALA 8 8 8 ALA ALA N . n G 1 9 THR 9 9 9 THR THR N . n G 1 10 GLN 10 10 10 GLN GLN N . n G 1 11 ARG 11 11 11 ARG ARG N . n G 1 12 LEU 12 12 12 LEU LEU N . n G 1 13 ALA 13 13 13 ALA ALA N . n G 1 14 ASN 14 14 14 ASN ASN N . n G 1 15 PHE 15 15 15 PHE PHE N . n G 1 16 LEU 16 16 16 LEU LEU N . n G 1 17 VAL 17 17 17 VAL VAL N . n G 1 18 HIS 18 18 18 HIS HIS N . n G 1 19 SER 19 19 19 SER SER N . n G 1 20 SER 20 20 20 SER SER N . n G 1 21 ASN 21 21 21 ASN ASN N . n G 1 22 ASN 22 22 22 ASN ASN N . n G 1 23 PHE 23 23 23 PHE PHE N . n G 1 24 GLY 24 24 24 GLY GLY N . n G 1 25 ALA 25 25 25 ALA ALA N . n G 1 26 ILE 26 26 26 ILE ILE N . n G 1 27 LEU 27 27 27 LEU LEU N . n G 1 28 SER 28 28 28 SER SER N . n G 1 29 PRO 29 29 29 PRO PRO N . n G 1 30 THR 30 30 30 THR THR N . n G 1 31 ASN 31 31 31 ASN ASN N . n G 1 32 VAL 32 32 32 VAL VAL N . n G 1 33 GLY 33 33 33 GLY GLY N . n G 1 34 SER 34 34 34 SER SER N . n G 1 35 ASN 35 35 35 ASN ASN N . n G 1 36 THR 36 36 36 THR THR N . n G 1 37 TYR 37 37 37 TYR TYR N . n G 1 38 NH2 38 38 38 NH2 NH2 N . n H 1 1 LYS 1 1 ? ? ? O . n H 1 2 CYS 2 2 ? ? ? O . n H 1 3 ASN 3 3 ? ? ? O . n H 1 4 THR 4 4 ? ? ? O . n H 1 5 ALA 5 5 ? ? ? O . n H 1 6 THR 6 6 ? ? ? O . n H 1 7 CYS 7 7 ? ? ? O . n H 1 8 ALA 8 8 8 ALA ALA O . n H 1 9 THR 9 9 9 THR THR O . n H 1 10 GLN 10 10 10 GLN GLN O . n H 1 11 ARG 11 11 11 ARG ARG O . n H 1 12 LEU 12 12 12 LEU LEU O . n H 1 13 ALA 13 13 13 ALA ALA O . n H 1 14 ASN 14 14 14 ASN ASN O . n H 1 15 PHE 15 15 15 PHE PHE O . n H 1 16 LEU 16 16 16 LEU LEU O . n H 1 17 VAL 17 17 17 VAL VAL O . n H 1 18 HIS 18 18 18 HIS HIS O . n H 1 19 SER 19 19 19 SER SER O . n H 1 20 SER 20 20 20 SER SER O . n H 1 21 ASN 21 21 21 ASN ASN O . n H 1 22 ASN 22 22 22 ASN ASN O . n H 1 23 PHE 23 23 23 PHE PHE O . n H 1 24 GLY 24 24 24 GLY GLY O . n H 1 25 ALA 25 25 25 ALA ALA O . n H 1 26 ILE 26 26 26 ILE ILE O . n H 1 27 LEU 27 27 27 LEU LEU O . n H 1 28 SER 28 28 28 SER SER O . n H 1 29 PRO 29 29 29 PRO PRO O . n H 1 30 THR 30 30 30 THR THR O . n H 1 31 ASN 31 31 31 ASN ASN O . n H 1 32 VAL 32 32 32 VAL VAL O . n H 1 33 GLY 33 33 33 GLY GLY O . n H 1 34 SER 34 34 34 SER SER O . n H 1 35 ASN 35 35 35 ASN ASN O . n H 1 36 THR 36 36 36 THR THR O . n H 1 37 TYR 37 37 37 TYR TYR O . n H 1 38 NH2 38 38 38 NH2 NH2 O . n I 1 1 LYS 1 1 ? ? ? P . n I 1 2 CYS 2 2 ? ? ? P . n I 1 3 ASN 3 3 ? ? ? P . n I 1 4 THR 4 4 ? ? ? P . n I 1 5 ALA 5 5 ? ? ? P . n I 1 6 THR 6 6 ? ? ? P . n I 1 7 CYS 7 7 ? ? ? P . n I 1 8 ALA 8 8 8 ALA ALA P . n I 1 9 THR 9 9 9 THR THR P . n I 1 10 GLN 10 10 10 GLN GLN P . n I 1 11 ARG 11 11 11 ARG ARG P . n I 1 12 LEU 12 12 12 LEU LEU P . n I 1 13 ALA 13 13 13 ALA ALA P . n I 1 14 ASN 14 14 14 ASN ASN P . n I 1 15 PHE 15 15 15 PHE PHE P . n I 1 16 LEU 16 16 16 LEU LEU P . n I 1 17 VAL 17 17 17 VAL VAL P . n I 1 18 HIS 18 18 18 HIS HIS P . n I 1 19 SER 19 19 19 SER SER P . n I 1 20 SER 20 20 20 SER SER P . n I 1 21 ASN 21 21 21 ASN ASN P . n I 1 22 ASN 22 22 22 ASN ASN P . n I 1 23 PHE 23 23 23 PHE PHE P . n I 1 24 GLY 24 24 24 GLY GLY P . n I 1 25 ALA 25 25 25 ALA ALA P . n I 1 26 ILE 26 26 26 ILE ILE P . n I 1 27 LEU 27 27 27 LEU LEU P . n I 1 28 SER 28 28 28 SER SER P . n I 1 29 PRO 29 29 29 PRO PRO P . n I 1 30 THR 30 30 30 THR THR P . n I 1 31 ASN 31 31 31 ASN ASN P . n I 1 32 VAL 32 32 32 VAL VAL P . n I 1 33 GLY 33 33 33 GLY GLY P . n I 1 34 SER 34 34 34 SER SER P . n I 1 35 ASN 35 35 35 ASN ASN P . n I 1 36 THR 36 36 36 THR THR P . n I 1 37 TYR 37 37 37 TYR TYR P . n I 1 38 NH2 38 38 38 NH2 NH2 P . n J 1 1 LYS 1 1 ? ? ? Q . n J 1 2 CYS 2 2 ? ? ? Q . n J 1 3 ASN 3 3 ? ? ? Q . n J 1 4 THR 4 4 ? ? ? Q . n J 1 5 ALA 5 5 ? ? ? Q . n J 1 6 THR 6 6 ? ? ? Q . n J 1 7 CYS 7 7 ? ? ? Q . n J 1 8 ALA 8 8 8 ALA ALA Q . n J 1 9 THR 9 9 9 THR THR Q . n J 1 10 GLN 10 10 10 GLN GLN Q . n J 1 11 ARG 11 11 11 ARG ARG Q . n J 1 12 LEU 12 12 12 LEU LEU Q . n J 1 13 ALA 13 13 13 ALA ALA Q . n J 1 14 ASN 14 14 14 ASN ASN Q . n J 1 15 PHE 15 15 15 PHE PHE Q . n J 1 16 LEU 16 16 16 LEU LEU Q . n J 1 17 VAL 17 17 17 VAL VAL Q . n J 1 18 HIS 18 18 18 HIS HIS Q . n J 1 19 SER 19 19 19 SER SER Q . n J 1 20 SER 20 20 20 SER SER Q . n J 1 21 ASN 21 21 21 ASN ASN Q . n J 1 22 ASN 22 22 22 ASN ASN Q . n J 1 23 PHE 23 23 23 PHE PHE Q . n J 1 24 GLY 24 24 24 GLY GLY Q . n J 1 25 ALA 25 25 25 ALA ALA Q . n J 1 26 ILE 26 26 26 ILE ILE Q . n J 1 27 LEU 27 27 27 LEU LEU Q . n J 1 28 SER 28 28 28 SER SER Q . n J 1 29 PRO 29 29 29 PRO PRO Q . n J 1 30 THR 30 30 30 THR THR Q . n J 1 31 ASN 31 31 31 ASN ASN Q . n J 1 32 VAL 32 32 32 VAL VAL Q . n J 1 33 GLY 33 33 33 GLY GLY Q . n J 1 34 SER 34 34 34 SER SER Q . n J 1 35 ASN 35 35 35 ASN ASN Q . n J 1 36 THR 36 36 36 THR THR Q . n J 1 37 TYR 37 37 37 TYR TYR Q . n J 1 38 NH2 38 38 38 NH2 NH2 Q . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8QVP _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8QVP _struct.title 'Cryo-EM structure of human islet amyloid polypeptide (hIAPP) mutant S29P, polymorph 1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8QVP _struct_keywords.text 'amyloid, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code IAPP_HUMAN _struct_ref.pdbx_db_accession P10997 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KCNTATCATQRLANFLVHSSNNFGAILSSTNVGSNTY _struct_ref.pdbx_align_begin 34 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8QVP H 1 ? 37 ? P10997 34 ? 70 ? 1 37 2 1 8QVP I 1 ? 37 ? P10997 34 ? 70 ? 1 37 3 1 8QVP J 1 ? 37 ? P10997 34 ? 70 ? 1 37 4 1 8QVP K 1 ? 37 ? P10997 34 ? 70 ? 1 37 5 1 8QVP L 1 ? 37 ? P10997 34 ? 70 ? 1 37 6 1 8QVP M 1 ? 37 ? P10997 34 ? 70 ? 1 37 7 1 8QVP N 1 ? 37 ? P10997 34 ? 70 ? 1 37 8 1 8QVP O 1 ? 37 ? P10997 34 ? 70 ? 1 37 9 1 8QVP P 1 ? 37 ? P10997 34 ? 70 ? 1 37 10 1 8QVP Q 1 ? 37 ? P10997 34 ? 70 ? 1 37 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8QVP PRO H 29 ? UNP P10997 SER 62 'engineered mutation' 29 1 1 8QVP NH2 H 38 ? UNP P10997 ? ? 'expression tag' 38 2 2 8QVP PRO I 29 ? UNP P10997 SER 62 'engineered mutation' 29 3 2 8QVP NH2 I 38 ? UNP P10997 ? ? 'expression tag' 38 4 3 8QVP PRO J 29 ? UNP P10997 SER 62 'engineered mutation' 29 5 3 8QVP NH2 J 38 ? UNP P10997 ? ? 'expression tag' 38 6 4 8QVP PRO K 29 ? UNP P10997 SER 62 'engineered mutation' 29 7 4 8QVP NH2 K 38 ? UNP P10997 ? ? 'expression tag' 38 8 5 8QVP PRO L 29 ? UNP P10997 SER 62 'engineered mutation' 29 9 5 8QVP NH2 L 38 ? UNP P10997 ? ? 'expression tag' 38 10 6 8QVP PRO M 29 ? UNP P10997 SER 62 'engineered mutation' 29 11 6 8QVP NH2 M 38 ? UNP P10997 ? ? 'expression tag' 38 12 7 8QVP PRO N 29 ? UNP P10997 SER 62 'engineered mutation' 29 13 7 8QVP NH2 N 38 ? UNP P10997 ? ? 'expression tag' 38 14 8 8QVP PRO O 29 ? UNP P10997 SER 62 'engineered mutation' 29 15 8 8QVP NH2 O 38 ? UNP P10997 ? ? 'expression tag' 38 16 9 8QVP PRO P 29 ? UNP P10997 SER 62 'engineered mutation' 29 17 9 8QVP NH2 P 38 ? UNP P10997 ? ? 'expression tag' 38 18 10 8QVP PRO Q 29 ? UNP P10997 SER 62 'engineered mutation' 29 19 10 8QVP NH2 Q 38 ? UNP P10997 ? ? 'expression tag' 38 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A TYR 37 C ? ? ? 1_555 A NH2 38 N ? ? H TYR 37 H NH2 38 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? B TYR 37 C ? ? ? 1_555 B NH2 38 N ? ? I TYR 37 I NH2 38 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? C TYR 37 C ? ? ? 1_555 C NH2 38 N ? ? J TYR 37 J NH2 38 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? D TYR 37 C ? ? ? 1_555 D NH2 38 N ? ? K TYR 37 K NH2 38 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale5 covale both ? E TYR 37 C ? ? ? 1_555 E NH2 38 N ? ? L TYR 37 L NH2 38 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? F TYR 37 C ? ? ? 1_555 F NH2 38 N ? ? M TYR 37 M NH2 38 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale7 covale both ? G TYR 37 C ? ? ? 1_555 G NH2 38 N ? ? N TYR 37 N NH2 38 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale8 covale both ? H TYR 37 C ? ? ? 1_555 H NH2 38 N ? ? O TYR 37 O NH2 38 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale9 covale both ? I TYR 37 C ? ? ? 1_555 I NH2 38 N ? ? P TYR 37 P NH2 38 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale10 covale both ? J TYR 37 C ? ? ? 1_555 J NH2 38 N ? ? Q TYR 37 Q NH2 38 1_555 ? ? ? ? ? ? ? 1.332 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NH2 A 38 ? TYR A 37 ? NH2 H 38 ? 1_555 TYR H 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 2 NH2 B 38 ? TYR B 37 ? NH2 I 38 ? 1_555 TYR I 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 3 NH2 C 38 ? TYR C 37 ? NH2 J 38 ? 1_555 TYR J 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 4 NH2 D 38 ? TYR D 37 ? NH2 K 38 ? 1_555 TYR K 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 5 NH2 E 38 ? TYR E 37 ? NH2 L 38 ? 1_555 TYR L 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 6 NH2 F 38 ? TYR F 37 ? NH2 M 38 ? 1_555 TYR M 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 7 NH2 G 38 ? TYR G 37 ? NH2 N 38 ? 1_555 TYR N 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 8 NH2 H 38 ? TYR H 37 ? NH2 O 38 ? 1_555 TYR O 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 9 NH2 I 38 ? TYR I 37 ? NH2 P 38 ? 1_555 TYR P 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 10 NH2 J 38 ? TYR J 37 ? NH2 Q 38 ? 1_555 TYR Q 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? AA4 ? 5 ? AA5 ? 5 ? AA6 ? 5 ? AA7 ? 5 ? AA8 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA5 4 5 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA6 4 5 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel AA7 4 5 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA8 3 4 ? parallel AA8 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR E 9 ? LEU E 12 ? THR L 9 LEU L 12 AA1 2 THR C 9 ? LEU C 12 ? THR J 9 LEU J 12 AA1 3 THR A 9 ? LEU A 12 ? THR H 9 LEU H 12 AA1 4 THR I 9 ? LEU I 12 ? THR P 9 LEU P 12 AA1 5 THR G 9 ? LEU G 12 ? THR N 9 LEU N 12 AA2 1 PHE E 15 ? VAL E 17 ? PHE L 15 VAL L 17 AA2 2 PHE C 15 ? VAL C 17 ? PHE J 15 VAL J 17 AA2 3 PHE A 15 ? VAL A 17 ? PHE H 15 VAL H 17 AA2 4 PHE I 15 ? VAL I 17 ? PHE P 15 VAL P 17 AA2 5 PHE G 15 ? VAL G 17 ? PHE N 15 VAL N 17 AA3 1 ASN E 22 ? LEU E 27 ? ASN L 22 LEU L 27 AA3 2 ASN C 22 ? LEU C 27 ? ASN J 22 LEU J 27 AA3 3 ASN A 22 ? LEU A 27 ? ASN H 22 LEU H 27 AA3 4 ASN I 22 ? LEU I 27 ? ASN P 22 LEU P 27 AA3 5 ASN G 22 ? LEU G 27 ? ASN N 22 LEU N 27 AA4 1 THR E 30 ? GLY E 33 ? THR L 30 GLY L 33 AA4 2 THR C 30 ? GLY C 33 ? THR J 30 GLY J 33 AA4 3 THR A 30 ? GLY A 33 ? THR H 30 GLY H 33 AA4 4 THR I 30 ? GLY I 33 ? THR P 30 GLY P 33 AA4 5 THR G 30 ? GLY G 33 ? THR N 30 GLY N 33 AA5 1 THR F 9 ? LEU F 12 ? THR M 9 LEU M 12 AA5 2 THR D 9 ? LEU D 12 ? THR K 9 LEU K 12 AA5 3 THR B 9 ? LEU B 12 ? THR I 9 LEU I 12 AA5 4 THR J 9 ? LEU J 12 ? THR Q 9 LEU Q 12 AA5 5 THR H 9 ? LEU H 12 ? THR O 9 LEU O 12 AA6 1 PHE F 15 ? VAL F 17 ? PHE M 15 VAL M 17 AA6 2 PHE D 15 ? VAL D 17 ? PHE K 15 VAL K 17 AA6 3 PHE B 15 ? VAL B 17 ? PHE I 15 VAL I 17 AA6 4 PHE J 15 ? VAL J 17 ? PHE Q 15 VAL Q 17 AA6 5 PHE H 15 ? VAL H 17 ? PHE O 15 VAL O 17 AA7 1 ASN F 22 ? LEU F 27 ? ASN M 22 LEU M 27 AA7 2 ASN D 22 ? LEU D 27 ? ASN K 22 LEU K 27 AA7 3 ASN B 22 ? LEU B 27 ? ASN I 22 LEU I 27 AA7 4 ASN J 22 ? LEU J 27 ? ASN Q 22 LEU Q 27 AA7 5 ASN H 22 ? LEU H 27 ? ASN O 22 LEU O 27 AA8 1 THR F 30 ? GLY F 33 ? THR M 30 GLY M 33 AA8 2 THR D 30 ? GLY D 33 ? THR K 30 GLY K 33 AA8 3 THR B 30 ? GLY B 33 ? THR I 30 GLY I 33 AA8 4 THR J 30 ? GLY J 33 ? THR Q 30 GLY Q 33 AA8 5 THR H 30 ? GLY H 33 ? THR O 30 GLY O 33 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LEU E 12 ? O LEU L 12 N ARG C 11 ? N ARG J 11 AA1 2 3 O LEU C 12 ? O LEU J 12 N ARG A 11 ? N ARG H 11 AA1 3 4 N LEU A 12 ? N LEU H 12 O ARG I 11 ? O ARG P 11 AA1 4 5 O LEU I 12 ? O LEU P 12 N ARG G 11 ? N ARG N 11 AA2 1 2 O VAL E 17 ? O VAL L 17 N LEU C 16 ? N LEU J 16 AA2 2 3 O VAL C 17 ? O VAL J 17 N LEU A 16 ? N LEU H 16 AA2 3 4 N VAL A 17 ? N VAL H 17 O LEU I 16 ? O LEU P 16 AA2 4 5 O VAL I 17 ? O VAL P 17 N LEU G 16 ? N LEU N 16 AA3 1 2 O ILE E 26 ? O ILE L 26 N ALA C 25 ? N ALA J 25 AA3 2 3 O ILE C 26 ? O ILE J 26 N ALA A 25 ? N ALA H 25 AA3 3 4 N ILE A 26 ? N ILE H 26 O ALA I 25 ? O ALA P 25 AA3 4 5 O ILE I 26 ? O ILE P 26 N ALA G 25 ? N ALA N 25 AA4 1 2 O VAL E 32 ? O VAL L 32 N ASN C 31 ? N ASN J 31 AA4 2 3 O VAL C 32 ? O VAL J 32 N ASN A 31 ? N ASN H 31 AA4 3 4 N VAL A 32 ? N VAL H 32 O ASN I 31 ? O ASN P 31 AA4 4 5 O VAL I 32 ? O VAL P 32 N ASN G 31 ? N ASN N 31 AA5 1 2 O LEU F 12 ? O LEU M 12 N ARG D 11 ? N ARG K 11 AA5 2 3 O LEU D 12 ? O LEU K 12 N ARG B 11 ? N ARG I 11 AA5 3 4 N LEU B 12 ? N LEU I 12 O ARG J 11 ? O ARG Q 11 AA5 4 5 O LEU J 12 ? O LEU Q 12 N ARG H 11 ? N ARG O 11 AA6 1 2 O VAL F 17 ? O VAL M 17 N LEU D 16 ? N LEU K 16 AA6 2 3 O VAL D 17 ? O VAL K 17 N LEU B 16 ? N LEU I 16 AA6 3 4 N VAL B 17 ? N VAL I 17 O LEU J 16 ? O LEU Q 16 AA6 4 5 O VAL J 17 ? O VAL Q 17 N LEU H 16 ? N LEU O 16 AA7 1 2 O ILE F 26 ? O ILE M 26 N ALA D 25 ? N ALA K 25 AA7 2 3 O ILE D 26 ? O ILE K 26 N ALA B 25 ? N ALA I 25 AA7 3 4 N ILE B 26 ? N ILE I 26 O ALA J 25 ? O ALA Q 25 AA7 4 5 O ILE J 26 ? O ILE Q 26 N ALA H 25 ? N ALA O 25 AA8 1 2 O VAL F 32 ? O VAL M 32 N ASN D 31 ? N ASN K 31 AA8 2 3 O VAL D 32 ? O VAL K 32 N ASN B 31 ? N ASN I 31 AA8 3 4 N VAL B 32 ? N VAL I 32 O ASN J 31 ? O ASN Q 31 AA8 4 5 O THR J 30 ? O THR Q 30 N ASN H 31 ? N ASN O 31 # _pdbx_entry_details.entry_id 8QVP _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER H 28 ? ? -141.45 53.12 2 1 SER I 28 ? ? -141.53 53.13 3 1 SER J 28 ? ? -141.55 53.24 4 1 SER K 28 ? ? -141.48 53.20 5 1 SER L 28 ? ? -141.58 53.20 6 1 SER M 28 ? ? -141.53 53.25 7 1 SER N 28 ? ? -141.52 53.25 8 1 SER O 28 ? ? -141.48 53.12 9 1 SER P 28 ? ? -141.50 53.16 10 1 SER Q 28 ? ? -141.52 53.22 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 SER H 20 ? ? ASN H 21 ? ? 146.21 2 1 SER I 20 ? ? ASN I 21 ? ? 146.24 3 1 SER J 20 ? ? ASN J 21 ? ? 146.20 4 1 SER K 20 ? ? ASN K 21 ? ? 146.23 5 1 SER L 20 ? ? ASN L 21 ? ? 146.22 6 1 SER M 20 ? ? ASN M 21 ? ? 146.22 7 1 SER N 20 ? ? ASN N 21 ? ? 146.20 8 1 SER O 20 ? ? ASN O 21 ? ? 146.15 9 1 SER P 20 ? ? ASN P 21 ? ? 146.24 10 1 SER Q 20 ? ? ASN Q 21 ? ? 146.23 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8QVP _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8QVP _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.75 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 4930 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type CELL _em_entity_assembly.name 'Human islet amyloid polypeptide (hIAPP)' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8QVP _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 600 _em_imaging.nominal_defocus_max 2400 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 165000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 8QVP _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE-PROPANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277.15 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8QVP _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 H LYS 1 ? A LYS 1 2 1 Y 1 H CYS 2 ? A CYS 2 3 1 Y 1 H ASN 3 ? A ASN 3 4 1 Y 1 H THR 4 ? A THR 4 5 1 Y 1 H ALA 5 ? A ALA 5 6 1 Y 1 H THR 6 ? A THR 6 7 1 Y 1 H CYS 7 ? A CYS 7 8 1 Y 1 I LYS 1 ? B LYS 1 9 1 Y 1 I CYS 2 ? B CYS 2 10 1 Y 1 I ASN 3 ? B ASN 3 11 1 Y 1 I THR 4 ? B THR 4 12 1 Y 1 I ALA 5 ? B ALA 5 13 1 Y 1 I THR 6 ? B THR 6 14 1 Y 1 I CYS 7 ? B CYS 7 15 1 Y 1 J LYS 1 ? C LYS 1 16 1 Y 1 J CYS 2 ? C CYS 2 17 1 Y 1 J ASN 3 ? C ASN 3 18 1 Y 1 J THR 4 ? C THR 4 19 1 Y 1 J ALA 5 ? C ALA 5 20 1 Y 1 J THR 6 ? C THR 6 21 1 Y 1 J CYS 7 ? C CYS 7 22 1 Y 1 K LYS 1 ? D LYS 1 23 1 Y 1 K CYS 2 ? D CYS 2 24 1 Y 1 K ASN 3 ? D ASN 3 25 1 Y 1 K THR 4 ? D THR 4 26 1 Y 1 K ALA 5 ? D ALA 5 27 1 Y 1 K THR 6 ? D THR 6 28 1 Y 1 K CYS 7 ? D CYS 7 29 1 Y 1 L LYS 1 ? E LYS 1 30 1 Y 1 L CYS 2 ? E CYS 2 31 1 Y 1 L ASN 3 ? E ASN 3 32 1 Y 1 L THR 4 ? E THR 4 33 1 Y 1 L ALA 5 ? E ALA 5 34 1 Y 1 L THR 6 ? E THR 6 35 1 Y 1 L CYS 7 ? E CYS 7 36 1 Y 1 M LYS 1 ? F LYS 1 37 1 Y 1 M CYS 2 ? F CYS 2 38 1 Y 1 M ASN 3 ? F ASN 3 39 1 Y 1 M THR 4 ? F THR 4 40 1 Y 1 M ALA 5 ? F ALA 5 41 1 Y 1 M THR 6 ? F THR 6 42 1 Y 1 M CYS 7 ? F CYS 7 43 1 Y 1 N LYS 1 ? G LYS 1 44 1 Y 1 N CYS 2 ? G CYS 2 45 1 Y 1 N ASN 3 ? G ASN 3 46 1 Y 1 N THR 4 ? G THR 4 47 1 Y 1 N ALA 5 ? G ALA 5 48 1 Y 1 N THR 6 ? G THR 6 49 1 Y 1 N CYS 7 ? G CYS 7 50 1 Y 1 O LYS 1 ? H LYS 1 51 1 Y 1 O CYS 2 ? H CYS 2 52 1 Y 1 O ASN 3 ? H ASN 3 53 1 Y 1 O THR 4 ? H THR 4 54 1 Y 1 O ALA 5 ? H ALA 5 55 1 Y 1 O THR 6 ? H THR 6 56 1 Y 1 O CYS 7 ? H CYS 7 57 1 Y 1 P LYS 1 ? I LYS 1 58 1 Y 1 P CYS 2 ? I CYS 2 59 1 Y 1 P ASN 3 ? I ASN 3 60 1 Y 1 P THR 4 ? I THR 4 61 1 Y 1 P ALA 5 ? I ALA 5 62 1 Y 1 P THR 6 ? I THR 6 63 1 Y 1 P CYS 7 ? I CYS 7 64 1 Y 1 Q LYS 1 ? J LYS 1 65 1 Y 1 Q CYS 2 ? J CYS 2 66 1 Y 1 Q ASN 3 ? J ASN 3 67 1 Y 1 Q THR 4 ? J THR 4 68 1 Y 1 Q ALA 5 ? J ALA 5 69 1 Y 1 Q THR 6 ? J THR 6 70 1 Y 1 Q CYS 7 ? J CYS 7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 CYS N N N N 58 CYS CA C N R 59 CYS C C N N 60 CYS O O N N 61 CYS CB C N N 62 CYS SG S N N 63 CYS OXT O N N 64 CYS H H N N 65 CYS H2 H N N 66 CYS HA H N N 67 CYS HB2 H N N 68 CYS HB3 H N N 69 CYS HG H N N 70 CYS HXT H N N 71 GLN N N N N 72 GLN CA C N S 73 GLN C C N N 74 GLN O O N N 75 GLN CB C N N 76 GLN CG C N N 77 GLN CD C N N 78 GLN OE1 O N N 79 GLN NE2 N N N 80 GLN OXT O N N 81 GLN H H N N 82 GLN H2 H N N 83 GLN HA H N N 84 GLN HB2 H N N 85 GLN HB3 H N N 86 GLN HG2 H N N 87 GLN HG3 H N N 88 GLN HE21 H N N 89 GLN HE22 H N N 90 GLN HXT H N N 91 GLY N N N N 92 GLY CA C N N 93 GLY C C N N 94 GLY O O N N 95 GLY OXT O N N 96 GLY H H N N 97 GLY H2 H N N 98 GLY HA2 H N N 99 GLY HA3 H N N 100 GLY HXT H N N 101 HIS N N N N 102 HIS CA C N S 103 HIS C C N N 104 HIS O O N N 105 HIS CB C N N 106 HIS CG C Y N 107 HIS ND1 N Y N 108 HIS CD2 C Y N 109 HIS CE1 C Y N 110 HIS NE2 N Y N 111 HIS OXT O N N 112 HIS H H N N 113 HIS H2 H N N 114 HIS HA H N N 115 HIS HB2 H N N 116 HIS HB3 H N N 117 HIS HD1 H N N 118 HIS HD2 H N N 119 HIS HE1 H N N 120 HIS HE2 H N N 121 HIS HXT H N N 122 ILE N N N N 123 ILE CA C N S 124 ILE C C N N 125 ILE O O N N 126 ILE CB C N S 127 ILE CG1 C N N 128 ILE CG2 C N N 129 ILE CD1 C N N 130 ILE OXT O N N 131 ILE H H N N 132 ILE H2 H N N 133 ILE HA H N N 134 ILE HB H N N 135 ILE HG12 H N N 136 ILE HG13 H N N 137 ILE HG21 H N N 138 ILE HG22 H N N 139 ILE HG23 H N N 140 ILE HD11 H N N 141 ILE HD12 H N N 142 ILE HD13 H N N 143 ILE HXT H N N 144 LEU N N N N 145 LEU CA C N S 146 LEU C C N N 147 LEU O O N N 148 LEU CB C N N 149 LEU CG C N N 150 LEU CD1 C N N 151 LEU CD2 C N N 152 LEU OXT O N N 153 LEU H H N N 154 LEU H2 H N N 155 LEU HA H N N 156 LEU HB2 H N N 157 LEU HB3 H N N 158 LEU HG H N N 159 LEU HD11 H N N 160 LEU HD12 H N N 161 LEU HD13 H N N 162 LEU HD21 H N N 163 LEU HD22 H N N 164 LEU HD23 H N N 165 LEU HXT H N N 166 LYS N N N N 167 LYS CA C N S 168 LYS C C N N 169 LYS O O N N 170 LYS CB C N N 171 LYS CG C N N 172 LYS CD C N N 173 LYS CE C N N 174 LYS NZ N N N 175 LYS OXT O N N 176 LYS H H N N 177 LYS H2 H N N 178 LYS HA H N N 179 LYS HB2 H N N 180 LYS HB3 H N N 181 LYS HG2 H N N 182 LYS HG3 H N N 183 LYS HD2 H N N 184 LYS HD3 H N N 185 LYS HE2 H N N 186 LYS HE3 H N N 187 LYS HZ1 H N N 188 LYS HZ2 H N N 189 LYS HZ3 H N N 190 LYS HXT H N N 191 NH2 N N N N 192 NH2 HN1 H N N 193 NH2 HN2 H N N 194 PHE N N N N 195 PHE CA C N S 196 PHE C C N N 197 PHE O O N N 198 PHE CB C N N 199 PHE CG C Y N 200 PHE CD1 C Y N 201 PHE CD2 C Y N 202 PHE CE1 C Y N 203 PHE CE2 C Y N 204 PHE CZ C Y N 205 PHE OXT O N N 206 PHE H H N N 207 PHE H2 H N N 208 PHE HA H N N 209 PHE HB2 H N N 210 PHE HB3 H N N 211 PHE HD1 H N N 212 PHE HD2 H N N 213 PHE HE1 H N N 214 PHE HE2 H N N 215 PHE HZ H N N 216 PHE HXT H N N 217 PRO N N N N 218 PRO CA C N S 219 PRO C C N N 220 PRO O O N N 221 PRO CB C N N 222 PRO CG C N N 223 PRO CD C N N 224 PRO OXT O N N 225 PRO H H N N 226 PRO HA H N N 227 PRO HB2 H N N 228 PRO HB3 H N N 229 PRO HG2 H N N 230 PRO HG3 H N N 231 PRO HD2 H N N 232 PRO HD3 H N N 233 PRO HXT H N N 234 SER N N N N 235 SER CA C N S 236 SER C C N N 237 SER O O N N 238 SER CB C N N 239 SER OG O N N 240 SER OXT O N N 241 SER H H N N 242 SER H2 H N N 243 SER HA H N N 244 SER HB2 H N N 245 SER HB3 H N N 246 SER HG H N N 247 SER HXT H N N 248 THR N N N N 249 THR CA C N S 250 THR C C N N 251 THR O O N N 252 THR CB C N R 253 THR OG1 O N N 254 THR CG2 C N N 255 THR OXT O N N 256 THR H H N N 257 THR H2 H N N 258 THR HA H N N 259 THR HB H N N 260 THR HG1 H N N 261 THR HG21 H N N 262 THR HG22 H N N 263 THR HG23 H N N 264 THR HXT H N N 265 TYR N N N N 266 TYR CA C N S 267 TYR C C N N 268 TYR O O N N 269 TYR CB C N N 270 TYR CG C Y N 271 TYR CD1 C Y N 272 TYR CD2 C Y N 273 TYR CE1 C Y N 274 TYR CE2 C Y N 275 TYR CZ C Y N 276 TYR OH O N N 277 TYR OXT O N N 278 TYR H H N N 279 TYR H2 H N N 280 TYR HA H N N 281 TYR HB2 H N N 282 TYR HB3 H N N 283 TYR HD1 H N N 284 TYR HD2 H N N 285 TYR HE1 H N N 286 TYR HE2 H N N 287 TYR HH H N N 288 TYR HXT H N N 289 VAL N N N N 290 VAL CA C N S 291 VAL C C N N 292 VAL O O N N 293 VAL CB C N N 294 VAL CG1 C N N 295 VAL CG2 C N N 296 VAL OXT O N N 297 VAL H H N N 298 VAL H2 H N N 299 VAL HA H N N 300 VAL HB H N N 301 VAL HG11 H N N 302 VAL HG12 H N N 303 VAL HG13 H N N 304 VAL HG21 H N N 305 VAL HG22 H N N 306 VAL HG23 H N N 307 VAL HXT H N N 308 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 CYS N CA sing N N 55 CYS N H sing N N 56 CYS N H2 sing N N 57 CYS CA C sing N N 58 CYS CA CB sing N N 59 CYS CA HA sing N N 60 CYS C O doub N N 61 CYS C OXT sing N N 62 CYS CB SG sing N N 63 CYS CB HB2 sing N N 64 CYS CB HB3 sing N N 65 CYS SG HG sing N N 66 CYS OXT HXT sing N N 67 GLN N CA sing N N 68 GLN N H sing N N 69 GLN N H2 sing N N 70 GLN CA C sing N N 71 GLN CA CB sing N N 72 GLN CA HA sing N N 73 GLN C O doub N N 74 GLN C OXT sing N N 75 GLN CB CG sing N N 76 GLN CB HB2 sing N N 77 GLN CB HB3 sing N N 78 GLN CG CD sing N N 79 GLN CG HG2 sing N N 80 GLN CG HG3 sing N N 81 GLN CD OE1 doub N N 82 GLN CD NE2 sing N N 83 GLN NE2 HE21 sing N N 84 GLN NE2 HE22 sing N N 85 GLN OXT HXT sing N N 86 GLY N CA sing N N 87 GLY N H sing N N 88 GLY N H2 sing N N 89 GLY CA C sing N N 90 GLY CA HA2 sing N N 91 GLY CA HA3 sing N N 92 GLY C O doub N N 93 GLY C OXT sing N N 94 GLY OXT HXT sing N N 95 HIS N CA sing N N 96 HIS N H sing N N 97 HIS N H2 sing N N 98 HIS CA C sing N N 99 HIS CA CB sing N N 100 HIS CA HA sing N N 101 HIS C O doub N N 102 HIS C OXT sing N N 103 HIS CB CG sing N N 104 HIS CB HB2 sing N N 105 HIS CB HB3 sing N N 106 HIS CG ND1 sing Y N 107 HIS CG CD2 doub Y N 108 HIS ND1 CE1 doub Y N 109 HIS ND1 HD1 sing N N 110 HIS CD2 NE2 sing Y N 111 HIS CD2 HD2 sing N N 112 HIS CE1 NE2 sing Y N 113 HIS CE1 HE1 sing N N 114 HIS NE2 HE2 sing N N 115 HIS OXT HXT sing N N 116 ILE N CA sing N N 117 ILE N H sing N N 118 ILE N H2 sing N N 119 ILE CA C sing N N 120 ILE CA CB sing N N 121 ILE CA HA sing N N 122 ILE C O doub N N 123 ILE C OXT sing N N 124 ILE CB CG1 sing N N 125 ILE CB CG2 sing N N 126 ILE CB HB sing N N 127 ILE CG1 CD1 sing N N 128 ILE CG1 HG12 sing N N 129 ILE CG1 HG13 sing N N 130 ILE CG2 HG21 sing N N 131 ILE CG2 HG22 sing N N 132 ILE CG2 HG23 sing N N 133 ILE CD1 HD11 sing N N 134 ILE CD1 HD12 sing N N 135 ILE CD1 HD13 sing N N 136 ILE OXT HXT sing N N 137 LEU N CA sing N N 138 LEU N H sing N N 139 LEU N H2 sing N N 140 LEU CA C sing N N 141 LEU CA CB sing N N 142 LEU CA HA sing N N 143 LEU C O doub N N 144 LEU C OXT sing N N 145 LEU CB CG sing N N 146 LEU CB HB2 sing N N 147 LEU CB HB3 sing N N 148 LEU CG CD1 sing N N 149 LEU CG CD2 sing N N 150 LEU CG HG sing N N 151 LEU CD1 HD11 sing N N 152 LEU CD1 HD12 sing N N 153 LEU CD1 HD13 sing N N 154 LEU CD2 HD21 sing N N 155 LEU CD2 HD22 sing N N 156 LEU CD2 HD23 sing N N 157 LEU OXT HXT sing N N 158 LYS N CA sing N N 159 LYS N H sing N N 160 LYS N H2 sing N N 161 LYS CA C sing N N 162 LYS CA CB sing N N 163 LYS CA HA sing N N 164 LYS C O doub N N 165 LYS C OXT sing N N 166 LYS CB CG sing N N 167 LYS CB HB2 sing N N 168 LYS CB HB3 sing N N 169 LYS CG CD sing N N 170 LYS CG HG2 sing N N 171 LYS CG HG3 sing N N 172 LYS CD CE sing N N 173 LYS CD HD2 sing N N 174 LYS CD HD3 sing N N 175 LYS CE NZ sing N N 176 LYS CE HE2 sing N N 177 LYS CE HE3 sing N N 178 LYS NZ HZ1 sing N N 179 LYS NZ HZ2 sing N N 180 LYS NZ HZ3 sing N N 181 LYS OXT HXT sing N N 182 NH2 N HN1 sing N N 183 NH2 N HN2 sing N N 184 PHE N CA sing N N 185 PHE N H sing N N 186 PHE N H2 sing N N 187 PHE CA C sing N N 188 PHE CA CB sing N N 189 PHE CA HA sing N N 190 PHE C O doub N N 191 PHE C OXT sing N N 192 PHE CB CG sing N N 193 PHE CB HB2 sing N N 194 PHE CB HB3 sing N N 195 PHE CG CD1 doub Y N 196 PHE CG CD2 sing Y N 197 PHE CD1 CE1 sing Y N 198 PHE CD1 HD1 sing N N 199 PHE CD2 CE2 doub Y N 200 PHE CD2 HD2 sing N N 201 PHE CE1 CZ doub Y N 202 PHE CE1 HE1 sing N N 203 PHE CE2 CZ sing Y N 204 PHE CE2 HE2 sing N N 205 PHE CZ HZ sing N N 206 PHE OXT HXT sing N N 207 PRO N CA sing N N 208 PRO N CD sing N N 209 PRO N H sing N N 210 PRO CA C sing N N 211 PRO CA CB sing N N 212 PRO CA HA sing N N 213 PRO C O doub N N 214 PRO C OXT sing N N 215 PRO CB CG sing N N 216 PRO CB HB2 sing N N 217 PRO CB HB3 sing N N 218 PRO CG CD sing N N 219 PRO CG HG2 sing N N 220 PRO CG HG3 sing N N 221 PRO CD HD2 sing N N 222 PRO CD HD3 sing N N 223 PRO OXT HXT sing N N 224 SER N CA sing N N 225 SER N H sing N N 226 SER N H2 sing N N 227 SER CA C sing N N 228 SER CA CB sing N N 229 SER CA HA sing N N 230 SER C O doub N N 231 SER C OXT sing N N 232 SER CB OG sing N N 233 SER CB HB2 sing N N 234 SER CB HB3 sing N N 235 SER OG HG sing N N 236 SER OXT HXT sing N N 237 THR N CA sing N N 238 THR N H sing N N 239 THR N H2 sing N N 240 THR CA C sing N N 241 THR CA CB sing N N 242 THR CA HA sing N N 243 THR C O doub N N 244 THR C OXT sing N N 245 THR CB OG1 sing N N 246 THR CB CG2 sing N N 247 THR CB HB sing N N 248 THR OG1 HG1 sing N N 249 THR CG2 HG21 sing N N 250 THR CG2 HG22 sing N N 251 THR CG2 HG23 sing N N 252 THR OXT HXT sing N N 253 TYR N CA sing N N 254 TYR N H sing N N 255 TYR N H2 sing N N 256 TYR CA C sing N N 257 TYR CA CB sing N N 258 TYR CA HA sing N N 259 TYR C O doub N N 260 TYR C OXT sing N N 261 TYR CB CG sing N N 262 TYR CB HB2 sing N N 263 TYR CB HB3 sing N N 264 TYR CG CD1 doub Y N 265 TYR CG CD2 sing Y N 266 TYR CD1 CE1 sing Y N 267 TYR CD1 HD1 sing N N 268 TYR CD2 CE2 doub Y N 269 TYR CD2 HD2 sing N N 270 TYR CE1 CZ doub Y N 271 TYR CE1 HE1 sing N N 272 TYR CE2 CZ sing Y N 273 TYR CE2 HE2 sing N N 274 TYR CZ OH sing N N 275 TYR OH HH sing N N 276 TYR OXT HXT sing N N 277 VAL N CA sing N N 278 VAL N H sing N N 279 VAL N H2 sing N N 280 VAL CA C sing N N 281 VAL CA CB sing N N 282 VAL CA HA sing N N 283 VAL C O doub N N 284 VAL C OXT sing N N 285 VAL CB CG1 sing N N 286 VAL CB CG2 sing N N 287 VAL CB HB sing N N 288 VAL CG1 HG11 sing N N 289 VAL CG1 HG12 sing N N 290 VAL CG1 HG13 sing N N 291 VAL CG2 HG21 sing N N 292 VAL CG2 HG22 sing N N 293 VAL CG2 HG23 sing N N 294 VAL OXT HXT sing N N 295 # _em_admin.current_status REL _em_admin.deposition_date 2023-11-02 _em_admin.deposition_site PDBE _em_admin.entry_id 8QVP _em_admin.last_update 2025-08-13 _em_admin.map_release_date 2025-08-13 _em_admin.title 'Cryo-EM structure of human islet amyloid polypeptide (hIAPP) mutant S29P, polymorph 1' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.ncbi_tax_id 32630 _em_entity_assembly_recombinant.organism 'synthetic construct' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C2 _em_helical_entity.angular_rotation_per_subunit -3.28 _em_helical_entity.axial_rise_per_subunit 4.76 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 58 _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 QUANTUM (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? RELION ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU 2.12.1 ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot 0.9.8.8 ? OTHER ? 8 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? PHENIX 1.21 ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? RELION 4.0.0 ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration 0.4 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Swedish Research Council' Sweden 'VR 2020-05403' 1 'Other private' Sweden 'Swedish Society for Medical Research (S20-0156)' 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8QVP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_ #