HEADER IMMUNE SYSTEM 25-OCT-23 8QY9 TITLE J22.9-H, FULLY HUMANIZED FAB FRAGMENT BASED ON CHIMERIC J22.9-XI IGG TITLE 2 AGAINST BCMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAINS: L; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CHAINS: H; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: CHAINS: A; COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: EXTRACELLULAR DOMAIN OF BCMA (B-CELL MATURATION COMPND 14 ANTIGEN, CD269) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: 293_6E; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: 293_6E; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FAB FRAGMENT, HUMANIZED, BCMA BINDING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.F.MARINO,O.DAUMKE REVDAT 1 17-JAN-24 8QY9 0 JRNL AUTH S.F.MARINO,O.DAUMKE JRNL TITL STRUCTURE-BASED HUMANIZATION OF A THERAPEUTIC ANTIBODY FOR JRNL TITL 2 MULTIPLE MYELOMA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.F.MARINO REMARK 1 TITL POTENT ANTI-TUMOR RESPONSE BY TARGETING B CELL MATURATION REMARK 1 TITL 2 ANTIGEN (BCMA) IN A MOUSE MODEL OF MULTIPLE MYELOMA. REMARK 1 REF MOL ONCOL V. 9 1348 2015 REMARK 1 REFN ISSN 1878-0261 REMARK 1 PMID 25953704 REMARK 1 DOI 10.1038/NI.2527 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 9580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.311 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7800 - 4.4700 1.00 3106 164 0.2109 0.2524 REMARK 3 2 4.4700 - 3.5500 0.99 3010 159 0.2928 0.3657 REMARK 3 3 3.5500 - 3.1000 1.00 2984 157 0.3422 0.3754 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.426 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3607 REMARK 3 ANGLE : 0.443 4920 REMARK 3 CHIRALITY : 0.041 555 REMARK 3 PLANARITY : 0.003 634 REMARK 3 DIHEDRAL : 12.915 1284 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5289 12.4882 38.5812 REMARK 3 T TENSOR REMARK 3 T11: 0.3857 T22: 0.5987 REMARK 3 T33: 0.5549 T12: -0.0292 REMARK 3 T13: 0.0342 T23: 0.0492 REMARK 3 L TENSOR REMARK 3 L11: 0.4998 L22: 1.0368 REMARK 3 L33: 3.3912 L12: -0.5147 REMARK 3 L13: 0.0545 L23: -1.3553 REMARK 3 S TENSOR REMARK 3 S11: -0.1286 S12: -0.3516 S13: -0.2943 REMARK 3 S21: 0.1624 S22: -0.0562 S23: -0.0982 REMARK 3 S31: -0.1375 S32: 0.4180 S33: 0.2302 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2949 0.0258 25.4201 REMARK 3 T TENSOR REMARK 3 T11: 0.3793 T22: 0.4398 REMARK 3 T33: 0.5288 T12: -0.0092 REMARK 3 T13: 0.1331 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 1.6796 L22: 1.2943 REMARK 3 L33: 3.4055 L12: -0.5536 REMARK 3 L13: -0.1162 L23: -1.4573 REMARK 3 S TENSOR REMARK 3 S11: -0.1285 S12: 0.1785 S13: -0.3817 REMARK 3 S21: -0.1450 S22: -0.0836 S23: 0.0026 REMARK 3 S31: 0.6203 S32: 0.0672 S33: 0.2670 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7628 32.2450 5.9965 REMARK 3 T TENSOR REMARK 3 T11: 1.0646 T22: 1.0140 REMARK 3 T33: 0.5409 T12: 0.0514 REMARK 3 T13: 0.2490 T23: 0.1565 REMARK 3 L TENSOR REMARK 3 L11: 2.5016 L22: 4.0908 REMARK 3 L33: 1.8252 L12: -0.1254 REMARK 3 L13: 0.7071 L23: -1.5345 REMARK 3 S TENSOR REMARK 3 S11: 0.4294 S12: 0.6712 S13: 0.6395 REMARK 3 S21: 0.5163 S22: -0.3157 S23: 0.9701 REMARK 3 S31: -1.1780 S32: 0.7010 S33: -0.2770 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292133975. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9584 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 34.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.140 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 3350 100 MM BISTRIS 7.5 MM REMARK 280 CU(II), PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.68000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.59000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.68000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.59000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H1 GLU L 1 CU CU L 301 1.39 REMARK 500 HD21 ASN L 137 CU CU H 301 1.56 REMARK 500 O HOH L 401 O HOH L 413 2.06 REMARK 500 O HOH H 405 O HOH H 414 2.07 REMARK 500 OG SER H 17 OD1 ASN H 84 2.13 REMARK 500 O ASP H 66 N PHE H 68 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 411 O HOH L 418 4546 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS L 23 81.90 -154.49 REMARK 500 ASP L 30 -150.56 59.35 REMARK 500 ALA L 51 -58.63 68.76 REMARK 500 ASN L 138 90.74 59.58 REMARK 500 PRO L 141 -170.83 -68.54 REMARK 500 GLU L 143 108.33 -50.62 REMARK 500 LYS L 169 -80.41 -91.79 REMARK 500 SER L 208 -167.44 -118.98 REMARK 500 THR H 28 94.51 -59.35 REMARK 500 VAL H 48 -72.98 -108.10 REMARK 500 THR H 57 102.82 -161.26 REMARK 500 ASP H 66 -67.69 59.06 REMARK 500 LYS H 67 -65.71 16.43 REMARK 500 SER H 98 101.85 -167.29 REMARK 500 THR H 114 93.26 -161.81 REMARK 500 SER H 119 148.04 -172.53 REMARK 500 PRO H 133 -171.02 -67.30 REMARK 500 CYS H 147 101.22 -170.16 REMARK 500 ASP H 151 86.91 61.47 REMARK 500 SER H 195 32.30 -90.15 REMARK 500 LYS H 213 106.95 -163.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 418 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH H 419 DISTANCE = 6.70 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU L 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU L 1 N REMARK 620 2 HIS L 189 NE2 15.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU H 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN L 137 OD1 REMARK 620 2 ASN L 137 ND2 63.8 REMARK 620 3 GLU H 1 OE1 118.0 164.2 REMARK 620 4 GLU H 1 OE2 120.7 166.4 3.8 REMARK 620 5 HIS H 171 NE2 96.4 148.3 23.0 26.5 REMARK 620 N 1 2 3 4 DBREF 8QY9 L 1 211 PDB 8QY9 8QY9 1 211 DBREF 8QY9 H 1 221 PDB 8QY9 8QY9 1 221 DBREF 8QY9 A 7 41 PDB 8QY9 8QY9 7 41 SEQRES 1 L 211 GLU ILE VAL MET THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 L 211 SER PRO GLY GLU ARG ALA THR LEU SER CYS LYS ALA SER SEQRES 3 L 211 GLN SER VAL ASP SER ASN VAL ALA TRP TYR GLN GLN LYS SEQRES 4 L 211 PRO GLY GLN ALA PRO ARG ALA LEU ILE TYR SER ALA SER SEQRES 5 L 211 LEU ARG PHE SER GLY ILE PRO ALA ARG PHE SER GLY SER SEQRES 6 L 211 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 211 GLN SER GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN TYR SEQRES 8 L 211 ASN ASN TYR PRO LEU THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 L 211 GLU LEU LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 211 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 211 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 211 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 211 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 211 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 211 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 211 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 211 PHE ASN ARG SEQRES 1 H 215 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 215 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 215 PHE THR PHE SER ARG TYR TRP MET SER TRP VAL ARG GLN SEQRES 4 H 215 ALA PRO GLY LYS GLY LEU VAL TRP VAL GLY GLU ILE ASN SEQRES 5 H 215 PRO ASP SER SER THR ILE ASN TYR ALA PRO SER LEU LYS SEQRES 6 H 215 ASP LYS PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 H 215 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 215 ALA VAL TYR TYR CYS ALA SER LEU TYR TYR ASP TYR GLY SEQRES 9 H 215 ASP ALA MET ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 H 215 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 215 LEU ALA PRO SER GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 12 H 215 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 13 H 215 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 14 H 215 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 15 H 215 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 16 H 215 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 17 H 215 ASP LYS ARG VAL GLU PRO ALA SEQRES 1 A 35 GLN CYS SER ALA ASN GLU TYR PHE ASP SER LEU LEU HIS SEQRES 2 A 35 ALA CYS ILE PRO CYS GLN LEU ARG CYS SER SER ALA THR SEQRES 3 A 35 PRO PRO ALA THR CYS ALA ALA TYR CYS HET CU L 301 1 HET CU H 301 1 HETNAM CU COPPER (II) ION FORMUL 4 CU 2(CU 2+) FORMUL 6 HOH *43(H2 O) HELIX 1 AA1 GLN L 79 PHE L 83 5 5 HELIX 2 AA2 GLU L 123 GLY L 128 1 6 HELIX 3 AA3 LYS L 183 HIS L 189 1 7 HELIX 4 AA4 THR H 28 TYR H 32 5 5 HELIX 5 AA5 ARG H 87 THR H 91 5 5 HELIX 6 AA6 SER H 163 ALA H 165 5 3 HELIX 7 AA7 CYS A 24 SER A 29 1 6 HELIX 8 AA8 PRO A 34 TYR A 40 5 7 SHEET 1 AA1 2 MET L 4 SER L 7 0 SHEET 2 AA1 2 SER L 22 ALA L 25 -1 O LYS L 24 N THR L 5 SHEET 1 AA2 5 THR L 10 VAL L 13 0 SHEET 2 AA2 5 THR L 102 LEU L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA2 5 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA2 5 VAL L 33 GLN L 38 -1 N ALA L 34 O GLN L 89 SHEET 5 AA2 5 ARG L 45 ILE L 48 -1 O ARG L 45 N GLN L 37 SHEET 1 AA3 3 ALA L 19 THR L 20 0 SHEET 2 AA3 3 GLU L 70 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 3 AA3 3 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA4 4 SER L 114 PHE L 118 0 SHEET 2 AA4 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AA4 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AA4 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AA5 3 LYS L 145 VAL L 150 0 SHEET 2 AA5 3 VAL L 191 THR L 197 -1 O THR L 197 N LYS L 145 SHEET 3 AA5 3 VAL L 205 THR L 206 -1 O VAL L 205 N VAL L 196 SHEET 1 AA6 3 LYS L 145 VAL L 150 0 SHEET 2 AA6 3 VAL L 191 THR L 197 -1 O THR L 197 N LYS L 145 SHEET 3 AA6 3 PHE L 209 ASN L 210 -1 O PHE L 209 N TYR L 192 SHEET 1 AA7 4 GLN H 3 SER H 7 0 SHEET 2 AA7 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA7 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA7 4 PHE H 68 ASP H 73 -1 N THR H 69 O GLN H 82 SHEET 1 AA8 6 LEU H 11 VAL H 12 0 SHEET 2 AA8 6 LEU H 115 VAL H 118 1 O THR H 117 N VAL H 12 SHEET 3 AA8 6 ALA H 92 ASP H 102 -1 N ALA H 92 O VAL H 116 SHEET 4 AA8 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA8 6 LEU H 45 ILE H 51 -1 O VAL H 46 N ARG H 38 SHEET 6 AA8 6 ILE H 58 ASN H 59 -1 O ASN H 59 N GLU H 50 SHEET 1 AA9 4 LEU H 11 VAL H 12 0 SHEET 2 AA9 4 LEU H 115 VAL H 118 1 O THR H 117 N VAL H 12 SHEET 3 AA9 4 ALA H 92 ASP H 102 -1 N ALA H 92 O VAL H 116 SHEET 4 AA9 4 ASP H 105 TYR H 109 -1 O MET H 107 N TYR H 100 SHEET 1 AB1 4 SER H 127 LEU H 131 0 SHEET 2 AB1 4 THR H 142 TYR H 152 -1 O LEU H 148 N PHE H 129 SHEET 3 AB1 4 TYR H 183 PRO H 192 -1 O TYR H 183 N TYR H 152 SHEET 4 AB1 4 VAL H 170 THR H 172 -1 N HIS H 171 O VAL H 188 SHEET 1 AB2 4 SER H 127 LEU H 131 0 SHEET 2 AB2 4 THR H 142 TYR H 152 -1 O LEU H 148 N PHE H 129 SHEET 3 AB2 4 TYR H 183 PRO H 192 -1 O TYR H 183 N TYR H 152 SHEET 4 AB2 4 VAL H 176 LEU H 177 -1 N VAL H 176 O SER H 184 SHEET 1 AB3 3 THR H 158 TRP H 161 0 SHEET 2 AB3 3 TYR H 201 HIS H 207 -1 O ASN H 204 N SER H 160 SHEET 3 AB3 3 THR H 212 VAL H 218 -1 O VAL H 214 N VAL H 205 SHEET 1 AB4 2 GLU A 12 ASP A 15 0 SHEET 2 AB4 2 ALA A 20 PRO A 23 -1 O ILE A 22 N TYR A 13 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 4 CYS H 147 CYS H 203 1555 1555 2.03 SSBOND 5 CYS A 8 CYS A 21 1555 1555 2.03 SSBOND 6 CYS A 24 CYS A 37 1555 1555 2.03 SSBOND 7 CYS A 28 CYS A 41 1555 1555 2.03 LINK N GLU L 1 CU CU L 301 1555 1555 2.04 LINK OD1 ASN L 137 CU CU H 301 1555 1555 2.10 LINK ND2 ASN L 137 CU CU H 301 1555 1555 2.15 LINK NE2 HIS L 189 CU CU L 301 1555 4546 2.14 LINK OE1 GLU H 1 CU CU H 301 1555 2556 2.69 LINK OE2 GLU H 1 CU CU H 301 1555 2556 1.93 LINK NE2 HIS H 171 CU CU H 301 1555 1555 2.03 CISPEP 1 SER L 7 PRO L 8 0 -1.76 CISPEP 2 TYR L 94 PRO L 95 0 -2.12 CISPEP 3 TYR L 140 PRO L 141 0 0.60 CISPEP 4 PHE H 153 PRO H 154 0 -0.62 CISPEP 5 GLU H 155 PRO H 156 0 -5.02 CRYST1 137.360 55.180 81.160 90.00 121.02 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007280 0.000000 0.004378 0.00000 SCALE2 0.000000 0.018123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014378 0.00000