HEADER TRANSFERASE 30-OCT-23 8QZW TITLE CRYSTAL STRUCTURE OF DEOXYHYPUSINE SYNTHASE FROM TRICHOMONAS VAGINALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYHYPUSINE SYNTHASE RELATED PROTEIN, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS; SOURCE 3 ORGANISM_TAXID: 5722; SOURCE 4 STRAIN: BL21(DE3); SOURCE 5 VARIANT: ROSETTA; SOURCE 6 GENE: TVAG_359990; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA KEYWDS TRANSLATION, HYPUSINATION, HYPUSINE, EIF5A, DEOXYHYPUSINE, KEYWDS 2 DEOXYHYPUSINATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.WATOR,P.WILK,P.GRUDNIK REVDAT 3 23-OCT-24 8QZW 1 JRNL REVDAT 2 10-JUL-24 8QZW 1 JRNL REVDAT 1 03-JUL-24 8QZW 0 JRNL AUTH E.WATOR,P.WILK,P.KOCHANOWSKI,P.GRUDNIK JRNL TITL STRUCTURAL CHARACTERIZATION OF THE (DEOXY)HYPUSINATION IN JRNL TITL 2 TRICHOMONAS VAGINALIS QUESTIONS THE BIFUNCTIONALITY OF JRNL TITL 3 DEOXYHYPUSINE SYNTHASE. JRNL REF FEBS J. V. 291 3856 2024 JRNL REFN ISSN 1742-464X JRNL PMID 38923395 JRNL DOI 10.1111/FEBS.17207 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 114807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.830 REMARK 3 FREE R VALUE TEST SET COUNT : 2097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4200 - 4.1300 1.00 7960 149 0.1404 0.1471 REMARK 3 2 4.1300 - 3.2800 1.00 7683 143 0.1234 0.1232 REMARK 3 3 3.2800 - 2.8700 1.00 7596 141 0.1322 0.1400 REMARK 3 4 2.8700 - 2.6000 1.00 7602 142 0.1329 0.1393 REMARK 3 5 2.6000 - 2.4200 1.00 7523 140 0.1290 0.1562 REMARK 3 6 2.4200 - 2.2700 1.00 7553 140 0.1356 0.1339 REMARK 3 7 2.2700 - 2.1600 1.00 7492 140 0.1400 0.1657 REMARK 3 8 2.1600 - 2.0700 1.00 7526 140 0.1564 0.1695 REMARK 3 9 2.0700 - 1.9900 1.00 7475 139 0.1692 0.1737 REMARK 3 10 1.9900 - 1.9200 1.00 7487 139 0.1857 0.2228 REMARK 3 11 1.9200 - 1.8600 1.00 7467 140 0.2283 0.2954 REMARK 3 12 1.8600 - 1.8100 1.00 7456 138 0.2492 0.2164 REMARK 3 13 1.8100 - 1.7600 1.00 7450 139 0.2926 0.2813 REMARK 3 14 1.7600 - 1.7200 1.00 7429 137 0.3140 0.2846 REMARK 3 15 1.7200 - 1.6800 0.94 7011 130 0.3741 0.3622 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 NULL REMARK 3 ANGLE : 1.150 NULL REMARK 3 CHIRALITY : 0.065 440 REMARK 3 PLANARITY : 0.008 515 REMARK 3 DIHEDRAL : 14.703 1102 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292134287. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DCM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114945 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 48.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 14.67 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 14.40 REMARK 200 R MERGE FOR SHELL (I) : 2.44300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROPLEX G3: 0.1M HEPES PH 7.0; 2M REMARK 280 (NH4)2SO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 61.57250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 61.57250 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 131.66300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 61.57250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.83150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 61.57250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 197.49450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 61.57250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 197.49450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.57250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.83150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 61.57250 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 61.57250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 131.66300 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 61.57250 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 61.57250 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 131.66300 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 61.57250 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 197.49450 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 61.57250 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 65.83150 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.57250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 65.83150 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 61.57250 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 197.49450 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 61.57250 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 61.57250 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 131.66300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 45190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -631.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -61.57250 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 61.57250 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 131.66300 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 123.14500 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 61.57250 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 61.57250 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 131.66300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 406 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 843 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 894 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 SER A -2 REMARK 465 ARG A -1 REMARK 465 ALA A 0 REMARK 465 PRO A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 SO4 A 407 HO3 GOL A 410 1.26 REMARK 500 HZ3 LYS A 328 O2 GOL A 409 1.54 REMARK 500 HZ2 LYS A 120 O1 GOL A 411 1.56 REMARK 500 O3 SO4 A 407 O3 GOL A 410 1.63 REMARK 500 O1 SO4 A 405 O HOH A 501 1.95 REMARK 500 O HOH A 702 O HOH A 751 1.95 REMARK 500 NZ LYS A 328 O2 GOL A 409 2.13 REMARK 500 O4 SO4 A 408 O HOH A 502 2.14 REMARK 500 O HOH A 567 O HOH A 719 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 516 O HOH A 582 10565 2.12 REMARK 500 O HOH A 613 O HOH A 689 16555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 49 -134.56 48.40 REMARK 500 SER A 232 79.86 -164.17 REMARK 500 ALA A 234 54.27 -100.81 REMARK 500 ASN A 251 79.41 -156.34 REMARK 500 SER A 353 -81.42 -129.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 900 DISTANCE = 6.32 ANGSTROMS DBREF 8QZW A -3 360 UNP A2DTB8 A2DTB8_TRIV3 1 364 SEQRES 1 A 364 MET SER ARG ALA PRO SER LEU ALA PRO SER LEU ALA VAL SEQRES 2 A 364 ASP SER VAL PHE VAL GLU SER GLU GLU LEU THR THR PRO SEQRES 3 A 364 LEU VAL LYS GLY TYR VAL PRO ASP ASP ASN GLY LYS PHE SEQRES 4 A 364 ASP PHE ASP LYS MET LEU GLU GLN MET LYS TYR CYS GLY SEQRES 5 A 364 PHE GLN ALA THR ASN LEU GLY LEU ALA ILE ASP GLN ILE SEQRES 6 A 364 ASN GLU MET LEU HIS TYR ASP TYR GLU PRO GLN PRO GLY SEQRES 7 A 364 ASP GLU LYS LYS LEU PHE GLY LEU GLY GLY GLY VAL GLU SEQRES 8 A 364 GLY VAL LYS TYR LYS PRO ARG ALA CYS LYS ILE PHE LEU SEQRES 9 A 364 GLY ILE THR SER ASN LEU ILE SER SER GLY MET ARG ASP SEQRES 10 A 364 TYR ILE ARG PHE LEU VAL LYS HIS ALA LEU VAL ASP VAL SEQRES 11 A 364 VAL VAL CYS THR ALA GLY GLY ILE GLU GLU ASP PHE ILE SEQRES 12 A 364 LYS CYS LEU ALA PRO THR HIS MET GLY GLU PHE PHE HIS SEQRES 13 A 364 ASP GLY HIS ASP LEU ARG LYS ARG GLY LEU ASN ARG ILE SEQRES 14 A 364 GLY ASN LEU ILE VAL PRO ASN LYS ASN TYR CSS LEU PHE SEQRES 15 A 364 GLU ASP TRP ILE MET PRO ILE LEU ASP LYS CYS LEU GLU SEQRES 16 A 364 GLU GLN ASN THR GLN GLY THR LYS TRP THR PRO SER LYS SEQRES 17 A 364 LEU ILE HIS ARG LEU GLY LEU GLU ILE ASN ASN GLU ASP SEQRES 18 A 364 SER VAL TRP TYR TRP ALA ALA LYS ASN ASN ILE PRO VAL SEQRES 19 A 364 TYR SER PRO ALA LEU THR ASP GLY SER ILE GLY ASP MET SEQRES 20 A 364 ILE TYR PHE HIS SER TYR ASN ASN PRO GLY LEU VAL LEU SEQRES 21 A 364 ASP LEU VAL GLU ASP ILE ARG ASP MET ASN ASN GLU PRO SEQRES 22 A 364 LEU TRP ALA THR LYS THR GLY CYS ILE ILE LEU GLY GLY SEQRES 23 A 364 GLY VAL VAL LYS HIS HIS ILE MET ASN ALA ASN LEU TYR SEQRES 24 A 364 ARG ASN GLY ALA ASP PHE VAL VAL TYR VAL ASN THR ALA SEQRES 25 A 364 HIS ASP PHE ASP GLY SER ASP SER GLY ALA ARG PRO ASP SEQRES 26 A 364 GLU ALA VAL SER TRP GLY LYS ILE SER LEU GLU ALA LYS SEQRES 27 A 364 PRO VAL LYS VAL TYR ALA GLU VAL THR LEU VAL LEU PRO SEQRES 28 A 364 LEU LEU VAL ALA GLY SER PHE SER LYS PHE LEU ALA GLU MODRES 8QZW CSS A 176 CYS MODIFIED RESIDUE HET CSS A 176 7 HET NAD A 401 70 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET GOL A 409 14 HET GOL A 410 14 HET GOL A 411 14 HET GOL A 412 14 HETNAM CSS S-MERCAPTOCYSTEINE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSS C3 H7 N O2 S2 FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 SO4 7(O4 S 2-) FORMUL 10 GOL 4(C3 H8 O3) FORMUL 14 HOH *400(H2 O) HELIX 1 AA1 PRO A 5 PHE A 13 1 9 HELIX 2 AA2 ASP A 36 MET A 44 1 9 HELIX 3 AA3 LYS A 45 CYS A 47 5 3 HELIX 4 AA4 GLY A 48 TYR A 67 1 20 HELIX 5 AA5 THR A 103 SER A 109 1 7 HELIX 6 AA6 GLY A 110 HIS A 121 1 12 HELIX 7 AA7 THR A 130 ALA A 143 1 14 HELIX 8 AA8 ASP A 153 ARG A 160 1 8 HELIX 9 AA9 ASN A 172 GLY A 197 1 26 HELIX 10 AB1 THR A 201 ASN A 214 1 14 HELIX 11 AB2 SER A 218 ASN A 226 1 9 HELIX 12 AB3 GLY A 238 ASN A 251 1 14 HELIX 13 AB4 LEU A 258 GLU A 268 1 11 HELIX 14 AB5 GLY A 283 TYR A 295 1 13 HELIX 15 AB6 HIS A 309 GLY A 313 5 5 HELIX 16 AB7 ARG A 319 TRP A 326 1 8 HELIX 17 AB8 GLU A 341 LEU A 344 5 4 HELIX 18 AB9 VAL A 345 SER A 353 1 9 HELIX 19 AC1 SER A 353 GLU A 360 1 8 SHEET 1 AA1 6 VAL A 230 TYR A 231 0 SHEET 2 AA1 6 VAL A 126 CYS A 129 1 N VAL A 127 O TYR A 231 SHEET 3 AA1 6 CYS A 96 ILE A 102 1 N LEU A 100 O VAL A 126 SHEET 4 AA1 6 LYS A 274 LEU A 280 1 O LEU A 280 N GLY A 101 SHEET 5 AA1 6 PHE A 301 ASN A 306 1 O VAL A 303 N ILE A 279 SHEET 6 AA1 6 VAL A 336 TYR A 339 1 O VAL A 338 N TYR A 304 SHEET 1 AA2 3 HIS A 146 MET A 147 0 SHEET 2 AA2 3 LEU A 168 PRO A 171 -1 O ILE A 169 N HIS A 146 SHEET 3 AA2 3 LEU A 162 ILE A 165 -1 N ASN A 163 O VAL A 170 LINK C TYR A 175 N CSS A 176 1555 1555 1.32 LINK C CSS A 176 N LEU A 177 1555 1555 1.32 CRYST1 123.145 123.145 263.326 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008121 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008121 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003798 0.00000