HEADER DNA BINDING PROTEIN 02-NOV-23 8R1X TITLE SOLUTION STRUCTURE AND CHEMICAL SHIFT ASSIGNMENTS FOR HMG-D Y12F TITLE 2 MUTANT COMPLEXED TO A 14:12 DA2 BULGE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN D; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*GP*AP*TP*AP*TP*TP*AP*AP*GP*AP*GP*CP*C)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*GP*GP*CP*TP*CP*AP*AP*TP*AP*TP*CP*G)-3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: HMGD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 OTHER_DETAILS: THE DNA LIGAND (CHAINS B AND C) WAS DESIGNED TO BE A SOURCE 13 STRUCTURAL MIMIC OF BENT DNA; IT IS NOT BASED ON ANY SPECIFIC SOURCE 14 NATURAL SEQUENCE.; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 OTHER_DETAILS: THE DNA LIGAND (CHAINS B AND C) WAS DESIGNED TO BE A SOURCE 20 STRUCTURAL MIMIC OF BENT DNA; IT IS NOT BASED ON ANY SPECIFIC SOURCE 21 NATURAL SEQUENCE. KEYWDS HMG PROTEIN, DNA-BINDING PROTEIN, PROTEIN-DNA COMPLEX, DNA BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.C.YANG,G.R.HILL,D.NEUHAUS REVDAT 1 11-SEP-24 8R1X 0 SPRSDE 11-SEP-24 8R1X 1E7J JRNL AUTH G.HILL,J.C.YANG,L.EASTON,R.CERDAN,S.MCLAUGHLIN,K.STOTT, JRNL AUTH 2 A.TRAVERS,D.NEUHAUS JRNL TITL A SINGLE INTERFACIAL POINT MUTATION RESCUES SOLUTION JRNL TITL 2 STRUCTURE DETERMINATION OF THE COMPLEX OF HMG-D WITH A DNA JRNL TITL 3 BULGE. JRNL REF CHEMBIOCHEM 00395 2024 JRNL REFN ESSN 1439-7633 JRNL PMID 39145407 JRNL DOI 10.1002/CBIC.202400395 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 11 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8R1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1292134030. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 83 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.8 MM [U-13C; U-15N] HMG-D REMARK 210 Y12F, 1.8 MM DNA (5'-D(*CP*GP*AP*TP*AP*TP*TP*AP*AP*GP*AP*GP*CP*C) REMARK 210 -3'), 1.8 MM DNA (5'-D(*GP*GP*CP*TP*CP*AP*AP*TP*AP*TP*CP*G)-3'), REMARK 210 10 MM SODIUM PHOSPHATE, 20 MM SODIUM CHLORIDE, 3 MM SODIUM AZIDE, REMARK 210 95% H2O/5% D2O; 1.8 MM [U-13C; U-15N] HMG-D Y12F, 1.8 MM DNA (5' REMARK 210 -D(*CP*GP*AP*TP*AP*TP*TP*AP*AP*GP*AP*GP*CP*C)-3'), 1.8 MM DNA (5' REMARK 210 -D(*GP*GP*CP*TP*CP*AP*AP*TP*AP*TP*CP*G)-3'), 10 MM SODIUM REMARK 210 PHOSPHATE, 20 MM SODIUM CHLORIDE, 3 MM SODIUM AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H NOESY (MIXING TIME = 60 REMARK 210 MS); 2D 1H-1H NOESY (MIXING TIME REMARK 210 = 150 MS); 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HNCACB; 3D HBHANH; 3D HBHA(CO) REMARK 210 NH; 3D HCCH-COSY; 3D HCCH-TOCSY; REMARK 210 3D 1H-15N NOESY (MIXING TIME = REMARK 210 150 MS); 3D 1H-13C NOESY REMARK 210 ALIPHATIC (MIXING TIME = 150 MS); REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 (MIXING TIME = 150 MS); 2D [13C, REMARK 210 15N]-FILTERED [1H-1H] NOESY REMARK 210 (MIXING TIME = 100 MS, WITH REMARK 210 FILTER ELEMENTS SET TO REJECT REMARK 210 13C AND 15N COUPLED SIGNALS IN REMARK 210 F1 AND TO ACCEPT ONLY 13C REMARK 210 COUPLED SIGNALS IN F2); 2D [13C, REMARK 210 15N]-FILTERED [1H-1H] NOESY REMARK 210 (MIXING TIME = 200 MS, WITH REMARK 210 FILTER ELEMENTS SET TO REJECT REMARK 210 13C AND 15N COUPLED SIGNALS IN REMARK 210 F1 AND TO ACCEPT ONLY 13C REMARK 210 COUPLED SIGNALS IN F2); 13C- REMARK 210 FILTERED 13C NOESY-HSQC (MIXING REMARK 210 TIME = 150 MS, WITH FILTER REMARK 210 ELEMENTS SET TO REJECT 13C- AND REMARK 210 15N-COUPLED (PROTEIN) SIGNALS IN REMARK 210 F1) REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.2 AND 3.5, SPARKY REMARK 210 3.115, X-PLOR NIH 2.28 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 75 REMARK 465 SER A 76 REMARK 465 SER A 77 REMARK 465 ALA A 78 REMARK 465 ALA A 79 REMARK 465 ASN A 80 REMARK 465 GLY A 81 REMARK 465 GLY A 82 REMARK 465 GLY A 83 REMARK 465 ALA A 84 REMARK 465 LYS A 85 REMARK 465 LYS A 86 REMARK 465 ARG A 87 REMARK 465 ALA A 88 REMARK 465 LYS A 89 REMARK 465 PRO A 90 REMARK 465 ALA A 91 REMARK 465 LYS A 92 REMARK 465 LYS A 93 REMARK 465 VAL A 94 REMARK 465 ALA A 95 REMARK 465 LYS A 96 REMARK 465 LYS A 97 REMARK 465 SER A 98 REMARK 465 LYS A 99 REMARK 465 LYS A 100 REMARK 465 GLU A 101 REMARK 465 GLU A 102 REMARK 465 SER A 103 REMARK 465 ASP A 104 REMARK 465 GLU A 105 REMARK 465 ASP A 106 REMARK 465 ASP A 107 REMARK 465 ASP A 108 REMARK 465 ASP A 109 REMARK 465 GLU A 110 REMARK 465 SER A 111 REMARK 465 GLU A 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 20 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 DC B 1 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DC B 1 N3 - C2 - O2 ANGL. DEV. = -5.1 DEGREES REMARK 500 1 DA B 3 C4 - C5 - C6 ANGL. DEV. = -3.1 DEGREES REMARK 500 1 DA B 3 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 DA B 3 N1 - C6 - N6 ANGL. DEV. = -4.9 DEGREES REMARK 500 1 DA B 5 C4 - C5 - C6 ANGL. DEV. = -3.3 DEGREES REMARK 500 1 DA B 5 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 DA B 5 N1 - C6 - N6 ANGL. DEV. = -5.2 DEGREES REMARK 500 1 DA B 8 C4 - C5 - C6 ANGL. DEV. = -3.3 DEGREES REMARK 500 1 DA B 8 C5 - C6 - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DA B 8 N1 - C6 - N6 ANGL. DEV. = -5.4 DEGREES REMARK 500 1 DA B 9 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 1 DA B 9 C4 - C5 - C6 ANGL. DEV. = -3.2 DEGREES REMARK 500 1 DA B 9 C5 - C6 - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DA B 9 N1 - C6 - N6 ANGL. DEV. = -5.2 DEGREES REMARK 500 1 DG B 10 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 1 DA B 11 C4 - C5 - C6 ANGL. DEV. = -3.8 DEGREES REMARK 500 1 DA B 11 C5 - C6 - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 DA B 11 N1 - C6 - N6 ANGL. DEV. = -4.3 DEGREES REMARK 500 1 DG B 12 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 1 DC B 13 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 DC B 14 N3 - C2 - O2 ANGL. DEV. = -5.4 DEGREES REMARK 500 1 DG C 15 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DG C 16 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 1 DC C 17 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DC C 17 N1 - C2 - O2 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DC C 17 N3 - C2 - O2 ANGL. DEV. = -5.1 DEGREES REMARK 500 1 DT C 18 C6 - C5 - C7 ANGL. DEV. = -3.6 DEGREES REMARK 500 1 DC C 19 N3 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 1 DA C 20 C5 - C6 - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DA C 20 N1 - C6 - N6 ANGL. DEV. = -4.3 DEGREES REMARK 500 1 DA C 21 C4 - C5 - C6 ANGL. DEV. = -3.1 DEGREES REMARK 500 1 DA C 21 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DA C 21 N1 - C6 - N6 ANGL. DEV. = -4.5 DEGREES REMARK 500 1 DA C 23 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 1 DA C 23 C4 - C5 - C6 ANGL. DEV. = -3.2 DEGREES REMARK 500 1 DA C 23 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DA C 23 N1 - C6 - N6 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 DT C 24 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DT C 24 C6 - C5 - C7 ANGL. DEV. = -3.6 DEGREES REMARK 500 1 DC C 25 N3 - C2 - O2 ANGL. DEV. = -5.1 DEGREES REMARK 500 2 ARG A 7 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 DC B 1 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 DC B 1 N3 - C2 - O2 ANGL. DEV. = -5.0 DEGREES REMARK 500 2 DA B 3 C4 - C5 - C6 ANGL. DEV. = -3.2 DEGREES REMARK 500 2 DA B 3 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 DA B 3 N1 - C6 - N6 ANGL. DEV. = -4.9 DEGREES REMARK 500 2 DA B 5 C4 - C5 - C6 ANGL. DEV. = -3.2 DEGREES REMARK 500 2 DA B 5 C5 - C6 - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 863 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 4 74.95 53.40 REMARK 500 1 ARG A 7 162.49 59.67 REMARK 500 1 LYS A 31 -64.37 -131.43 REMARK 500 1 VAL A 32 -47.04 -152.90 REMARK 500 1 LYS A 49 21.96 -78.35 REMARK 500 2 LYS A 4 85.66 38.81 REMARK 500 2 LYS A 31 -67.46 -127.64 REMARK 500 2 VAL A 32 -47.20 -142.22 REMARK 500 4 LYS A 31 -70.25 -128.02 REMARK 500 4 VAL A 32 -52.99 -139.72 REMARK 500 4 ASP A 48 82.78 55.37 REMARK 500 5 LYS A 4 87.10 47.65 REMARK 500 5 LYS A 31 -72.61 -124.18 REMARK 500 5 VAL A 32 -44.54 -140.52 REMARK 500 6 LYS A 4 83.33 39.19 REMARK 500 6 LYS A 6 1.46 -68.62 REMARK 500 6 ARG A 7 172.11 61.72 REMARK 500 6 LYS A 31 -63.27 -127.90 REMARK 500 6 VAL A 32 -48.40 -145.18 REMARK 500 7 LYS A 4 142.24 68.54 REMARK 500 7 LYS A 31 -65.05 -135.86 REMARK 500 7 VAL A 32 -50.69 -147.49 REMARK 500 7 ASP A 48 79.10 55.63 REMARK 500 8 ASP A 3 -97.60 -131.50 REMARK 500 8 ARG A 7 160.98 60.46 REMARK 500 8 LYS A 31 -58.94 -129.96 REMARK 500 8 VAL A 32 -49.82 -144.21 REMARK 500 9 LYS A 4 91.92 58.22 REMARK 500 9 LYS A 6 2.84 -69.72 REMARK 500 9 ARG A 7 158.61 60.54 REMARK 500 9 LYS A 47 10.80 -68.12 REMARK 500 10 ASP A 3 -95.18 -136.19 REMARK 500 10 ARG A 7 159.19 60.77 REMARK 500 10 LYS A 31 -71.35 -121.67 REMARK 500 10 VAL A 32 -39.85 -148.48 REMARK 500 11 LYS A 31 -64.83 -132.66 REMARK 500 11 VAL A 32 -51.09 -145.09 REMARK 500 12 ASP A 3 -58.64 -134.67 REMARK 500 12 LYS A 4 73.46 45.38 REMARK 500 12 SER A 10 159.25 62.70 REMARK 500 12 LYS A 31 -69.27 -126.71 REMARK 500 12 VAL A 32 -56.11 -140.49 REMARK 500 12 LYS A 49 24.80 -75.71 REMARK 500 13 LYS A 31 -66.02 -128.33 REMARK 500 13 VAL A 32 -51.84 -141.50 REMARK 500 13 LYS A 49 33.54 -95.32 REMARK 500 14 LYS A 6 90.05 -68.30 REMARK 500 14 ARG A 7 153.63 -47.22 REMARK 500 14 LYS A 31 -76.36 -129.84 REMARK 500 14 VAL A 32 -42.81 -141.93 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 DA B 11 0.11 SIDE CHAIN REMARK 500 1 DC C 19 0.07 SIDE CHAIN REMARK 500 1 DT C 24 0.06 SIDE CHAIN REMARK 500 2 DA B 11 0.12 SIDE CHAIN REMARK 500 2 DT C 18 0.06 SIDE CHAIN REMARK 500 2 DT C 22 0.07 SIDE CHAIN REMARK 500 3 TYR A 63 0.09 SIDE CHAIN REMARK 500 3 DG B 10 0.08 SIDE CHAIN REMARK 500 3 DA B 11 0.11 SIDE CHAIN REMARK 500 4 DA B 11 0.10 SIDE CHAIN REMARK 500 4 DG B 12 0.06 SIDE CHAIN REMARK 500 5 TYR A 63 0.07 SIDE CHAIN REMARK 500 5 DA B 11 0.11 SIDE CHAIN REMARK 500 5 DA C 20 0.07 SIDE CHAIN REMARK 500 6 DA B 11 0.09 SIDE CHAIN REMARK 500 6 DC C 19 0.07 SIDE CHAIN REMARK 500 7 DA B 8 0.06 SIDE CHAIN REMARK 500 7 DA B 11 0.09 SIDE CHAIN REMARK 500 7 DA C 20 0.06 SIDE CHAIN REMARK 500 8 DA B 11 0.10 SIDE CHAIN REMARK 500 8 DC C 19 0.06 SIDE CHAIN REMARK 500 9 DA B 11 0.11 SIDE CHAIN REMARK 500 9 DC C 19 0.07 SIDE CHAIN REMARK 500 9 DA C 20 0.08 SIDE CHAIN REMARK 500 9 DT C 24 0.06 SIDE CHAIN REMARK 500 10 DA B 11 0.11 SIDE CHAIN REMARK 500 10 DC C 19 0.08 SIDE CHAIN REMARK 500 10 DA C 20 0.07 SIDE CHAIN REMARK 500 11 DA B 11 0.09 SIDE CHAIN REMARK 500 12 DG B 10 0.05 SIDE CHAIN REMARK 500 12 DA B 11 0.11 SIDE CHAIN REMARK 500 12 DC B 13 0.07 SIDE CHAIN REMARK 500 13 DA B 11 0.12 SIDE CHAIN REMARK 500 13 DC C 19 0.07 SIDE CHAIN REMARK 500 14 DG B 10 0.08 SIDE CHAIN REMARK 500 14 DA B 11 0.09 SIDE CHAIN REMARK 500 14 DG C 15 0.05 SIDE CHAIN REMARK 500 15 DA B 11 0.09 SIDE CHAIN REMARK 500 16 TYR A 63 0.07 SIDE CHAIN REMARK 500 16 DG B 10 0.08 SIDE CHAIN REMARK 500 16 DA B 11 0.10 SIDE CHAIN REMARK 500 16 DC C 19 0.07 SIDE CHAIN REMARK 500 17 TYR A 63 0.09 SIDE CHAIN REMARK 500 17 DA B 8 0.06 SIDE CHAIN REMARK 500 17 DA B 11 0.09 SIDE CHAIN REMARK 500 17 DA C 20 0.06 SIDE CHAIN REMARK 500 18 DA B 11 0.09 SIDE CHAIN REMARK 500 19 DG B 10 0.07 SIDE CHAIN REMARK 500 19 DA B 11 0.10 SIDE CHAIN REMARK 500 20 TYR A 63 0.09 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 52 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34874 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE AND CHEMICAL SHIFT ASSIGNMENTS FOR HMG-D Y12F REMARK 900 MUTANT COMPLEXED TO A 14:12 DA2 BULGE DNA REMARK 900 RELATED ID: 52208 RELATED DB: BMRB REMARK 900 PARTIAL CHEMICAL SHIFT LIST (BACKBONE ATOMS ONLY) FOR THE REMARK 900 CORRESPONDING FREE PROTEIN (HMG-D Y12F) DBREF 8R1X A 1 112 UNP Q05783 HMGD_DROME 1 112 DBREF 8R1X B 1 14 PDB 8R1X 8R1X 1 14 DBREF 8R1X C 15 26 PDB 8R1X 8R1X 15 26 SEQADV 8R1X PHE A 12 UNP Q05783 TYR 12 ENGINEERED MUTATION SEQRES 1 A 112 MET SER ASP LYS PRO LYS ARG PRO LEU SER ALA PHE MET SEQRES 2 A 112 LEU TRP LEU ASN SER ALA ARG GLU SER ILE LYS ARG GLU SEQRES 3 A 112 ASN PRO GLY ILE LYS VAL THR GLU VAL ALA LYS ARG GLY SEQRES 4 A 112 GLY GLU LEU TRP ARG ALA MET LYS ASP LYS SER GLU TRP SEQRES 5 A 112 GLU ALA LYS ALA ALA LYS ALA LYS ASP ASP TYR ASP ARG SEQRES 6 A 112 ALA VAL LYS GLU PHE GLU ALA ASN GLY GLY SER SER ALA SEQRES 7 A 112 ALA ASN GLY GLY GLY ALA LYS LYS ARG ALA LYS PRO ALA SEQRES 8 A 112 LYS LYS VAL ALA LYS LYS SER LYS LYS GLU GLU SER ASP SEQRES 9 A 112 GLU ASP ASP ASP ASP GLU SER GLU SEQRES 1 B 14 DC DG DA DT DA DT DT DA DA DG DA DG DC SEQRES 2 B 14 DC SEQRES 1 C 12 DG DG DC DT DC DA DA DT DA DT DC DG HELIX 1 AA1 SER A 10 ASN A 27 1 18 HELIX 2 AA2 VAL A 32 ALA A 45 1 14 HELIX 3 AA3 LYS A 49 ASN A 73 1 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1