HEADER BIOSYNTHETIC PROTEIN 06-NOV-23 8R2J TITLE X-RAY CRYSTALLOGRAPHIC STRUCTURE OF SWAQ2 IN COMPLEX WITH NADP+ AND TITLE 2 DOXORUBICIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NMRA FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE N-TERMINAL HIS6-TAG USED FOR PURIFICATION WAS COMPND 6 REMOVED, THE FIRST RESIDUE, SER1, IS A REMNANT OF THE EXPRESSION TAG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SWARTBERGENSIS; SOURCE 3 ORGANISM_TAXID: 487165; SOURCE 4 GENE: CA983_01310; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS POLYKETIDE, ANTIBIOTIC, BIOSYNTHESIS, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.SCHNELL,G.SCHNEIDER REVDAT 1 07-AUG-24 8R2J 0 JRNL AUTH B.N.WANDI,P.DINIS,V.SIITONEN,G.SCHNEIDER,R.SCHNELL, JRNL AUTH 2 M.METSA-KETELE JRNL TITL MECHANISM OF TWO-COMPONENT MONO-OXYGENASES INVOLVED IN JRNL TITL 2 ANTHRACYCLINE 1-HYDROXYLATION JRNL REF ACS CATALYSIS 2024 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.4C02623 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 26051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1444 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1920 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4182 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 252 REMARK 3 SOLVENT ATOMS : 281 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -2.58000 REMARK 3 B12 (A**2) : 0.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.333 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.217 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.709 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4603 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4186 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6326 ; 1.814 ; 1.688 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9635 ; 1.382 ; 1.589 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 558 ; 6.853 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 261 ;34.080 ;20.345 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 664 ;14.529 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;19.752 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 591 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5214 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1022 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2206 ; 1.339 ; 2.254 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2205 ; 1.338 ; 2.253 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2754 ; 2.335 ; 3.367 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2755 ; 2.335 ; 3.368 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2397 ; 1.789 ; 2.658 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2398 ; 1.789 ; 2.658 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3566 ; 3.033 ; 3.917 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 19200 ; 6.342 ;44.379 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 18998 ; 6.287 ;44.108 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 410 REMARK 3 ORIGIN FOR THE GROUP (A): -24.8860 3.2900 -8.8460 REMARK 3 T TENSOR REMARK 3 T11: 0.1796 T22: 0.2218 REMARK 3 T33: 0.0427 T12: 0.0709 REMARK 3 T13: -0.0356 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 1.3771 L22: 1.2248 REMARK 3 L33: 2.0192 L12: 0.3064 REMARK 3 L13: -0.2072 L23: -0.2628 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: 0.1044 S13: 0.0590 REMARK 3 S21: -0.0887 S22: -0.0522 S23: 0.2093 REMARK 3 S31: -0.1338 S32: -0.4876 S33: 0.0201 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 410 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1870 -23.8200 -6.7740 REMARK 3 T TENSOR REMARK 3 T11: 0.2060 T22: 0.1919 REMARK 3 T33: 0.0248 T12: 0.0960 REMARK 3 T13: 0.0125 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 0.9058 L22: 1.4715 REMARK 3 L33: 1.9987 L12: -0.0621 REMARK 3 L13: 0.0161 L23: 0.1755 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: -0.0496 S13: -0.1336 REMARK 3 S21: 0.1047 S22: -0.0196 S23: -0.0195 REMARK 3 S31: 0.4410 S32: 0.2585 S33: 0.0354 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8R2J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1292134492. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.67 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976254 REMARK 200 MONOCHROMATOR : 0.976254 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27570 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 29.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.17300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.77400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NACACODYLATE PH6.67, 1M NA3 REMARK 280 -CITRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.25467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.12733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.19100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.06367 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 145.31833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 243 REMARK 465 ASN A 244 REMARK 465 GLU A 245 REMARK 465 SER A 246 REMARK 465 ASP A 247 REMARK 465 PRO A 248 REMARK 465 SER A 249 REMARK 465 ALA A 250 REMARK 465 GLU A 251 REMARK 465 ALA A 252 REMARK 465 GLU A 253 REMARK 465 ALA A 254 REMARK 465 GLU A 255 REMARK 465 ALA A 256 REMARK 465 PHE A 257 REMARK 465 ASP A 258 REMARK 465 LEU A 259 REMARK 465 SER A 260 REMARK 465 ASN B 244 REMARK 465 GLU B 245 REMARK 465 SER B 246 REMARK 465 ASP B 247 REMARK 465 PRO B 248 REMARK 465 SER B 249 REMARK 465 ALA B 250 REMARK 465 GLU B 251 REMARK 465 ALA B 252 REMARK 465 GLU B 253 REMARK 465 ALA B 254 REMARK 465 GLU B 255 REMARK 465 ALA B 256 REMARK 465 PHE B 257 REMARK 465 ASP B 258 REMARK 465 LEU B 259 REMARK 465 SER B 260 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG B 23 OD1 ASP B 105 6554 2.00 REMARK 500 NH1 ARG A 218 O ALA B 223 6454 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 94 -140.84 -110.41 REMARK 500 PHE A 106 -64.81 -123.76 REMARK 500 ARG A 125 78.06 -111.45 REMARK 500 TRP A 156 -150.09 -144.54 REMARK 500 PHE A 157 67.40 -116.55 REMARK 500 SER B 94 -139.82 -113.40 REMARK 500 PHE B 106 -61.64 -122.91 REMARK 500 ARG B 125 79.15 -111.24 REMARK 500 GLU B 144 14.34 -143.48 REMARK 500 TRP B 156 -150.20 -142.35 REMARK 500 PHE B 157 66.70 -115.70 REMARK 500 REMARK 500 REMARK: NULL DBREF 8R2J A 1 292 PDB 8R2J 8R2J 1 292 DBREF 8R2J B 1 292 PDB 8R2J 8R2J 1 292 SEQRES 1 A 292 SER THR ILE LEU VAL THR GLY ALA THR GLY ASN VAL GLY SEQRES 2 A 292 ARG ASN VAL VAL ARG GLN LEU ALA GLU ARG GLY HIS ASP SEQRES 3 A 292 VAL ARG ALA LEU THR ARG ARG ALA ARG PRO GLY ALA ALA SEQRES 4 A 292 PRO GLU GLY VAL ARG VAL GLN GLU GLY ASP LEU THR HIS SEQRES 5 A 292 PRO LYS THR LEU LYS ASP ALA LEU GLU GLY VAL ASP ALA SEQRES 6 A 292 LEU PHE LEU PHE PRO VAL ALA ALA THR ALA GLU GLU VAL SEQRES 7 A 292 VAL GLY MET ALA LYS SER ALA GLY VAL ARG ARG ILE VAL SEQRES 8 A 292 VAL LEU SER SER GLY ALA VAL THR ALA GLY TYR ASP THR SEQRES 9 A 292 ASP PHE HIS LEU PRO VAL GLU ARG ALA VAL GLU ALA SER SEQRES 10 A 292 GLY LEU GLU TRP THR HIS VAL ARG PRO GLY GLU PHE ALA SEQRES 11 A 292 MET ASN LYS LEU ALA LEU TRP GLY PRO PRO ILE ARG ALA SEQRES 12 A 292 GLU ARG VAL VAL ARG GLU PRO ALA PRO ASP ALA GLY TRP SEQRES 13 A 292 PHE PRO VAL HIS GLU GLN ASP ILE ALA ASP VAL ALA VAL SEQRES 14 A 292 LEU ALA LEU THR GLU GLU GLY HIS ALA GLY GLN ALA TYR SEQRES 15 A 292 THR LEU ASN GLY PRO GLU LEU LEU THR HIS ARG ARG GLN SEQRES 16 A 292 VAL GLU LEU ILE ALA ASP ALA MET GLY GLU GLU ILE ARG SEQRES 17 A 292 LEU GLU VAL VAL THR PRO GLN GLN ALA ARG GLU ILE TYR SEQRES 18 A 292 LEU ALA GLN GLY GLY PHE ALA ALA GLU ASN VAL ASP PHE SEQRES 19 A 292 LEU LEU GLY PHE GLU ASP TYR GLY GLY ASN GLU SER ASP SEQRES 20 A 292 PRO SER ALA GLU ALA GLU ALA GLU ALA PHE ASP LEU SER SEQRES 21 A 292 SER LEU GLY PRO MET PRO THR ALA GLU ALA VAL THR GLY SEQRES 22 A 292 ARG PRO ALA ARG THR PHE ALA GLN TRP ALA ARG ASP HIS SEQRES 23 A 292 ALA ASP GLU PHE ARG ALA SEQRES 1 B 292 SER THR ILE LEU VAL THR GLY ALA THR GLY ASN VAL GLY SEQRES 2 B 292 ARG ASN VAL VAL ARG GLN LEU ALA GLU ARG GLY HIS ASP SEQRES 3 B 292 VAL ARG ALA LEU THR ARG ARG ALA ARG PRO GLY ALA ALA SEQRES 4 B 292 PRO GLU GLY VAL ARG VAL GLN GLU GLY ASP LEU THR HIS SEQRES 5 B 292 PRO LYS THR LEU LYS ASP ALA LEU GLU GLY VAL ASP ALA SEQRES 6 B 292 LEU PHE LEU PHE PRO VAL ALA ALA THR ALA GLU GLU VAL SEQRES 7 B 292 VAL GLY MET ALA LYS SER ALA GLY VAL ARG ARG ILE VAL SEQRES 8 B 292 VAL LEU SER SER GLY ALA VAL THR ALA GLY TYR ASP THR SEQRES 9 B 292 ASP PHE HIS LEU PRO VAL GLU ARG ALA VAL GLU ALA SER SEQRES 10 B 292 GLY LEU GLU TRP THR HIS VAL ARG PRO GLY GLU PHE ALA SEQRES 11 B 292 MET ASN LYS LEU ALA LEU TRP GLY PRO PRO ILE ARG ALA SEQRES 12 B 292 GLU ARG VAL VAL ARG GLU PRO ALA PRO ASP ALA GLY TRP SEQRES 13 B 292 PHE PRO VAL HIS GLU GLN ASP ILE ALA ASP VAL ALA VAL SEQRES 14 B 292 LEU ALA LEU THR GLU GLU GLY HIS ALA GLY GLN ALA TYR SEQRES 15 B 292 THR LEU ASN GLY PRO GLU LEU LEU THR HIS ARG ARG GLN SEQRES 16 B 292 VAL GLU LEU ILE ALA ASP ALA MET GLY GLU GLU ILE ARG SEQRES 17 B 292 LEU GLU VAL VAL THR PRO GLN GLN ALA ARG GLU ILE TYR SEQRES 18 B 292 LEU ALA GLN GLY GLY PHE ALA ALA GLU ASN VAL ASP PHE SEQRES 19 B 292 LEU LEU GLY PHE GLU ASP TYR GLY GLY ASN GLU SER ASP SEQRES 20 B 292 PRO SER ALA GLU ALA GLU ALA GLU ALA PHE ASP LEU SER SEQRES 21 B 292 SER LEU GLY PRO MET PRO THR ALA GLU ALA VAL THR GLY SEQRES 22 B 292 ARG PRO ALA ARG THR PHE ALA GLN TRP ALA ARG ASP HIS SEQRES 23 B 292 ALA ASP GLU PHE ARG ALA HET DM2 A 301 39 HET DM2 A 302 39 HET NAP A 303 48 HET DM2 B 301 39 HET DM2 B 302 39 HET NAP B 303 48 HETNAM DM2 DOXORUBICIN HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN DM2 ADRIAMYCIN HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 DM2 4(C27 H29 N O11) FORMUL 5 NAP 2(C21 H28 N7 O17 P3) FORMUL 9 HOH *281(H2 O) HELIX 1 AA1 VAL A 12 ARG A 23 1 12 HELIX 2 AA2 HIS A 52 LYS A 57 5 6 HELIX 3 AA3 THR A 74 GLY A 86 1 13 HELIX 4 AA4 SER A 95 ALA A 100 1 6 HELIX 5 AA5 PHE A 106 SER A 117 1 12 HELIX 6 AA6 ALA A 130 ARG A 145 1 16 HELIX 7 AA7 HIS A 160 GLU A 174 1 15 HELIX 8 AA8 HIS A 192 GLY A 204 1 13 HELIX 9 AA9 THR A 213 GLY A 225 1 13 HELIX 10 AB1 GLY A 225 ASN A 231 1 7 HELIX 11 AB2 ASN A 231 LEU A 236 1 6 HELIX 12 AB3 ALA A 268 GLY A 273 1 6 HELIX 13 AB4 THR A 278 ALA A 287 1 10 HELIX 14 AB5 ASP A 288 ARG A 291 5 4 HELIX 15 AB6 GLY B 10 ARG B 23 1 14 HELIX 16 AB7 HIS B 52 THR B 55 5 4 HELIX 17 AB8 LEU B 56 GLU B 61 1 6 HELIX 18 AB9 THR B 74 GLY B 86 1 13 HELIX 19 AC1 SER B 95 ALA B 100 1 6 HELIX 20 AC2 PHE B 106 SER B 117 1 12 HELIX 21 AC3 ALA B 130 ARG B 145 1 16 HELIX 22 AC4 HIS B 160 GLU B 174 1 15 HELIX 23 AC5 HIS B 192 GLY B 204 1 13 HELIX 24 AC6 THR B 213 GLY B 225 1 13 HELIX 25 AC7 GLY B 225 ASN B 231 1 7 HELIX 26 AC8 ASN B 231 LEU B 236 1 6 HELIX 27 AC9 ALA B 268 GLY B 273 1 6 HELIX 28 AD1 THR B 278 HIS B 286 1 9 HELIX 29 AD2 ALA B 287 ARG B 291 5 5 SHEET 1 AA1 7 ARG A 44 GLU A 47 0 SHEET 2 AA1 7 ASP A 26 THR A 31 1 N ALA A 29 O GLN A 46 SHEET 3 AA1 7 THR A 2 VAL A 5 1 N ILE A 3 O ARG A 28 SHEET 4 AA1 7 ALA A 65 LEU A 68 1 O PHE A 67 N LEU A 4 SHEET 5 AA1 7 ARG A 89 LEU A 93 1 O VAL A 91 N LEU A 66 SHEET 6 AA1 7 GLU A 120 PRO A 126 1 O VAL A 124 N VAL A 92 SHEET 7 AA1 7 GLN A 180 LEU A 184 1 O TYR A 182 N HIS A 123 SHEET 1 AA2 2 VAL A 146 GLU A 149 0 SHEET 2 AA2 2 ARG A 208 VAL A 211 1 O GLU A 210 N VAL A 147 SHEET 1 AA3 2 GLY A 155 TRP A 156 0 SHEET 2 AA3 2 LEU A 190 THR A 191 -1 O LEU A 190 N TRP A 156 SHEET 1 AA4 7 ARG B 44 GLU B 47 0 SHEET 2 AA4 7 ASP B 26 THR B 31 1 N ALA B 29 O GLN B 46 SHEET 3 AA4 7 THR B 2 VAL B 5 1 N VAL B 5 O ARG B 28 SHEET 4 AA4 7 ALA B 65 LEU B 68 1 O PHE B 67 N LEU B 4 SHEET 5 AA4 7 ARG B 89 LEU B 93 1 O VAL B 91 N LEU B 66 SHEET 6 AA4 7 GLU B 120 PRO B 126 1 O VAL B 124 N VAL B 92 SHEET 7 AA4 7 GLN B 180 LEU B 184 1 O TYR B 182 N ARG B 125 SHEET 1 AA5 2 VAL B 146 GLU B 149 0 SHEET 2 AA5 2 ARG B 208 VAL B 211 1 O GLU B 210 N VAL B 147 SHEET 1 AA6 2 GLY B 155 TRP B 156 0 SHEET 2 AA6 2 LEU B 190 THR B 191 -1 O LEU B 190 N TRP B 156 CRYST1 87.313 87.313 174.382 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011453 0.006612 0.000000 0.00000 SCALE2 0.000000 0.013225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005735 0.00000