HEADER IMMUNE SYSTEM 08-NOV-23 8R38
TITLE BIIG2 ANTI-INTEGRIN FAB
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BIIG2 FAB, HEAVY CHAIN;
COMPND 3 CHAIN: H;
COMPND 4 ENGINEERED: YES;
COMPND 5 OTHER_DETAILS: N-TERMINAL GLUTAMINE MODIFIED TO A PYROGLUTAMATE
COMPND 6 PROLINE 100C (KABAT NUMBERING) MODIFIED TO 5-HYDROXYPROLINE;
COMPND 7 MOL_ID: 2;
COMPND 8 MOLECULE: BIIG2 FAB, LIGHT CHAIN;
COMPND 9 CHAIN: L;
COMPND 10 ENGINEERED: YES;
COMPND 11 OTHER_DETAILS: LYSINE 199 MODIFIED TO METHYLLYSINE
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS;
SOURCE 3 ORGANISM_TAXID: 10116;
SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606;
SOURCE 6 MOL_ID: 2;
SOURCE 7 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS;
SOURCE 8 ORGANISM_TAXID: 10116;
SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS;
SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606
KEYWDS BIIG2 FAB, ANTI-INTEGRIN, GLYCOSYLATED, IMMUNE SYSTEM
EXPDTA X-RAY DIFFRACTION
AUTHOR G.CORDARA,J.B.HEIM,H.JOHANNESEN,U.KRENGEL
REVDAT 2 05-FEB-25 8R38 1 JRNL
REVDAT 1 25-SEP-24 8R38 0
JRNL AUTH A.NGUYEN,J.B.HEIM,G.CORDARA,M.C.CHAN,H.JOHANNESEN,
JRNL AUTH 2 C.CHARLESWORTH,M.LI,C.M.AZUMAYA,B.MADDEN,U.KRENGEL,A.MEVES,
JRNL AUTH 3 M.G.CAMPBELL
JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF INTEGRIN ALPHA
JRNL TITL 2 5-TARGETING ANTIBODIES FOR ANTI-ANGIOGENIC THERAPY.
JRNL REF BIORXIV 2025
JRNL REFN ISSN 2692-8205
JRNL PMID 39829743
JRNL DOI 10.1101/2025.01.08.631572
REMARK 2
REMARK 2 RESOLUTION. 1.38 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0415
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.38
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3
REMARK 3 NUMBER OF REFLECTIONS : 86974
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.197
REMARK 3 R VALUE (WORKING SET) : 0.195
REMARK 3 FREE R VALUE : 0.217
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 4717
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.38
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.42
REMARK 3 REFLECTION IN BIN (WORKING SET) : 5948
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.26
REMARK 3 BIN R VALUE (WORKING SET) : 0.3680
REMARK 3 BIN FREE R VALUE SET COUNT : 345
REMARK 3 BIN FREE R VALUE : 0.3870
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3285
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 81
REMARK 3 SOLVENT ATOMS : 224
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 21.30
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.18
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.23000
REMARK 3 B22 (A**2) : 0.11000
REMARK 3 B33 (A**2) : 0.11000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.067
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.361
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4079 ; 0.009 ; 0.012
REMARK 3 BOND LENGTHS OTHERS (A): 3712 ; 0.001 ; 0.016
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5595 ; 1.703 ; 1.668
REMARK 3 BOND ANGLES OTHERS (DEGREES): 8670 ; 0.619 ; 1.577
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 542 ; 7.686 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 21 ;10.166 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 675 ;15.089 ;10.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 640 ; 0.080 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4900 ; 0.010 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 892 ; 0.003 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2070 ; 2.297 ; 2.413
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2069 ; 2.294 ; 2.413
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2644 ; 3.305 ; 4.337
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2645 ; 3.305 ; 4.338
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2009 ; 2.888 ; 2.654
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2010 ; 2.887 ; 2.654
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2952 ; 4.211 ; 4.758
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4158 ; 5.584 ;26.210
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4131 ; 5.564 ;26.100
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 8R38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-NOV-23.
REMARK 100 THE DEPOSITION ID IS D_1292134545.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 28-SEP-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : MAX IV
REMARK 200 BEAMLINE : BIOMAX
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372
REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL
REMARK 200 OPTICS : KIRKPATRICK-BAEZ (KB) MIRROR
REMARK 200 PAIR (VFM, HFM)
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 2.2.11-GAD03A188B
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.9
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 169111
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400
REMARK 200 RESOLUTION RANGE LOW (A) : 43.700
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6
REMARK 200 DATA REDUNDANCY : 6.600
REMARK 200 R MERGE (I) : 0.09600
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43
REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4
REMARK 200 DATA REDUNDANCY IN SHELL : 4.50
REMARK 200 R MERGE FOR SHELL (I) : 2.87500
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.230
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER 2.8.3
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: PRISM
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 48.80
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION SOLUTION: OF 20% W/V
REMARK 280 PEG 3350, 0.2 M SODIUM CHLORIDE, 2.5% V/V DMSO PROTEIN BUFFER
REMARK 280 SOLUTION: 25 MM BIS-TRIS-HCL, APPROX. 130 MM NACL AT PH 6.5,
REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.46500
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.73450
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.44100
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.73450
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.46500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.44100
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, S
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ARG H 211
REMARK 465 ASN H 212
REMARK 465 GLY H 213
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 GLN H 13 CB - CA - C ANGL. DEV. = 12.9 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER H 15 -4.12 86.46
REMARK 500 LYS H 43 -167.51 -124.27
REMARK 500 ASN H 82A -169.36 -114.32
REMARK 500 SER H 82B 56.56 79.00
REMARK 500 LEU H 82C 69.98 -63.02
REMARK 500 SER H 84 128.60 -33.67
REMARK 500 MET H 98 -102.09 -116.46
REMARK 500 SER H 160 34.18 -140.16
REMARK 500 SER L 30 -135.40 49.83
REMARK 500 LEU L 47 -60.71 -96.90
REMARK 500 PRO L 120 150.92 -47.15
REMARK 500 GLU L 213 -80.73 -72.40
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 GLY H 42 LYS H 43 -143.53
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG H 66 0.12 SIDE CHAIN
REMARK 500 ARG L 28 0.08 SIDE CHAIN
REMARK 500 ARG L 142 0.08 SIDE CHAIN
REMARK 500 ARG L 211 0.09 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
DBREF 8R38 H 1 213 PDB 8R38 8R38 1 213
DBREF 8R38 L 1 214 PDB 8R38 8R38 1 214
SEQRES 1 H 220 PCA VAL GLN LEU MET GLU SER GLY PRO GLY LEU VAL GLN
SEQRES 2 H 220 PRO SER GLU THR LEU SER LEU THR CYS THR VAL SER GLY
SEQRES 3 H 220 PHE SER LEU THR SER TYR ASN VAL HIS TRP VAL ARG GLN
SEQRES 4 H 220 PRO PRO GLY LYS GLY LEU GLU TRP MET GLY VAL MET TRP
SEQRES 5 H 220 SER GLY GLY SER THR ASP TYR ASN SER THR LEU LYS SER
SEQRES 6 H 220 ARG LEU SER ILE SER ARG ASP THR SER GLN ASN GLN VAL
SEQRES 7 H 220 PHE LEU LYS MET ASN SER LEU GLN SER GLU ASP THR THR
SEQRES 8 H 220 THR TYR TYR CYS ALA ARG ASP ARG THR MET GLY MET THR
SEQRES 9 H 220 THR XRE PHE ASP TYR TRP GLY GLN GLY VAL MET VAL THR
SEQRES 10 H 220 VAL SER SER ALA GLN THR THR ALA PRO SER VAL TYR PRO
SEQRES 11 H 220 LEU ALA PRO GLY CYS GLY ASP THR THR SER SER THR VAL
SEQRES 12 H 220 THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO
SEQRES 13 H 220 VAL THR VAL THR TRP ASN SER GLY ALA LEU SER SER ASP
SEQRES 14 H 220 VAL HIS THR PHE PRO ALA VAL LEU GLN SER GLY LEU TYR
SEQRES 15 H 220 THR LEU THR SER SER VAL THR SER SER THR TRP PRO SER
SEQRES 16 H 220 GLN THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER
SEQRES 17 H 220 THR LYS VAL ASP LYS LYS VAL GLU ARG ARG ASN GLY
SEQRES 1 L 214 ASP VAL GLN MET THR GLN SER PRO SER ASN LEU ALA ALA
SEQRES 2 L 214 SER PRO GLY GLU SER VAL SER ILE ASN CYS LYS ALA SER
SEQRES 3 L 214 LYS ARG ILE SER LYS TYR LEU ALA TRP TYR GLN GLN LYS
SEQRES 4 L 214 PRO GLY LYS ALA ASN LYS LEU LEU ILE TYR SER GLY SER
SEQRES 5 L 214 THR LEU GLN SER GLY THR PRO SER ARG PHE SER GLY SER
SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE ARG ASN LEU
SEQRES 7 L 214 GLU PRO GLU ASP PHE GLY LEU TYR TYR CYS GLN GLN HIS
SEQRES 8 L 214 LYS GLU TYR PRO PRO THR PHE GLY ALA GLY THR LYS LEU
SEQRES 9 L 214 GLU LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE
SEQRES 10 L 214 PHE PRO PRO SER THR GLU GLN LEU ALA THR GLY GLY ALA
SEQRES 11 L 214 SER VAL VAL CYS LEU MET ASN ASN PHE TYR PRO ARG ASP
SEQRES 12 L 214 ILE SER VAL LYS TRP LYS ILE ASP GLY THR GLU ARG ARG
SEQRES 13 L 214 ASP GLY VAL LEU ASP SER VAL THR ASP GLN ASP SER LYS
SEQRES 14 L 214 ASP SER THR TYR SER MET SER SER THR LEU SER LEU THR
SEQRES 15 L 214 LYS ALA ASP TYR GLU SER HIS ASN LEU TYR THR CYS GLU
SEQRES 16 L 214 VAL VAL HIS MLZ THR SER SER SER PRO VAL VAL LYS SER
SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS
HET PCA H 1 8
HET XRE H 100C 8
HET MLZ L 199 10
HET NAG S 1 14
HET NAG S 2 14
HET BMA S 3 11
HET MAN S 4 11
HET GOL H 301 6
HET GOL L 301 6
HET GOL L 302 6
HET GOL L 303 6
HET GOL L 304 6
HET CL L 305 1
HETNAM PCA PYROGLUTAMIC ACID
HETNAM XRE 5-HYDROXYPROLINE
HETNAM MLZ N-METHYL-LYSINE
HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
HETNAM BMA BETA-D-MANNOPYRANOSE
HETNAM MAN ALPHA-D-MANNOPYRANOSE
HETNAM GOL GLYCEROL
HETNAM CL CHLORIDE ION
HETSYN XRE (2~{S},5~{S})-5-OXIDANYLPYRROLIDINE-2-CARBOXYLIC ACID
HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-
HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-
HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE
HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE
HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 1 PCA C5 H7 N O3
FORMUL 1 XRE C5 H9 N O3
FORMUL 2 MLZ C7 H16 N2 O2
FORMUL 3 NAG 2(C8 H15 N O6)
FORMUL 3 BMA C6 H12 O6
FORMUL 3 MAN C6 H12 O6
FORMUL 4 GOL 5(C3 H8 O3)
FORMUL 9 CL CL 1-
FORMUL 10 HOH *224(H2 O)
HELIX 1 AA1 LEU H 63 SER H 65 5 3
HELIX 2 AA2 THR H 73 GLN H 75 5 3
HELIX 3 AA3 SER H 156 ALA H 158 5 3
HELIX 4 AA4 PRO H 198 SER H 201 5 4
HELIX 5 AA5 GLU L 79 PHE L 83 5 5
HELIX 6 AA6 SER L 121 ALA L 126 1 6
HELIX 7 AA7 LYS L 183 SER L 188 1 6
HELIX 8 AA8 ASN L 212 CYS L 214 5 3
SHEET 1 AA1 4 GLN H 3 SER H 7 0
SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3
SHEET 3 AA1 4 GLN H 77 MET H 82 -1 O MET H 82 N LEU H 18
SHEET 4 AA1 4 LEU H 67 ASP H 72 -1 N SER H 70 O PHE H 79
SHEET 1 AA2 2 LEU H 11 VAL H 12 0
SHEET 2 AA2 2 THR H 110 VAL H 111 1 O THR H 110 N VAL H 12
SHEET 1 AA3 5 THR H 57 TYR H 59 0
SHEET 2 AA3 5 GLU H 46 MET H 51 -1 N VAL H 50 O ASP H 58
SHEET 3 AA3 5 ASN H 33 GLN H 39 -1 N VAL H 34 O MET H 51
SHEET 4 AA3 5 THR H 89 ASP H 95 -1 O ALA H 93 N HIS H 35
SHEET 5 AA3 5 TYR H 102 TRP H 103 -1 O TYR H 102 N ARG H 94
SHEET 1 AA4 5 THR H 57 TYR H 59 0
SHEET 2 AA4 5 GLU H 46 MET H 51 -1 N VAL H 50 O ASP H 58
SHEET 3 AA4 5 ASN H 33 GLN H 39 -1 N VAL H 34 O MET H 51
SHEET 4 AA4 5 THR H 89 ASP H 95 -1 O ALA H 93 N HIS H 35
SHEET 5 AA4 5 VAL H 107 MET H 108 -1 O VAL H 107 N TYR H 90
SHEET 1 AA5 4 SER H 120 LEU H 124 0
SHEET 2 AA5 4 VAL H 136 TYR H 145 -1 O LYS H 143 N SER H 120
SHEET 3 AA5 4 LEU H 174 SER H 183 -1 O TYR H 175 N TYR H 145
SHEET 4 AA5 4 HIS H 164 THR H 165 -1 N HIS H 164 O SER H 180
SHEET 1 AA6 4 SER H 120 LEU H 124 0
SHEET 2 AA6 4 VAL H 136 TYR H 145 -1 O LYS H 143 N SER H 120
SHEET 3 AA6 4 LEU H 174 SER H 183 -1 O TYR H 175 N TYR H 145
SHEET 4 AA6 4 VAL H 169 GLN H 171 -1 N GLN H 171 O LEU H 174
SHEET 1 AA7 3 THR H 151 TRP H 154 0
SHEET 2 AA7 3 VAL H 191 HIS H 197 -1 O ASN H 194 N THR H 153
SHEET 3 AA7 3 THR H 202 VAL H 208 -1 O VAL H 208 N VAL H 191
SHEET 1 AA8 4 MET L 4 SER L 7 0
SHEET 2 AA8 4 VAL L 19 ALA L 25 -1 O ASN L 22 N SER L 7
SHEET 3 AA8 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23
SHEET 4 AA8 4 PHE L 62 GLY L 66 -1 N SER L 63 O THR L 74
SHEET 1 AA9 6 ASN L 10 ALA L 13 0
SHEET 2 AA9 6 THR L 102 LEU L 106 1 O GLU L 105 N LEU L 11
SHEET 3 AA9 6 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104
SHEET 4 AA9 6 LEU L 33 GLN L 38 -1 N GLN L 38 O LEU L 85
SHEET 5 AA9 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35
SHEET 6 AA9 6 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49
SHEET 1 AB1 4 ASN L 10 ALA L 13 0
SHEET 2 AB1 4 THR L 102 LEU L 106 1 O GLU L 105 N LEU L 11
SHEET 3 AB1 4 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104
SHEET 4 AB1 4 THR L 97A PHE L 98 -1 O THR L 97A N GLN L 90
SHEET 1 AB2 4 THR L 114 PHE L 118 0
SHEET 2 AB2 4 GLY L 129 PHE L 139 -1 O ASN L 137 N THR L 114
SHEET 3 AB2 4 TYR L 173 THR L 182 -1 O MET L 175 N MET L 136
SHEET 4 AB2 4 VAL L 159 VAL L 163 -1 N LEU L 160 O THR L 178
SHEET 1 AB3 4 THR L 153 ARG L 155 0
SHEET 2 AB3 4 SER L 145 ILE L 150 -1 N ILE L 150 O THR L 153
SHEET 3 AB3 4 LEU L 191 VAL L 197 -1 O VAL L 197 N SER L 145
SHEET 4 AB3 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196
SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.07
SSBOND 2 CYS H 128 CYS L 214 1555 1555 1.99
SSBOND 3 CYS H 140 CYS H 193 1555 1555 2.09
SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.04
SSBOND 5 CYS L 134 CYS L 194 1555 1555 2.00
LINK C PCA H 1 N VAL H 2 1555 1555 1.39
LINK ND2 ASN H 60 C1 NAG S 1 1555 1555 1.47
LINK C THR H 100B N XRE H 100C 1555 1555 1.34
LINK C XRE H 100C N PHE H 100D 1555 1555 1.36
LINK C HIS L 198 N MLZ L 199 1555 1555 1.34
LINK C MLZ L 199 N THR L 200 1555 1555 1.34
LINK O4 NAG S 1 C1 NAG S 2 1555 1555 1.39
LINK O4 NAG S 2 C1 BMA S 3 1555 1555 1.39
LINK O6 BMA S 3 C1 MAN S 4 1555 1555 1.41
CISPEP 1 PHE H 146 PRO H 147 0 -6.51
CISPEP 2 GLU H 148 PRO H 149 0 -6.30
CISPEP 3 TRP H 186 PRO H 187 0 -3.48
CISPEP 4 SER L 7 PRO L 8 0 -9.78
CISPEP 5 TYR L 94 PRO L 96 0 1.20
CISPEP 6 TYR L 140 PRO L 141 0 1.34
CRYST1 62.930 80.882 87.469 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015891 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012364 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011433 0.00000
HETATM 1 N PCA H 1 -10.987 -8.678 3.742 1.00 25.28 N
HETATM 2 CA PCA H 1 -10.206 -9.765 3.214 1.00 23.49 C
HETATM 3 CB PCA H 1 -11.193 -10.486 2.287 1.00 23.94 C
HETATM 4 CG PCA H 1 -12.308 -9.497 2.054 1.00 22.82 C
HETATM 5 CD PCA H 1 -12.149 -8.461 3.127 1.00 21.40 C
HETATM 6 OE PCA H 1 -12.925 -7.528 3.387 1.00 21.29 O
HETATM 7 C PCA H 1 -8.996 -9.229 2.392 1.00 20.28 C
HETATM 8 O PCA H 1 -9.035 -8.088 1.958 1.00 20.49 O