HEADER TRANSFERASE 13-NOV-23 8R48 TITLE STRUCTURE OF PLASTIDIAL PHOSPHORYLASE PHO1 FROM SOLANUM TUBEROSUM AT TITLE 2 2.2 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-1,4 GLUCAN PHOSPHORYLASE L-1 ISOZYME, COMPND 3 CHLOROPLASTIC/AMYLOPLASTIC; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: STARCH PHOSPHORYLASE L-1; COMPND 6 EC: 2.4.1.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM TUBEROSUM; SOURCE 3 ORGANISM_COMMON: POTATO; SOURCE 4 ORGANISM_TAXID: 4113 KEYWDS GLYCOSYLTRANSFERASE, CARBOHYDRATE METABOLISM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.M.KOULAS,D.D.LEONIDAS REVDAT 2 23-OCT-24 8R48 1 JRNL REVDAT 1 09-OCT-24 8R48 0 JRNL AUTH S.M.KOULAS,E.KYRIAKIS,A.S.TSAGKARAKOU,D.D.LEONIDAS JRNL TITL KINETIC AND STRUCTURAL STUDIES OF THE PLASTIDIAL SOLANUM JRNL TITL 2 TUBEROSUM PHOSPHORYLASE. JRNL REF ACS OMEGA V. 9 41841 2024 JRNL REFN ESSN 2470-1343 JRNL PMID 39398113 JRNL DOI 10.1021/ACSOMEGA.4C06313 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 50984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2601 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3740 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6663 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.72000 REMARK 3 B22 (A**2) : -0.72000 REMARK 3 B33 (A**2) : 2.34000 REMARK 3 B12 (A**2) : -0.36000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.946 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6830 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9241 ; 1.918 ; 1.634 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 828 ; 7.012 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 369 ;35.504 ;22.927 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1182 ;17.712 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;20.619 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 874 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5230 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3318 ; 2.020 ; 2.897 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4144 ; 3.133 ; 4.335 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3512 ; 3.004 ; 3.160 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10397 ; 6.294 ;38.883 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 916 REMARK 3 ORIGIN FOR THE GROUP (A): 88.8560 42.8490 -14.6080 REMARK 3 T TENSOR REMARK 3 T11: 0.0966 T22: 0.0852 REMARK 3 T33: 0.1151 T12: -0.0487 REMARK 3 T13: -0.0300 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 1.0840 L22: 0.3077 REMARK 3 L33: 0.6092 L12: 0.1525 REMARK 3 L13: 0.0126 L23: -0.0010 REMARK 3 S TENSOR REMARK 3 S11: 0.0705 S12: -0.1816 S13: -0.2191 REMARK 3 S21: 0.1036 S22: -0.0320 S23: -0.0444 REMARK 3 S31: 0.1651 S32: -0.0204 S33: -0.0385 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 8R48 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1292134610. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976256 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53632 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 118.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.5, 20 % W/V PEG REMARK 280 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.56433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.12867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.12867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.56433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 190.66050 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 110.07789 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -79.12867 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 LEU A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 5 REMARK 465 ILE A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 PRO A 9 REMARK 465 ILE A 10 REMARK 465 THR A 11 REMARK 465 GLU A 12 REMARK 465 GLN A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 GLU A 16 REMARK 465 SER A 17 REMARK 465 ASP A 18 REMARK 465 LEU A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 PHE A 22 REMARK 465 LEU A 447 REMARK 465 PHE A 448 REMARK 465 ILE A 449 REMARK 465 LYS A 450 REMARK 465 PRO A 451 REMARK 465 GLU A 452 REMARK 465 ILE A 453 REMARK 465 SER A 454 REMARK 465 VAL A 455 REMARK 465 ASP A 456 REMARK 465 ASP A 457 REMARK 465 ASP A 458 REMARK 465 THR A 459 REMARK 465 GLU A 460 REMARK 465 THR A 461 REMARK 465 VAL A 462 REMARK 465 GLU A 463 REMARK 465 VAL A 464 REMARK 465 HIS A 465 REMARK 465 ASP A 466 REMARK 465 LYS A 467 REMARK 465 VAL A 468 REMARK 465 GLU A 469 REMARK 465 ALA A 470 REMARK 465 SER A 471 REMARK 465 ASP A 472 REMARK 465 LYS A 473 REMARK 465 VAL A 474 REMARK 465 VAL A 475 REMARK 465 THR A 476 REMARK 465 ASN A 477 REMARK 465 ASP A 478 REMARK 465 GLU A 479 REMARK 465 ASP A 480 REMARK 465 ASP A 481 REMARK 465 THR A 482 REMARK 465 GLY A 483 REMARK 465 LYS A 484 REMARK 465 LYS A 485 REMARK 465 THR A 486 REMARK 465 SER A 487 REMARK 465 VAL A 488 REMARK 465 LYS A 489 REMARK 465 ILE A 490 REMARK 465 GLU A 491 REMARK 465 ALA A 492 REMARK 465 ALA A 493 REMARK 465 ALA A 494 REMARK 465 GLU A 495 REMARK 465 LYS A 496 REMARK 465 ASP A 497 REMARK 465 ILE A 498 REMARK 465 ASP A 499 REMARK 465 LYS A 500 REMARK 465 LYS A 501 REMARK 465 THR A 502 REMARK 465 PRO A 503 REMARK 465 VAL A 504 REMARK 465 SER A 505 REMARK 465 PRO A 506 REMARK 465 GLU A 507 REMARK 465 PRO A 508 REMARK 465 ALA A 509 REMARK 465 VAL A 510 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 850 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 421 N ASN A 423 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 46 OH TYR A 73 6764 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 40 58.11 -119.06 REMARK 500 ARG A 47 170.90 64.95 REMARK 500 LEU A 92 79.23 -107.04 REMARK 500 ASN A 135 -61.00 -132.00 REMARK 500 LEU A 167 -70.94 -106.92 REMARK 500 TYR A 205 -142.57 57.17 REMARK 500 ASP A 338 -168.91 72.55 REMARK 500 GLU A 381 -17.52 -158.66 REMARK 500 TYR A 417 -37.03 76.71 REMARK 500 LEU A 422 -56.13 53.48 REMARK 500 PRO A 441 -71.60 -60.22 REMARK 500 SER A 443 -177.35 -179.10 REMARK 500 ALA A 445 -15.71 -150.28 REMARK 500 GLU A 543 -31.63 -139.39 REMARK 500 ASN A 561 174.51 -57.66 REMARK 500 ARG A 566 -71.86 -68.94 REMARK 500 ILE A 569 -54.96 -131.57 REMARK 500 LYS A 592 79.24 -100.36 REMARK 500 ARG A 647 131.79 -39.99 REMARK 500 ASP A 729 45.11 72.75 REMARK 500 SER A 756 -77.60 -147.99 REMARK 500 PHE A 848 -58.92 -19.77 REMARK 500 ARG A 850 -163.56 -112.99 REMARK 500 ILE A 907 -57.15 -124.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1423 DISTANCE = 7.62 ANGSTROMS DBREF 8R48 A 1 916 UNP P04045 PHSL1_SOLTU 51 966 SEQRES 1 A 916 THR LEU SER GLU LYS ILE HIS HIS PRO ILE THR GLU GLN SEQRES 2 A 916 GLY GLY GLU SER ASP LEU SER SER PHE ALA PRO ASP ALA SEQRES 3 A 916 ALA SER ILE THR SER SER ILE LYS TYR HIS ALA GLU PHE SEQRES 4 A 916 THR PRO VAL PHE SER PRO GLU ARG PHE GLU LEU PRO LYS SEQRES 5 A 916 ALA PHE PHE ALA THR ALA GLN SER VAL ARG ASP SER LEU SEQRES 6 A 916 LEU ILE ASN TRP ASN ALA THR TYR ASP ILE TYR GLU LYS SEQRES 7 A 916 LEU ASN MET LYS GLN ALA TYR TYR LEU SER MET GLU PHE SEQRES 8 A 916 LEU GLN GLY ARG ALA LEU LEU ASN ALA ILE GLY ASN LEU SEQRES 9 A 916 GLU LEU THR GLY ALA PHE ALA GLU ALA LEU LYS ASN LEU SEQRES 10 A 916 GLY HIS ASN LEU GLU ASN VAL ALA SER GLN GLU PRO ASP SEQRES 11 A 916 ALA ALA LEU GLY ASN GLY GLY LEU GLY ARG LEU ALA SER SEQRES 12 A 916 CYS PHE LEU ASP SER LEU ALA THR LEU ASN TYR PRO ALA SEQRES 13 A 916 TRP GLY TYR GLY LEU ARG TYR LYS TYR GLY LEU PHE LYS SEQRES 14 A 916 GLN ARG ILE THR LYS ASP GLY GLN GLU GLU VAL ALA GLU SEQRES 15 A 916 ASP TRP LEU GLU ILE GLY SER PRO TRP GLU VAL VAL ARG SEQRES 16 A 916 ASN ASP VAL SER TYR PRO ILE LYS PHE TYR GLY LYS VAL SEQRES 17 A 916 SER THR GLY SER ASP GLY LYS ARG TYR TRP ILE GLY GLY SEQRES 18 A 916 GLU ASP ILE LYS ALA VAL ALA TYR ASP VAL PRO ILE PRO SEQRES 19 A 916 GLY TYR LYS THR ARG THR THR ILE SER LEU ARG LEU TRP SEQRES 20 A 916 SER THR GLN VAL PRO SER ALA ASP PHE ASP LEU SER ALA SEQRES 21 A 916 PHE ASN ALA GLY GLU HIS THR LYS ALA CYS GLU ALA GLN SEQRES 22 A 916 ALA ASN ALA GLU LYS ILE CYS TYR ILE LEU TYR PRO GLY SEQRES 23 A 916 ASP GLU SER GLU GLU GLY LYS ILE LEU ARG LEU LYS GLN SEQRES 24 A 916 GLN TYR THR LEU CYS SER ALA SER LEU GLN ASP ILE ILE SEQRES 25 A 916 SER ARG PHE GLU ARG ARG SER GLY ASP ARG ILE LYS TRP SEQRES 26 A 916 GLU GLU PHE PRO GLU LYS VAL ALA VAL GLN MET ASN ASP SEQRES 27 A 916 THR HIS PRO THR LEU CYS ILE PRO GLU LEU MET ARG ILE SEQRES 28 A 916 LEU ILE ASP LEU LYS GLY LEU ASN TRP ASN GLU ALA TRP SEQRES 29 A 916 ASN ILE THR GLN ARG THR VAL ALA TYR THR ASN HIS THR SEQRES 30 A 916 VAL LEU PRO GLU ALA LEU GLU LYS TRP SER TYR GLU LEU SEQRES 31 A 916 MET GLN LYS LEU LEU PRO ARG HIS VAL GLU ILE ILE GLU SEQRES 32 A 916 ALA ILE ASP GLU GLU LEU VAL HIS GLU ILE VAL LEU LYS SEQRES 33 A 916 TYR GLY SER MET ASP LEU ASN LYS LEU GLU GLU LYS LEU SEQRES 34 A 916 THR THR MET ARG ILE LEU GLU ASN PHE ASP LEU PRO SER SEQRES 35 A 916 SER VAL ALA GLU LEU PHE ILE LYS PRO GLU ILE SER VAL SEQRES 36 A 916 ASP ASP ASP THR GLU THR VAL GLU VAL HIS ASP LYS VAL SEQRES 37 A 916 GLU ALA SER ASP LYS VAL VAL THR ASN ASP GLU ASP ASP SEQRES 38 A 916 THR GLY LYS LYS THR SER VAL LYS ILE GLU ALA ALA ALA SEQRES 39 A 916 GLU LYS ASP ILE ASP LYS LYS THR PRO VAL SER PRO GLU SEQRES 40 A 916 PRO ALA VAL ILE PRO PRO LYS LYS VAL ARG MET ALA ASN SEQRES 41 A 916 LEU CYS VAL VAL GLY GLY HIS ALA VAL ASN GLY VAL ALA SEQRES 42 A 916 GLU ILE HIS SER GLU ILE VAL LYS GLU GLU VAL PHE ASN SEQRES 43 A 916 ASP PHE TYR GLU LEU TRP PRO GLU LYS PHE GLN ASN LYS SEQRES 44 A 916 THR ASN GLY VAL THR PRO ARG ARG TRP ILE ARG PHE CYS SEQRES 45 A 916 ASN PRO PRO LEU SER ALA ILE ILE THR LYS TRP THR GLY SEQRES 46 A 916 THR GLU ASP TRP VAL LEU LYS THR GLU LYS LEU ALA GLU SEQRES 47 A 916 LEU GLN LYS PHE ALA ASP ASN GLU ASP LEU GLN ASN GLU SEQRES 48 A 916 TRP ARG GLU ALA LYS ARG SER ASN LYS ILE LYS VAL VAL SEQRES 49 A 916 SER PHE LEU LYS GLU LYS THR GLY TYR SER VAL VAL PRO SEQRES 50 A 916 ASP ALA MET PHE ASP ILE GLN VAL LYS ARG ILE HIS GLU SEQRES 51 A 916 TYR LYS ARG GLN LEU LEU ASN ILE PHE GLY ILE VAL TYR SEQRES 52 A 916 ARG TYR LYS LYS MET LYS GLU MET THR ALA ALA GLU ARG SEQRES 53 A 916 LYS THR ASN PHE VAL PRO ARG VAL CYS ILE PHE GLY GLY SEQRES 54 A 916 LYS ALA PHE ALA THR TYR VAL GLN ALA LYS ARG ILE VAL SEQRES 55 A 916 LYS PHE ILE THR ASP VAL GLY ALA THR ILE ASN HIS ASP SEQRES 56 A 916 PRO GLU ILE GLY ASP LEU LEU LYS VAL VAL PHE VAL PRO SEQRES 57 A 916 ASP TYR ASN VAL SER VAL ALA GLU LEU LEU ILE PRO ALA SEQRES 58 A 916 SER ASP LEU SER GLU HIS ILE SER THR ALA GLY MET GLU SEQRES 59 A 916 ALA SER GLY THR SER ASN MET LLP PHE ALA MET ASN GLY SEQRES 60 A 916 CYS ILE GLN ILE GLY THR LEU ASP GLY ALA ASN VAL GLU SEQRES 61 A 916 ILE ARG GLU GLU VAL GLY GLU GLU ASN PHE PHE LEU PHE SEQRES 62 A 916 GLY ALA GLN ALA HIS GLU ILE ALA GLY LEU ARG LYS GLU SEQRES 63 A 916 ARG ALA ASP GLY LYS PHE VAL PRO ASP GLU ARG PHE GLU SEQRES 64 A 916 GLU VAL LYS GLU PHE VAL ARG SER GLY ALA PHE GLY SER SEQRES 65 A 916 TYR ASN TYR ASP ASP LEU ILE GLY SER LEU GLU GLY ASN SEQRES 66 A 916 GLU GLY PHE GLY ARG ALA ASP TYR PHE LEU VAL GLY LYS SEQRES 67 A 916 ASP PHE PRO SER TYR ILE GLU CYS GLN GLU LYS VAL ASP SEQRES 68 A 916 GLU ALA TYR ARG ASP GLN LYS ARG TRP THR THR MET SER SEQRES 69 A 916 ILE LEU ASN THR ALA GLY SER TYR LYS PHE SER SER ASP SEQRES 70 A 916 ARG THR ILE HIS GLU TYR ALA LYS ASP ILE TRP ASN ILE SEQRES 71 A 916 GLU ALA VAL GLU ILE ALA MODRES 8R48 LLP A 762 LYS MODIFIED RESIDUE HET LLP A 762 24 HET GOL A1001 6 HET GOL A1002 6 HET GOL A1003 6 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM GOL GLYCEROL HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 GOL 3(C3 H8 O3) FORMUL 5 HOH *323(H2 O) HELIX 1 AA1 ASP A 25 THR A 40 1 16 HELIX 2 AA2 GLU A 49 ASN A 80 1 32 HELIX 3 AA3 ALA A 96 LEU A 104 1 9 HELIX 4 AA4 LEU A 106 LEU A 117 1 12 HELIX 5 AA5 ASN A 120 SER A 126 1 7 HELIX 6 AA6 GLY A 136 LEU A 152 1 17 HELIX 7 AA7 PRO A 252 PHE A 256 5 5 HELIX 8 AA8 ASP A 257 ALA A 263 1 7 HELIX 9 AA9 GLU A 265 CYS A 270 1 6 HELIX 10 AB1 CYS A 270 LYS A 278 1 9 HELIX 11 AB2 ILE A 279 TYR A 281 5 3 HELIX 12 AB3 SER A 289 GLY A 320 1 32 HELIX 13 AB4 LYS A 324 GLU A 326 5 3 HELIX 14 AB5 GLU A 327 LYS A 331 1 5 HELIX 15 AB6 THR A 339 THR A 342 5 4 HELIX 16 AB7 LEU A 343 LEU A 355 1 13 HELIX 17 AB8 ASN A 359 THR A 370 1 12 HELIX 18 AB9 TYR A 388 LEU A 395 1 8 HELIX 19 AC1 LEU A 395 LYS A 416 1 22 HELIX 20 AC2 LEU A 422 ARG A 433 1 12 HELIX 21 AC3 MET A 518 GLY A 526 1 9 HELIX 22 AC4 ALA A 533 GLU A 543 1 11 HELIX 23 AC5 PHE A 545 TRP A 552 1 8 HELIX 24 AC6 THR A 564 ILE A 569 1 6 HELIX 25 AC7 ASN A 573 GLY A 585 1 13 HELIX 26 AC8 GLU A 587 LEU A 591 5 5 HELIX 27 AC9 LYS A 592 ALA A 603 5 12 HELIX 28 AD1 ASN A 605 GLY A 632 1 28 HELIX 29 AD2 ARG A 653 GLU A 670 1 18 HELIX 30 AD3 THR A 672 PHE A 680 1 9 HELIX 31 AD4 TYR A 695 HIS A 714 1 20 HELIX 32 AD5 ILE A 718 ASP A 720 5 3 HELIX 33 AD6 ASN A 731 ILE A 739 1 9 HELIX 34 AD7 PRO A 740 SER A 742 5 3 HELIX 35 AD8 THR A 758 ASN A 766 1 9 HELIX 36 AD9 GLY A 776 GLY A 786 1 11 HELIX 37 AE1 GLN A 796 HIS A 798 5 3 HELIX 38 AE2 GLU A 799 ASP A 809 1 11 HELIX 39 AE3 ASP A 815 SER A 827 1 13 HELIX 40 AE4 TYR A 835 SER A 841 1 7 HELIX 41 AE5 LEU A 855 ASP A 876 1 22 HELIX 42 AE6 ASP A 876 GLY A 890 1 15 HELIX 43 AE7 SER A 891 PHE A 894 5 4 HELIX 44 AE8 SER A 895 ILE A 907 1 13 SHEET 1 AA1 9 VAL A 193 PHE A 204 0 SHEET 2 AA1 9 GLU A 222 PRO A 234 -1 O ALA A 228 N ARG A 195 SHEET 3 AA1 9 THR A 241 GLN A 250 -1 O GLN A 250 N LYS A 225 SHEET 4 AA1 9 ALA A 156 LEU A 161 1 N GLY A 158 O ARG A 245 SHEET 5 AA1 9 GLN A 83 LEU A 87 1 N TYR A 86 O TRP A 157 SHEET 6 AA1 9 VAL A 332 ASN A 337 1 O GLN A 335 N TYR A 85 SHEET 7 AA1 9 VAL A 371 THR A 374 1 O ALA A 372 N MET A 336 SHEET 8 AA1 9 ALA A 528 GLY A 531 1 O ALA A 528 N TYR A 373 SHEET 9 AA1 9 PHE A 556 ASN A 558 1 O GLN A 557 N VAL A 529 SHEET 1 AA2 2 LYS A 169 THR A 173 0 SHEET 2 AA2 2 GLY A 176 VAL A 180 -1 O VAL A 180 N LYS A 169 SHEET 1 AA3 2 LYS A 207 THR A 210 0 SHEET 2 AA3 2 ARG A 216 ILE A 219 -1 O TYR A 217 N SER A 209 SHEET 1 AA4 3 LYS A 385 SER A 387 0 SHEET 2 AA4 3 LYS A 515 ARG A 517 -1 O VAL A 516 N TRP A 386 SHEET 3 AA4 3 LEU A 435 GLU A 436 -1 N GLU A 436 O LYS A 515 SHEET 1 AA5 6 LEU A 722 VAL A 727 0 SHEET 2 AA5 6 ARG A 683 GLY A 688 1 N PHE A 687 O VAL A 727 SHEET 3 AA5 6 MET A 640 VAL A 645 1 N GLN A 644 O ILE A 686 SHEET 4 AA5 6 LEU A 744 HIS A 747 1 O LEU A 744 N ILE A 643 SHEET 5 AA5 6 ILE A 769 GLY A 772 1 O ILE A 771 N HIS A 747 SHEET 6 AA5 6 PHE A 790 LEU A 792 1 O PHE A 791 N GLN A 770 LINK C MET A 761 N LLP A 762 1555 1555 1.33 LINK C LLP A 762 N PHE A 763 1555 1555 1.33 CRYST1 127.107 127.107 118.693 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007867 0.004542 0.000000 0.00000 SCALE2 0.000000 0.009084 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008425 0.00000