HEADER TRANSCRIPTION 22-NOV-23 8R6K TITLE CRYSTAL STRUCTURE OF CANDIDA GLABRATA BDF1 BROMODOMAIN 1 BOUND TO A TITLE 2 PHENYLTRIAZINE LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CANDIDA GLABRATA STRAIN CBS138 CHROMOSOME C COMPLETE COMPND 3 SEQUENCE; COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NAKASEOMYCES GLABRATUS; SOURCE 3 ORGANISM_TAXID: 5478; SOURCE 4 GENE: CAGL0C02541G; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BROMODOMAIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.PETOSA,K.WEI,C.E.MCKENNA,J.GOVIN REVDAT 1 30-OCT-24 8R6K 0 JRNL AUTH K.WEI,M.ARLOTTO,J.M.OVERHULSE,T.A.DINH,Y.ZHOU,N.J.DUPPER, JRNL AUTH 2 J.YANG,B.A.KASHEMIROV,H.DAWI,C.GARNAUD,G.BOURGINE,F.MIETTON, JRNL AUTH 3 M.CHAMPLEBOUX,A.LARABI,Y.HAYAT,R.L.INDORATO, JRNL AUTH 4 M.NOIRCLERC-SAVOYE,D.SKOUFIAS,M.CORNET,G.RABUT,C.E.MCKENNA, JRNL AUTH 5 C.PETOSA,J.GOVIN JRNL TITL HUMANIZED CANDIDA AND NANOBIT ASSAYS EXPEDITE DISCOVERY OF JRNL TITL 2 BDF1 BROMODOMAIN INHIBITORS WITH ANTIFUNGAL POTENTIAL JRNL TITL 3 AGAINST INVASIVE CANDIDA INFECTION JRNL REF ADVANCED SCIENCE 2024 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.4600 - 5.0200 1.00 2714 149 0.1779 0.2256 REMARK 3 2 5.0200 - 3.9800 1.00 2584 156 0.1485 0.1737 REMARK 3 3 3.9800 - 3.4800 1.00 2564 130 0.1674 0.2167 REMARK 3 4 3.4800 - 3.1600 1.00 2538 144 0.1849 0.2322 REMARK 3 5 3.1600 - 2.9300 1.00 2515 140 0.2255 0.2689 REMARK 3 6 2.9300 - 2.7600 1.00 2525 149 0.2354 0.2617 REMARK 3 7 2.7600 - 2.6200 1.00 2524 138 0.2374 0.3028 REMARK 3 8 2.6200 - 2.5100 1.00 2538 120 0.2439 0.2908 REMARK 3 9 2.5100 - 2.4100 1.00 2523 116 0.2588 0.2773 REMARK 3 10 2.4100 - 2.3300 1.00 2512 136 0.2676 0.3022 REMARK 3 11 2.3300 - 2.2600 1.00 2471 151 0.2977 0.3191 REMARK 3 12 2.2600 - 2.1900 1.00 2530 132 0.3068 0.3521 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.282 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.521 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3747 REMARK 3 ANGLE : 0.812 5066 REMARK 3 CHIRALITY : 0.049 543 REMARK 3 PLANARITY : 0.009 666 REMARK 3 DIHEDRAL : 7.588 483 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8R6K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1292134505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32208 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 64.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.072 M NAH2PO4, 1.73 M K2HPO4 (PH REMARK 280 8.2), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 64.35000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 64.35000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 74.10450 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 64.35000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 64.35000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 74.10450 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 64.35000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 64.35000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 74.10450 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 64.35000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 64.35000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 74.10450 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 64.35000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.35000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 74.10450 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 64.35000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 64.35000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 74.10450 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 64.35000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 64.35000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 74.10450 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 64.35000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 64.35000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 74.10450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 509 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 514 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 515 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1049 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1084 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1091 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 516 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 524 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 124 REMARK 465 ALA A 125 REMARK 465 GLY B 124 REMARK 465 ALA B 125 REMARK 465 ASP B 237 REMARK 465 GLY C 124 REMARK 465 ALA C 125 REMARK 465 GLY D 124 REMARK 465 ALA D 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 184 O HOH A 401 1.94 REMARK 500 O HOH A 443 O HOH A 457 2.03 REMARK 500 O HOH A 485 O HOH A 489 2.07 REMARK 500 O PRO B 164 O HOH B 1001 2.12 REMARK 500 O HOH B 1009 O HOH D 453 2.12 REMARK 500 O HOH A 513 O HOH A 516 2.15 REMARK 500 OE1 GLN B 217 O HOH B 1002 2.15 REMARK 500 OD1 ASN C 199 NE2 GLN C 223 2.17 REMARK 500 O HOH A 491 O HOH A 512 2.17 REMARK 500 O HOH A 503 O HOH A 512 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1019 O HOH C 410 5555 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO C 164 CD PRO C 164 N -0.222 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP D 157 115.23 -37.73 REMARK 500 TYR D 166 -57.32 -138.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 181 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 515 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 516 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B1098 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B1099 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH B1100 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH D 487 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH D 488 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH D 489 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH D 490 DISTANCE = 6.54 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 304 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 209 O REMARK 620 2 HOH A 447 O 92.0 REMARK 620 3 HOH A 480 O 78.8 107.5 REMARK 620 4 HOH A 483 O 73.3 165.3 70.9 REMARK 620 5 ASN B 162 O 109.9 33.8 82.8 152.6 REMARK 620 6 HOH B1061 O 121.8 60.1 65.6 128.3 26.3 REMARK 620 N 1 2 3 4 5 DBREF 8R6K A 128 237 UNP Q6FWV7 Q6FWV7_CANGA 108 217 DBREF 8R6K B 128 237 UNP Q6FWV7 Q6FWV7_CANGA 108 217 DBREF 8R6K C 128 237 UNP Q6FWV7 Q6FWV7_CANGA 108 217 DBREF 8R6K D 128 237 UNP Q6FWV7 Q6FWV7_CANGA 108 217 SEQADV 8R6K GLY A 124 UNP Q6FWV7 EXPRESSION TAG SEQADV 8R6K ALA A 125 UNP Q6FWV7 EXPRESSION TAG SEQADV 8R6K MET A 126 UNP Q6FWV7 EXPRESSION TAG SEQADV 8R6K GLY A 127 UNP Q6FWV7 EXPRESSION TAG SEQADV 8R6K GLY B 124 UNP Q6FWV7 EXPRESSION TAG SEQADV 8R6K ALA B 125 UNP Q6FWV7 EXPRESSION TAG SEQADV 8R6K MET B 126 UNP Q6FWV7 EXPRESSION TAG SEQADV 8R6K GLY B 127 UNP Q6FWV7 EXPRESSION TAG SEQADV 8R6K GLY C 124 UNP Q6FWV7 EXPRESSION TAG SEQADV 8R6K ALA C 125 UNP Q6FWV7 EXPRESSION TAG SEQADV 8R6K MET C 126 UNP Q6FWV7 EXPRESSION TAG SEQADV 8R6K GLY C 127 UNP Q6FWV7 EXPRESSION TAG SEQADV 8R6K GLY D 124 UNP Q6FWV7 EXPRESSION TAG SEQADV 8R6K ALA D 125 UNP Q6FWV7 EXPRESSION TAG SEQADV 8R6K MET D 126 UNP Q6FWV7 EXPRESSION TAG SEQADV 8R6K GLY D 127 UNP Q6FWV7 EXPRESSION TAG SEQRES 1 A 114 GLY ALA MET GLY ILE PRO GLN HIS GLN GLN LYS HIS ALA SEQRES 2 A 114 LEU MET ALA ILE LYS ALA VAL LYS ARG LEU LYS ASP ALA SEQRES 3 A 114 ARG PRO PHE LEU GLN PRO VAL ASP PRO VAL ALA LEU ASN SEQRES 4 A 114 ILE PRO LEU TYR PHE ASN PHE ILE LYS ARG PRO MET ASP SEQRES 5 A 114 LEU GLN THR ILE GLU ARG LYS LEU ASN ALA ASN ALA TYR SEQRES 6 A 114 GLU THR PRO GLU GLN ILE THR GLU ASP PHE ASN LEU MET SEQRES 7 A 114 VAL GLU ASN SER ALA LYS PHE ASN GLY PRO THR ALA VAL SEQRES 8 A 114 ILE THR GLN MET GLY ARG ASN ILE GLN ALA ALA PHE GLU SEQRES 9 A 114 LYS HIS MET LEU ASN MET PRO ALA LYS ASP SEQRES 1 B 114 GLY ALA MET GLY ILE PRO GLN HIS GLN GLN LYS HIS ALA SEQRES 2 B 114 LEU MET ALA ILE LYS ALA VAL LYS ARG LEU LYS ASP ALA SEQRES 3 B 114 ARG PRO PHE LEU GLN PRO VAL ASP PRO VAL ALA LEU ASN SEQRES 4 B 114 ILE PRO LEU TYR PHE ASN PHE ILE LYS ARG PRO MET ASP SEQRES 5 B 114 LEU GLN THR ILE GLU ARG LYS LEU ASN ALA ASN ALA TYR SEQRES 6 B 114 GLU THR PRO GLU GLN ILE THR GLU ASP PHE ASN LEU MET SEQRES 7 B 114 VAL GLU ASN SER ALA LYS PHE ASN GLY PRO THR ALA VAL SEQRES 8 B 114 ILE THR GLN MET GLY ARG ASN ILE GLN ALA ALA PHE GLU SEQRES 9 B 114 LYS HIS MET LEU ASN MET PRO ALA LYS ASP SEQRES 1 C 114 GLY ALA MET GLY ILE PRO GLN HIS GLN GLN LYS HIS ALA SEQRES 2 C 114 LEU MET ALA ILE LYS ALA VAL LYS ARG LEU LYS ASP ALA SEQRES 3 C 114 ARG PRO PHE LEU GLN PRO VAL ASP PRO VAL ALA LEU ASN SEQRES 4 C 114 ILE PRO LEU TYR PHE ASN PHE ILE LYS ARG PRO MET ASP SEQRES 5 C 114 LEU GLN THR ILE GLU ARG LYS LEU ASN ALA ASN ALA TYR SEQRES 6 C 114 GLU THR PRO GLU GLN ILE THR GLU ASP PHE ASN LEU MET SEQRES 7 C 114 VAL GLU ASN SER ALA LYS PHE ASN GLY PRO THR ALA VAL SEQRES 8 C 114 ILE THR GLN MET GLY ARG ASN ILE GLN ALA ALA PHE GLU SEQRES 9 C 114 LYS HIS MET LEU ASN MET PRO ALA LYS ASP SEQRES 1 D 114 GLY ALA MET GLY ILE PRO GLN HIS GLN GLN LYS HIS ALA SEQRES 2 D 114 LEU MET ALA ILE LYS ALA VAL LYS ARG LEU LYS ASP ALA SEQRES 3 D 114 ARG PRO PHE LEU GLN PRO VAL ASP PRO VAL ALA LEU ASN SEQRES 4 D 114 ILE PRO LEU TYR PHE ASN PHE ILE LYS ARG PRO MET ASP SEQRES 5 D 114 LEU GLN THR ILE GLU ARG LYS LEU ASN ALA ASN ALA TYR SEQRES 6 D 114 GLU THR PRO GLU GLN ILE THR GLU ASP PHE ASN LEU MET SEQRES 7 D 114 VAL GLU ASN SER ALA LYS PHE ASN GLY PRO THR ALA VAL SEQRES 8 D 114 ILE THR GLN MET GLY ARG ASN ILE GLN ALA ALA PHE GLU SEQRES 9 D 114 LYS HIS MET LEU ASN MET PRO ALA LYS ASP HET Y78 A 301 40 HET PO4 A 302 5 HET PO4 A 303 5 HET K A 304 1 HET Y78 B 900 40 HET Y78 C 301 40 HET PO4 C 302 5 HET PO4 D 301 5 HETNAM Y78 6-METHYL-~{N}-[(5-METHYLFURAN-2-YL)METHYL]-3-(4- HETNAM 2 Y78 METHYLPHENYL)-1,2,4-TRIAZIN-5-AMINE HETNAM PO4 PHOSPHATE ION HETNAM K POTASSIUM ION FORMUL 5 Y78 3(C17 H18 N4 O) FORMUL 6 PO4 4(O4 P 3-) FORMUL 8 K K 1+ FORMUL 13 HOH *432(H2 O) HELIX 1 AA1 PRO A 129 ARG A 145 1 17 HELIX 2 AA2 LEU A 146 LEU A 153 5 8 HELIX 3 AA3 LEU A 165 ILE A 170 1 6 HELIX 4 AA4 ASP A 175 ALA A 185 1 11 HELIX 5 AA5 THR A 190 GLY A 210 1 21 HELIX 6 AA6 ALA A 213 ASN A 232 1 20 HELIX 7 AA7 PRO B 129 LEU B 146 1 18 HELIX 8 AA8 LYS B 147 LEU B 153 5 7 HELIX 9 AA9 LEU B 165 ILE B 170 1 6 HELIX 10 AB1 ASP B 175 ALA B 185 1 11 HELIX 11 AB2 THR B 190 ASN B 209 1 20 HELIX 12 AB3 ALA B 213 LEU B 231 1 19 HELIX 13 AB4 PRO C 129 ARG C 145 1 17 HELIX 14 AB5 LEU C 146 LEU C 153 5 8 HELIX 15 AB6 LEU C 165 ILE C 170 1 6 HELIX 16 AB7 ASP C 175 ALA C 185 1 11 HELIX 17 AB8 THR C 190 GLY C 210 1 21 HELIX 18 AB9 ALA C 213 ASN C 232 1 20 HELIX 19 AC1 PRO D 129 ARG D 145 1 17 HELIX 20 AC2 LEU D 146 LEU D 153 5 8 HELIX 21 AC3 LEU D 161 TYR D 166 1 6 HELIX 22 AC4 ASP D 175 ALA D 185 1 11 HELIX 23 AC5 THR D 190 GLY D 210 1 21 HELIX 24 AC6 ALA D 213 LEU D 231 1 19 LINK O ASN A 209 K K A 304 1555 1555 2.72 LINK K K A 304 O HOH A 447 1555 1555 3.00 LINK K K A 304 O HOH A 480 1555 1555 2.74 LINK K K A 304 O HOH A 483 1555 1555 3.39 LINK K K A 304 O ASN B 162 2565 1555 2.72 LINK K K A 304 O HOH B1061 1555 2565 3.34 CRYST1 128.700 128.700 148.209 90.00 90.00 90.00 I 4 2 2 64 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007770 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007770 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006747 0.00000