HEADER PROTEIN BINDING 23-NOV-23 8R6T TITLE NMR SOLUTION STRUCTURE OF THYROPIN IRTHY-CD FROM THE HARD TICK IXODES TITLE 2 RICINUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TWO THYROPIN PROTEIN (FRAGMENT); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: IXODES RICINUS; SOURCE 3 ORGANISM_COMMON: CASTOR BEAN TICK; SOURCE 4 ORGANISM_TAXID: 34613; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURE FROM CYANA 3.98.13, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR P.SRB,V.VEVERKA,Z.MATOUSKOVA,K.ORSAGHOVA,M.MARES REVDAT 2 06-MAR-24 8R6T 1 JRNL REVDAT 1 28-FEB-24 8R6T 0 JRNL AUTH Z.MATOUSKOVA,K.ORSAGHOVA,P.SRB,J.PYTELKOVA,Z.KUKACKA,M.BUSA, JRNL AUTH 2 O.HAJDUSEK,R.SIMA,M.FABRY,P.NOVAK,M.HORN,P.KOPACEK,M.MARES JRNL TITL AN UNUSUAL TWO-DOMAIN THYROPIN FROM TICK SALIVA: NMR JRNL TITL 2 SOLUTION STRUCTURE AND HIGHLY SELECTIVE INHIBITION OF JRNL TITL 3 CYSTEINE CATHEPSINS MODULATED BY GLYCOSAMINOGLYCANS. JRNL REF INT J MOL SCI V. 25 2024 JRNL REFN ESSN 1422-0067 JRNL PMID 38396918 JRNL DOI 10.3390/IJMS25042240 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8R6T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1292134561. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 8.0 REMARK 210 IONIC STRENGTH : 125 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 200 UM [U-13C; U-15N] TYROPIN, REMARK 210 100 MM SODIUM CHLORIDE, 25 MM REMARK 210 TRIS, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY; 3D 1H-15N REMARK 210 NOESY; 3D HNCACB; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCACO REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRFAM-SPARKY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 GLY A 76 REMARK 465 ALA A 77 REMARK 465 MET A 78 REMARK 465 GLY A 79 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 92 -178.10 63.18 REMARK 500 1 ASP A 98 -60.25 -144.21 REMARK 500 1 ASP A 99 43.03 -93.05 REMARK 500 1 PRO A 101 86.05 -69.72 REMARK 500 1 HIS A 120 108.31 -172.07 REMARK 500 1 SER A 127 -35.93 -135.15 REMARK 500 1 ARG A 135 103.33 -179.10 REMARK 500 1 CYS A 139 -73.90 -95.99 REMARK 500 1 HIS A 146 50.36 -174.21 REMARK 500 2 HIS A 93 119.36 -174.01 REMARK 500 2 SER A 94 83.83 57.73 REMARK 500 2 ASP A 98 66.85 -166.63 REMARK 500 2 ASP A 99 -170.09 61.23 REMARK 500 2 LYS A 102 51.57 -100.77 REMARK 500 2 SER A 127 -35.97 -134.35 REMARK 500 2 ARG A 135 92.51 -179.08 REMARK 500 2 HIS A 146 52.24 -176.56 REMARK 500 3 SER A 94 172.65 60.43 REMARK 500 3 ASP A 98 42.08 -166.91 REMARK 500 3 ASP A 99 46.87 -179.20 REMARK 500 3 LYS A 102 58.67 -96.92 REMARK 500 3 SER A 127 -36.19 -137.45 REMARK 500 3 ARG A 135 105.18 63.23 REMARK 500 3 SER A 136 -50.72 -146.96 REMARK 500 3 HIS A 146 47.96 -176.34 REMARK 500 4 ASP A 99 -170.65 -61.10 REMARK 500 4 PRO A 101 93.69 -69.75 REMARK 500 4 SER A 127 -35.78 -132.12 REMARK 500 4 ARG A 135 123.69 -178.87 REMARK 500 4 SER A 136 -64.27 -179.07 REMARK 500 5 THR A 92 177.52 58.35 REMARK 500 5 ASP A 98 -62.20 -164.43 REMARK 500 5 PRO A 101 98.07 -69.75 REMARK 500 5 SER A 127 -35.80 -132.98 REMARK 500 5 CYS A 139 -74.34 -71.75 REMARK 500 6 THR A 92 -61.79 -102.55 REMARK 500 6 SER A 94 89.18 -167.11 REMARK 500 6 GLN A 95 96.01 58.27 REMARK 500 6 ASP A 99 -179.73 57.48 REMARK 500 6 PRO A 101 93.20 -69.79 REMARK 500 6 SER A 127 -35.80 -133.32 REMARK 500 6 LEU A 131 -57.24 -125.75 REMARK 500 6 ARG A 134 -72.21 -115.94 REMARK 500 6 SER A 136 -67.45 -179.36 REMARK 500 6 CYS A 139 -74.76 -82.74 REMARK 500 6 HIS A 146 47.83 -175.48 REMARK 500 7 THR A 92 -174.47 62.03 REMARK 500 7 HIS A 93 102.62 62.38 REMARK 500 7 VAL A 96 90.55 53.54 REMARK 500 7 ASP A 99 -169.81 -61.35 REMARK 500 REMARK 500 THIS ENTRY HAS 230 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34883 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF THYROPIN IRTHY-CD FROM THE HARD TICK REMARK 900 IXODES RICINUS DBREF1 8R6T A 80 147 UNP A0A131Y7Z7_IXORI DBREF2 8R6T A A0A131Y7Z7 104 171 SEQADV 8R6T GLY A 76 UNP A0A131Y7Z EXPRESSION TAG SEQADV 8R6T ALA A 77 UNP A0A131Y7Z EXPRESSION TAG SEQADV 8R6T MET A 78 UNP A0A131Y7Z EXPRESSION TAG SEQADV 8R6T GLY A 79 UNP A0A131Y7Z EXPRESSION TAG SEQADV 8R6T ASP A 98 UNP A0A131Y7Z VAL 122 CONFLICT SEQADV 8R6T ALA A 106 UNP A0A131Y7Z THR 130 CONFLICT SEQRES 1 A 72 GLY ALA MET GLY LYS CYS LEU ALA GLU HIS HIS GLU LYS SEQRES 2 A 72 SER LYS SER THR HIS SER GLN VAL GLY ASP ASP ILE PRO SEQRES 3 A 72 LYS CYS ASN LEU ALA SER GLY TYR TYR GLU GLN MET GLN SEQRES 4 A 72 CYS ASN THR GLN GLN HIS TRP CYS VAL ASP PRO GLU SER SEQRES 5 A 72 GLY THR ALA LEU GLY GLU ARG ARG SER GLY GLY CYS THR SEQRES 6 A 72 GLU ALA ALA ARG ASP HIS CYS HELIX 1 AA1 LYS A 80 SER A 91 1 12 HELIX 2 AA2 CYS A 139 CYS A 147 1 9 SHEET 1 AA1 2 MET A 113 CYS A 115 0 SHEET 2 AA1 2 HIS A 120 CYS A 122 -1 O TRP A 121 N GLN A 114 SSBOND 1 CYS A 81 CYS A 103 1555 1555 2.11 SSBOND 2 CYS A 115 CYS A 139 1555 1555 1.99 SSBOND 3 CYS A 122 CYS A 147 1555 1555 2.00 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1