HEADER PLANT PROTEIN 24-NOV-23 8R7D TITLE COMPLEX OF RICE BLAST (MAGNAPORTHE ORYZAE) MUTANT EFFECTOR PROTEIN TITLE 2 PWL2-SNDE WITH THE HMA DOMAIN OF OSHIPP43 FROM RICE (ORYZA SATIVA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: OS01G0507700 PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PWL2 PROTEIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: ASIAN CULTIVATED RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 GENE: OS01G0507700; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PYRICULARIA ORYZAE; SOURCE 10 ORGANISM_TAXID: 318829; SOURCE 11 GENE: MGG_04301; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PATHOGEN EFFECTOR, HOST TARGET PROTEIN, RICE BLAST, DISEASE KEYWDS 2 RESISTANCE, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.ZDRZALEK,M.J.BANFIELD REVDAT 1 31-JAN-24 8R7D 0 JRNL AUTH R.ZDRZALEK,Y.XI,T.LANGNER,A.R.BENTHAM,Y.PETIT-HOUDENOT, JRNL AUTH 2 A.HARANT,M.SHIMIZU,V.WERE,N.J.TALBOT,R.TERAUCHI,S.KAMOUN, JRNL AUTH 3 M.J.BANFIELD JRNL TITL BIOENGINEERING A PLANT NLR IMMUNE RECEPTOR WITH A ROBUST JRNL TITL 2 RECOGNITION INTERFACE TOWARDS A CONSERVED FUNGAL PATHOGEN JRNL TITL 3 EFFECTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 741 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 944 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2821 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.86000 REMARK 3 B22 (A**2) : 1.52000 REMARK 3 B33 (A**2) : 1.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.034 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.352 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.267 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.106 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.848 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2923 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2652 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3932 ; 1.725 ; 1.861 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6110 ; 0.592 ; 1.810 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 361 ; 7.043 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 36 ; 8.016 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 483 ;17.754 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 362 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3673 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 759 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1441 ; 1.759 ; 2.247 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1441 ; 1.756 ; 2.247 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1797 ; 2.815 ; 4.027 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1798 ; 2.814 ; 4.028 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1482 ; 2.638 ; 2.633 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1481 ; 2.629 ; 2.631 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2134 ; 4.222 ; 4.690 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3167 ; 5.868 ;22.860 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3167 ; 5.859 ;22.850 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): -2.1200 23.2590 14.8700 REMARK 3 T TENSOR REMARK 3 T11: 0.0453 T22: 0.0197 REMARK 3 T33: 0.1785 T12: 0.0238 REMARK 3 T13: -0.0191 T23: -0.0416 REMARK 3 L TENSOR REMARK 3 L11: 5.8087 L22: 3.8667 REMARK 3 L33: 8.5325 L12: -0.6809 REMARK 3 L13: -1.5490 L23: 0.9701 REMARK 3 S TENSOR REMARK 3 S11: -0.1020 S12: -0.2299 S13: 0.6923 REMARK 3 S21: 0.0742 S22: -0.0035 S23: 0.1357 REMARK 3 S31: -0.5363 S32: -0.2294 S33: 0.1055 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 23 B 132 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5150 20.1130 10.0620 REMARK 3 T TENSOR REMARK 3 T11: 0.0404 T22: 0.0207 REMARK 3 T33: 0.1081 T12: -0.0165 REMARK 3 T13: 0.0289 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 4.0481 L22: 3.1918 REMARK 3 L33: 4.1420 L12: 1.5899 REMARK 3 L13: 1.0466 L23: 1.9083 REMARK 3 S TENSOR REMARK 3 S11: -0.1322 S12: 0.0861 S13: 0.3201 REMARK 3 S21: -0.3444 S22: 0.1475 S23: -0.1557 REMARK 3 S31: -0.2166 S32: 0.2601 S33: -0.0153 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 26 C 94 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9610 52.1320 6.7560 REMARK 3 T TENSOR REMARK 3 T11: 0.1039 T22: 0.0141 REMARK 3 T33: 0.1296 T12: 0.0069 REMARK 3 T13: -0.0665 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 4.2141 L22: 2.9460 REMARK 3 L33: 8.4368 L12: -0.6175 REMARK 3 L13: -1.3579 L23: -0.7844 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: 0.1634 S13: 0.4894 REMARK 3 S21: -0.4545 S22: -0.0080 S23: 0.3003 REMARK 3 S31: -0.3375 S32: -0.2350 S33: -0.0197 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 23 D 133 REMARK 3 ORIGIN FOR THE GROUP (A): 29.2630 42.0830 10.7860 REMARK 3 T TENSOR REMARK 3 T11: 0.0482 T22: 0.0268 REMARK 3 T33: 0.0405 T12: -0.0115 REMARK 3 T13: 0.0137 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 2.6612 L22: 4.7716 REMARK 3 L33: 3.0084 L12: 1.0304 REMARK 3 L13: 0.7538 L23: 0.8681 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: -0.2054 S13: -0.0522 REMARK 3 S21: -0.2190 S22: -0.0404 S23: 0.0573 REMARK 3 S31: 0.2743 S32: -0.1807 S33: 0.0521 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8R7D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1292134853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13157 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 47.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.28500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : 1.35100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM FORMATE, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.18900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.95050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.40200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.95050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.18900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.40200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 4 REMARK 465 ASP A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 ASP A 9 REMARK 465 MET A 10 REMARK 465 CYS A 11 REMARK 465 SER A 12 REMARK 465 LEU A 13 REMARK 465 THR A 14 REMARK 465 GLU A 15 REMARK 465 THR A 16 REMARK 465 LYS A 17 REMARK 465 GLU A 18 REMARK 465 ALA A 19 REMARK 465 LEU A 20 REMARK 465 LYS A 21 REMARK 465 LEU A 22 REMARK 465 ARG A 23 REMARK 465 LYS A 24 REMARK 465 LYS A 25 REMARK 465 TYR A 95 REMARK 465 VAL A 96 REMARK 465 PRO A 97 REMARK 465 TYR A 98 REMARK 465 THR A 99 REMARK 465 MET A 100 REMARK 465 THR A 101 REMARK 465 THR A 102 REMARK 465 TYR A 103 REMARK 465 PRO A 104 REMARK 465 TYR A 105 REMARK 465 VAL A 106 REMARK 465 GLY A 107 REMARK 465 GLY A 108 REMARK 465 ALA A 109 REMARK 465 TYR A 110 REMARK 465 ASP A 111 REMARK 465 LYS A 112 REMARK 465 LYS A 113 REMARK 465 ALA A 114 REMARK 465 PRO A 115 REMARK 465 ALA A 116 REMARK 465 GLY A 117 REMARK 465 PHE A 118 REMARK 465 VAL A 119 REMARK 465 ARG A 120 REMARK 465 GLY A 121 REMARK 465 ASN A 122 REMARK 465 PRO A 123 REMARK 465 ALA A 124 REMARK 465 ALA A 125 REMARK 465 MET A 126 REMARK 465 ALA A 127 REMARK 465 ASP A 128 REMARK 465 PRO A 129 REMARK 465 SER A 130 REMARK 465 ALA A 131 REMARK 465 PRO A 132 REMARK 465 GLU A 133 REMARK 465 VAL A 134 REMARK 465 ARG A 135 REMARK 465 TYR A 136 REMARK 465 MET A 137 REMARK 465 THR A 138 REMARK 465 MET A 139 REMARK 465 PHE A 140 REMARK 465 SER A 141 REMARK 465 ASP A 142 REMARK 465 GLU A 143 REMARK 465 ASN A 144 REMARK 465 VAL A 145 REMARK 465 ASP A 146 REMARK 465 SER A 147 REMARK 465 CYS A 148 REMARK 465 SER A 149 REMARK 465 ILE A 150 REMARK 465 MET A 151 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 CYS B 3 REMARK 465 ASN B 4 REMARK 465 ASN B 5 REMARK 465 ILE B 6 REMARK 465 ILE B 7 REMARK 465 LEU B 8 REMARK 465 PRO B 9 REMARK 465 PHE B 10 REMARK 465 ALA B 11 REMARK 465 LEU B 12 REMARK 465 VAL B 13 REMARK 465 PHE B 14 REMARK 465 PHE B 15 REMARK 465 SER B 16 REMARK 465 THR B 17 REMARK 465 THR B 18 REMARK 465 VAL B 19 REMARK 465 THR B 20 REMARK 465 ALA B 21 REMARK 465 GLY B 22 REMARK 465 GLU B 133 REMARK 465 HIS B 134 REMARK 465 ARG B 135 REMARK 465 GLU B 136 REMARK 465 GLN B 137 REMARK 465 ARG B 138 REMARK 465 GLU B 139 REMARK 465 GLU B 140 REMARK 465 GLY B 141 REMARK 465 CYS B 142 REMARK 465 ASN B 143 REMARK 465 ILE B 144 REMARK 465 MET B 145 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 VAL C 3 REMARK 465 LEU C 4 REMARK 465 ASP C 5 REMARK 465 SER C 6 REMARK 465 LEU C 7 REMARK 465 SER C 8 REMARK 465 ASP C 9 REMARK 465 MET C 10 REMARK 465 CYS C 11 REMARK 465 SER C 12 REMARK 465 LEU C 13 REMARK 465 THR C 14 REMARK 465 GLU C 15 REMARK 465 THR C 16 REMARK 465 LYS C 17 REMARK 465 GLU C 18 REMARK 465 ALA C 19 REMARK 465 LEU C 20 REMARK 465 LYS C 21 REMARK 465 LEU C 22 REMARK 465 ARG C 23 REMARK 465 LYS C 24 REMARK 465 LYS C 25 REMARK 465 TYR C 95 REMARK 465 VAL C 96 REMARK 465 PRO C 97 REMARK 465 TYR C 98 REMARK 465 THR C 99 REMARK 465 MET C 100 REMARK 465 THR C 101 REMARK 465 THR C 102 REMARK 465 TYR C 103 REMARK 465 PRO C 104 REMARK 465 TYR C 105 REMARK 465 VAL C 106 REMARK 465 GLY C 107 REMARK 465 GLY C 108 REMARK 465 ALA C 109 REMARK 465 TYR C 110 REMARK 465 ASP C 111 REMARK 465 LYS C 112 REMARK 465 LYS C 113 REMARK 465 ALA C 114 REMARK 465 PRO C 115 REMARK 465 ALA C 116 REMARK 465 GLY C 117 REMARK 465 PHE C 118 REMARK 465 VAL C 119 REMARK 465 ARG C 120 REMARK 465 GLY C 121 REMARK 465 ASN C 122 REMARK 465 PRO C 123 REMARK 465 ALA C 124 REMARK 465 ALA C 125 REMARK 465 MET C 126 REMARK 465 ALA C 127 REMARK 465 ASP C 128 REMARK 465 PRO C 129 REMARK 465 SER C 130 REMARK 465 ALA C 131 REMARK 465 PRO C 132 REMARK 465 GLU C 133 REMARK 465 VAL C 134 REMARK 465 ARG C 135 REMARK 465 TYR C 136 REMARK 465 MET C 137 REMARK 465 THR C 138 REMARK 465 MET C 139 REMARK 465 PHE C 140 REMARK 465 SER C 141 REMARK 465 ASP C 142 REMARK 465 GLU C 143 REMARK 465 ASN C 144 REMARK 465 VAL C 145 REMARK 465 ASP C 146 REMARK 465 SER C 147 REMARK 465 CYS C 148 REMARK 465 SER C 149 REMARK 465 ILE C 150 REMARK 465 MET C 151 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 CYS D 3 REMARK 465 ASN D 4 REMARK 465 ASN D 5 REMARK 465 ILE D 6 REMARK 465 ILE D 7 REMARK 465 LEU D 8 REMARK 465 PRO D 9 REMARK 465 PHE D 10 REMARK 465 ALA D 11 REMARK 465 LEU D 12 REMARK 465 VAL D 13 REMARK 465 PHE D 14 REMARK 465 PHE D 15 REMARK 465 SER D 16 REMARK 465 THR D 17 REMARK 465 THR D 18 REMARK 465 VAL D 19 REMARK 465 THR D 20 REMARK 465 ALA D 21 REMARK 465 GLY D 22 REMARK 465 HIS D 134 REMARK 465 ARG D 135 REMARK 465 GLU D 136 REMARK 465 GLN D 137 REMARK 465 ARG D 138 REMARK 465 GLU D 139 REMARK 465 GLU D 140 REMARK 465 GLY D 141 REMARK 465 CYS D 142 REMARK 465 ASN D 143 REMARK 465 ILE D 144 REMARK 465 MET D 145 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 52 CB - CA - C ANGL. DEV. = -14.9 DEGREES REMARK 500 TYR B 53 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 73 51.39 -105.91 REMARK 500 TYR C 73 52.55 -105.42 REMARK 500 PRO D 55 154.70 -45.90 REMARK 500 PRO D 58 -79.46 -31.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS D 132 GLU D 133 -146.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 44 0.09 SIDE CHAIN REMARK 500 ARG B 89 0.10 SIDE CHAIN REMARK 500 ARG D 75 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8R7D A 1 151 UNP Q8LJL3 Q8LJL3_ORYSJ 1 151 DBREF 8R7D B 1 145 UNP G5EI71 G5EI71_MAGO7 1 145 DBREF 8R7D C 1 151 UNP Q8LJL3 Q8LJL3_ORYSJ 1 151 DBREF 8R7D D 1 145 UNP G5EI71 G5EI71_MAGO7 1 145 SEQADV 8R7D ARG B 42 UNP G5EI71 SER 42 ENGINEERED MUTATION SEQADV 8R7D ARG B 52 UNP G5EI71 ASN 52 ENGINEERED MUTATION SEQADV 8R7D ARG B 62 UNP G5EI71 ASP 62 ENGINEERED MUTATION SEQADV 8R7D ARG B 89 UNP G5EI71 GLU 89 ENGINEERED MUTATION SEQADV 8R7D ARG D 42 UNP G5EI71 SER 42 ENGINEERED MUTATION SEQADV 8R7D ARG D 52 UNP G5EI71 ASN 52 ENGINEERED MUTATION SEQADV 8R7D ARG D 62 UNP G5EI71 ASP 62 ENGINEERED MUTATION SEQADV 8R7D ARG D 89 UNP G5EI71 GLU 89 ENGINEERED MUTATION SEQRES 1 A 151 MET GLY VAL LEU ASP SER LEU SER ASP MET CYS SER LEU SEQRES 2 A 151 THR GLU THR LYS GLU ALA LEU LYS LEU ARG LYS LYS ARG SEQRES 3 A 151 PRO LEU GLN THR VAL ASN ILE LYS VAL LYS MET ASP CYS SEQRES 4 A 151 GLU GLY CYS GLU ARG ARG VAL LYS ASN ALA VAL LYS SER SEQRES 5 A 151 MET ARG GLY VAL THR SER VAL ALA VAL ASN PRO LYS GLN SEQRES 6 A 151 SER ARG CYS THR VAL THR GLY TYR VAL GLU ALA SER LYS SEQRES 7 A 151 VAL LEU GLU ARG VAL LYS SER THR GLY LYS ALA ALA GLU SEQRES 8 A 151 MET TRP PRO TYR VAL PRO TYR THR MET THR THR TYR PRO SEQRES 9 A 151 TYR VAL GLY GLY ALA TYR ASP LYS LYS ALA PRO ALA GLY SEQRES 10 A 151 PHE VAL ARG GLY ASN PRO ALA ALA MET ALA ASP PRO SER SEQRES 11 A 151 ALA PRO GLU VAL ARG TYR MET THR MET PHE SER ASP GLU SEQRES 12 A 151 ASN VAL ASP SER CYS SER ILE MET SEQRES 1 B 145 MET LYS CYS ASN ASN ILE ILE LEU PRO PHE ALA LEU VAL SEQRES 2 B 145 PHE PHE SER THR THR VAL THR ALA GLY GLY GLY TRP THR SEQRES 3 B 145 ASN LYS GLN PHE TYR ASN ASP LYS GLY GLU ARG GLU GLY SEQRES 4 B 145 SER ILE ARG ILE ARG LYS GLY SER GLU GLY ASP PHE ARG SEQRES 5 B 145 TYR GLY PRO SER TYR PRO GLY GLY PRO ARG ARG MET VAL SEQRES 6 B 145 ARG VAL HIS GLU ASN ASN GLY ASN ILE ARG GLY MET PRO SEQRES 7 B 145 PRO GLY TYR SER LEU GLY PRO ASP HIS GLN ARG ASP LYS SEQRES 8 B 145 SER ASP ARG GLN TYR TYR ASN ARG HIS GLY TYR HIS VAL SEQRES 9 B 145 GLY ASP GLY PRO ALA GLU TYR GLY ASN HIS GLY GLY GLY SEQRES 10 B 145 GLN TRP GLY ASP GLY TYR TYR GLY PRO PRO GLY GLU PHE SEQRES 11 B 145 THR HIS GLU HIS ARG GLU GLN ARG GLU GLU GLY CYS ASN SEQRES 12 B 145 ILE MET SEQRES 1 C 151 MET GLY VAL LEU ASP SER LEU SER ASP MET CYS SER LEU SEQRES 2 C 151 THR GLU THR LYS GLU ALA LEU LYS LEU ARG LYS LYS ARG SEQRES 3 C 151 PRO LEU GLN THR VAL ASN ILE LYS VAL LYS MET ASP CYS SEQRES 4 C 151 GLU GLY CYS GLU ARG ARG VAL LYS ASN ALA VAL LYS SER SEQRES 5 C 151 MET ARG GLY VAL THR SER VAL ALA VAL ASN PRO LYS GLN SEQRES 6 C 151 SER ARG CYS THR VAL THR GLY TYR VAL GLU ALA SER LYS SEQRES 7 C 151 VAL LEU GLU ARG VAL LYS SER THR GLY LYS ALA ALA GLU SEQRES 8 C 151 MET TRP PRO TYR VAL PRO TYR THR MET THR THR TYR PRO SEQRES 9 C 151 TYR VAL GLY GLY ALA TYR ASP LYS LYS ALA PRO ALA GLY SEQRES 10 C 151 PHE VAL ARG GLY ASN PRO ALA ALA MET ALA ASP PRO SER SEQRES 11 C 151 ALA PRO GLU VAL ARG TYR MET THR MET PHE SER ASP GLU SEQRES 12 C 151 ASN VAL ASP SER CYS SER ILE MET SEQRES 1 D 145 MET LYS CYS ASN ASN ILE ILE LEU PRO PHE ALA LEU VAL SEQRES 2 D 145 PHE PHE SER THR THR VAL THR ALA GLY GLY GLY TRP THR SEQRES 3 D 145 ASN LYS GLN PHE TYR ASN ASP LYS GLY GLU ARG GLU GLY SEQRES 4 D 145 SER ILE ARG ILE ARG LYS GLY SER GLU GLY ASP PHE ARG SEQRES 5 D 145 TYR GLY PRO SER TYR PRO GLY GLY PRO ARG ARG MET VAL SEQRES 6 D 145 ARG VAL HIS GLU ASN ASN GLY ASN ILE ARG GLY MET PRO SEQRES 7 D 145 PRO GLY TYR SER LEU GLY PRO ASP HIS GLN ARG ASP LYS SEQRES 8 D 145 SER ASP ARG GLN TYR TYR ASN ARG HIS GLY TYR HIS VAL SEQRES 9 D 145 GLY ASP GLY PRO ALA GLU TYR GLY ASN HIS GLY GLY GLY SEQRES 10 D 145 GLN TRP GLY ASP GLY TYR TYR GLY PRO PRO GLY GLU PHE SEQRES 11 D 145 THR HIS GLU HIS ARG GLU GLN ARG GLU GLU GLY CYS ASN SEQRES 12 D 145 ILE MET FORMUL 5 HOH *43(H2 O) HELIX 1 AA1 GLY A 41 SER A 52 1 12 HELIX 2 AA2 GLU A 75 SER A 85 1 11 HELIX 3 AA3 ASP B 86 GLY B 101 1 16 HELIX 4 AA4 GLU B 110 HIS B 114 5 5 HELIX 5 AA5 GLY C 41 SER C 52 1 12 HELIX 6 AA6 GLU C 75 SER C 85 1 11 HELIX 7 AA7 ASP D 86 GLY D 101 1 16 HELIX 8 AA8 GLU D 110 HIS D 114 5 5 SHEET 1 AA1 7 GLU A 91 MET A 92 0 SHEET 2 AA1 7 GLN A 29 LYS A 34 -1 N LYS A 34 O GLU A 91 SHEET 3 AA1 7 ARG A 67 GLY A 72 -1 O CYS A 68 N ILE A 33 SHEET 4 AA1 7 VAL A 56 ASN A 62 -1 N THR A 57 O THR A 71 SHEET 5 AA1 7 ARG B 37 ARG B 44 -1 O SER B 40 N VAL A 61 SHEET 6 AA1 7 TRP B 25 TYR B 31 -1 N LYS B 28 O ILE B 41 SHEET 7 AA1 7 SER B 82 PRO B 85 -1 O GLY B 84 N GLN B 29 SHEET 1 AA2 3 GLU B 48 PRO B 55 0 SHEET 2 AA2 3 ARG B 62 ASN B 70 -1 O VAL B 65 N PHE B 51 SHEET 3 AA2 3 ASN B 73 ARG B 75 -1 O ASN B 73 N ASN B 70 SHEET 1 AA3 7 GLU C 91 MET C 92 0 SHEET 2 AA3 7 GLN C 29 LYS C 34 -1 N LYS C 34 O GLU C 91 SHEET 3 AA3 7 ARG C 67 GLY C 72 -1 O CYS C 68 N ILE C 33 SHEET 4 AA3 7 VAL C 56 ASN C 62 -1 N THR C 57 O THR C 71 SHEET 5 AA3 7 ARG D 37 ARG D 44 -1 O ARG D 42 N VAL C 59 SHEET 6 AA3 7 TRP D 25 TYR D 31 -1 N LYS D 28 O ILE D 41 SHEET 7 AA3 7 SER D 82 PRO D 85 -1 O GLY D 84 N GLN D 29 SHEET 1 AA4 3 GLU D 48 TYR D 53 0 SHEET 2 AA4 3 ARG D 63 ASN D 70 -1 O ARG D 63 N TYR D 53 SHEET 3 AA4 3 ASN D 73 ARG D 75 -1 O ASN D 73 N ASN D 70 SSBOND 1 CYS A 39 CYS C 39 1555 2565 2.32 CRYST1 66.378 66.804 81.901 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015065 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012210 0.00000