HEADER SUGAR BINDING PROTEIN 28-NOV-23 8R8C TITLE STRUCTURE OF THE N-TERMINAL DOMAIN OF CMA FROM CUCUMIS MELO IN COMPLEX TITLE 2 WITH N-ACETYLGALACTOSAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NIGRIN B-LIKE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUCUMIS MELO; SOURCE 3 ORGANISM_COMMON: MUSKMELON; SOURCE 4 ORGANISM_TAXID: 3656; SOURCE 5 VARIANT: MAKUVA; SOURCE 6 GENE: LOC107992255, 107992255; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: TUNER (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PET40B-TEV; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET40B-TEV-CMA-NTER KEYWDS LECTIN, BETA-TREFOIL, GALACTOSE, N-ACETYLLACTOSAMINE, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.VARROT REVDAT 3 23-OCT-24 8R8C 1 REMARK REVDAT 2 06-MAR-24 8R8C 1 JRNL REVDAT 1 27-DEC-23 8R8C 0 JRNL AUTH J.LUNDSTROM,E.GILLON,V.CHAZALET,N.KEREKES,A.DI MAIO,T.FEIZI, JRNL AUTH 2 Y.LIU,A.VARROT,D.BOJAR JRNL TITL ELUCIDATING THE GLYCAN-BINDING SPECIFICITY AND STRUCTURE OF JRNL TITL 2 CUCUMIS MELO AGGLUTININ, A NEW R-TYPE LECTIN. JRNL REF BEILSTEIN J ORG CHEM V. 20 306 2024 JRNL REFN ISSN 1860-5397 JRNL PMID 38410776 JRNL DOI 10.3762/BJOC.20.31 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.951 REMARK 3 FREE R VALUE TEST SET COUNT : 905 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1288 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 963 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.87100 REMARK 3 B22 (A**2) : 1.35500 REMARK 3 B33 (A**2) : -0.47100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.527 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1043 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 916 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1439 ; 1.893 ; 1.775 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2128 ; 0.669 ; 1.746 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 134 ; 7.209 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 2 ; 4.259 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 147 ;10.821 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 170 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1244 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 216 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 185 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 40 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 528 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 118 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.123 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 12 ; 0.131 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.103 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 530 ; 2.109 ; 1.849 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 530 ; 2.104 ; 1.849 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 666 ; 3.025 ; 3.317 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 667 ; 3.023 ; 3.318 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 513 ; 3.151 ; 2.044 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 514 ; 3.148 ; 2.045 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 773 ; 4.608 ; 3.628 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 774 ; 4.605 ; 3.628 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8R8C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1292134908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.13 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18279 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 35.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DIAMOND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG SMEAR MEDIUM 0.1M MES PH 6.5 5 REMARK 280 MM OF CACL2, MGCL2, CSCL2, CDCL2, NICL2 AND ZINC ACETATE AND REMARK 280 GALNAC, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 10.75486 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.80116 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 10.75486 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 46.80116 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 456 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 5 SD CE REMARK 470 ARG A 8 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 83 OD2 ASP A 92 4646 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 112 31.09 70.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 11 NE2 REMARK 620 2 HIS A 66 NE2 13.2 REMARK 620 3 ASP A 132 OXT 90.9 83.4 REMARK 620 4 HOH A 316 O 88.1 99.6 96.3 REMARK 620 5 HOH A 398 O 89.8 79.0 89.4 174.0 REMARK 620 6 HOH A 404 O 91.8 99.2 177.2 84.2 90.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 30 NE2 REMARK 620 2 ASP A 75 OD2 91.5 REMARK 620 3 HOH A 352 O 92.3 92.2 REMARK 620 4 HOH A 393 O 92.5 88.3 175.2 REMARK 620 5 HOH A 420 O 178.2 90.2 88.1 87.1 REMARK 620 6 HOH A 427 O 94.3 174.1 86.2 92.9 84.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 83 OD1 REMARK 620 2 ASN A 83 ND2 56.3 REMARK 620 3 ASP A 92 OD2 38.1 86.6 REMARK 620 4 THR A 94 OG1 32.4 81.3 5.8 REMARK 620 5 HOH A 301 O 47.1 103.2 32.9 34.1 REMARK 620 6 HOH A 366 O 85.2 94.3 57.1 60.2 84.4 REMARK 620 7 HOH A 436 O 92.2 80.7 122.5 118.9 96.9 175.0 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8R8A RELATED DB: PDB REMARK 900 8R8A CONTAINE THE SAME PROTEIN BUT COMPLEXED WITH LACNAC DBREF1 8R8C A 7 132 UNP A0A1S4E5V9_CUCME DBREF2 8R8C A A0A1S4E5V9 34 159 SEQADV 8R8C GLY A 3 UNP A0A1S4E5V EXPRESSION TAG SEQADV 8R8C ALA A 4 UNP A0A1S4E5V EXPRESSION TAG SEQADV 8R8C MET A 5 UNP A0A1S4E5V EXPRESSION TAG SEQADV 8R8C VAL A 6 UNP A0A1S4E5V EXPRESSION TAG SEQRES 1 A 130 GLY ALA MET VAL SER ARG SER THR HIS LEU VAL GLY GLN SEQRES 2 A 130 ASP GLY LEU CYS LEU ASP VAL ILE GLY GLY TYR SER ASP SEQRES 3 A 130 ASN HIS VAL PRO THR GLN LEU TRP PRO CYS GLY PRO GLN SEQRES 4 A 130 ASN ASN GLN LEU TRP THR ILE GLN ALA ASP GLY THR ILE SEQRES 5 A 130 ARG THR MET GLY LYS CYS LEU VAL PRO ASN GLY HIS ASP SEQRES 6 A 130 PRO GLY SER TYR THR MET ILE ASP ASP CYS ASN LYS ALA SEQRES 7 A 130 ASP PRO ASN ASP LYS THR TRP LYS LEU TYR PRO ASP GLY SEQRES 8 A 130 THR LEU THR HIS VAL ARG SER SER LEU VAL LEU THR SER SEQRES 9 A 130 GLN GLY THR GLY ALA TYR ALA ILE THR THR ILE GLU THR SEQRES 10 A 130 ASN THR SER ALA PRO THR GLN SER TRP GLY THR ALA ASP HET CD A 201 1 HET CD A 202 1 HET CD A 203 1 HET NGA A 204 15 HET A2G A 205 15 HETNAM CD CADMIUM ION HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE FORMUL 2 CD 3(CD 2+) FORMUL 5 NGA C8 H15 N O6 FORMUL 6 A2G C8 H15 N O6 FORMUL 7 HOH *171(H2 O) HELIX 1 AA1 GLY A 14 LEU A 18 5 5 HELIX 2 AA2 GLY A 24 TYR A 26 5 3 HELIX 3 AA3 GLN A 41 LEU A 45 5 5 HELIX 4 AA4 ASP A 81 THR A 86 1 6 HELIX 5 AA5 ALA A 123 SER A 127 5 5 SHEET 1 AA1 6 THR A 72 ASP A 75 0 SHEET 2 AA1 6 LYS A 59 PRO A 63 -1 N CYS A 60 O ASP A 75 SHEET 3 AA1 6 ILE A 54 THR A 56 -1 N ILE A 54 O LEU A 61 SHEET 4 AA1 6 TRP A 46 ILE A 48 -1 N THR A 47 O ARG A 55 SHEET 5 AA1 6 ARG A 8 VAL A 13 -1 N THR A 10 O TRP A 46 SHEET 6 AA1 6 GLY A 129 ALA A 131 -1 O GLY A 129 N VAL A 13 SHEET 1 AA2 2 CYS A 19 VAL A 22 0 SHEET 2 AA2 2 THR A 33 TRP A 36 -1 O TRP A 36 N CYS A 19 SHEET 1 AA3 2 TRP A 87 LEU A 89 0 SHEET 2 AA3 2 LEU A 95 HIS A 97 -1 O THR A 96 N LYS A 88 SHEET 1 AA4 2 VAL A 103 THR A 105 0 SHEET 2 AA4 2 THR A 116 GLU A 118 -1 O THR A 116 N THR A 105 SSBOND 1 CYS A 19 CYS A 38 1555 1555 2.06 SSBOND 2 CYS A 60 CYS A 77 1555 1555 2.06 LINK C1 NGA A 204 O1 A2G A 205 1555 1555 1.26 LINK C1 NGA A 204 O5 A2G A 205 1555 1555 1.45 LINK C3 NGA A 204 O3 A2G A 205 1555 1555 1.42 LINK C4 NGA A 204 O4 A2G A 205 1555 1555 1.41 LINK C5 NGA A 204 O5 A2G A 205 1555 1555 1.49 LINK C6 NGA A 204 O6 A2G A 205 1555 1555 1.49 LINK C7 NGA A 204 O7 A2G A 205 1555 1555 1.27 LINK O1 NGA A 204 C1 A2G A 205 1555 1555 1.33 LINK O3 NGA A 204 C3 A2G A 205 1555 1555 1.43 LINK O4 NGA A 204 C4 A2G A 205 1555 1555 1.45 LINK O5 NGA A 204 C1 A2G A 205 1555 1555 1.40 LINK O5 NGA A 204 C5 A2G A 205 1555 1555 1.40 LINK O6 NGA A 204 C6 A2G A 205 1555 1555 1.42 LINK O7 NGA A 204 C7 A2G A 205 1555 1555 1.23 LINK NE2 HIS A 11 CD CD A 201 1555 1555 2.11 LINK NE2 HIS A 30 CD CD A 202 1555 1555 2.09 LINK NE2 HIS A 66 CD CD A 201 1555 1655 2.11 LINK OD2 ASP A 75 CD CD A 202 1555 1555 2.10 LINK OD1AASN A 83 CD CD A 203 1555 1555 2.16 LINK ND2AASN A 83 CD CD A 203 1555 1555 2.56 LINK OD2 ASP A 92 CD CD A 203 1555 4656 2.14 LINK OG1 THR A 94 CD CD A 203 1555 4656 2.31 LINK OXT ASP A 132 CD CD A 201 1555 1555 2.10 LINK CD CD A 201 O HOH A 316 1555 1455 1.98 LINK CD CD A 201 O HOH A 398 1555 1555 2.05 LINK CD CD A 201 O HOH A 404 1555 1455 2.12 LINK CD CD A 202 O HOH A 352 1555 1555 1.99 LINK CD CD A 202 O HOH A 393 1555 2656 2.07 LINK CD CD A 202 O HOH A 420 1555 1555 2.19 LINK CD CD A 202 O HOH A 427 1555 1555 2.14 LINK CD CD A 203 O HOH A 301 1555 1555 2.26 LINK CD CD A 203 O HOH A 366 1555 4646 2.36 LINK CD CD A 203 O HOH A 436 1555 1555 2.53 CRYST1 36.613 36.860 94.813 90.00 99.17 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027313 0.000000 0.004407 0.00000 SCALE2 0.000000 0.027130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010683 0.00000