HEADER IMMUNE SYSTEM 01-DEC-23 8RAL TITLE CL3E PEPTIDE BOUND TO THE I-AB MURINE MHC CLASS II RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-B ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: V76C MUTATION TO CREATE CYS TRAP WITH PEPTIDE; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A BETA CHAIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: N-TERMINAL CL3E PEPTIDE (CHAIN C IDENTIFIER) FUSED COMPND 11 THROUGH G-S LINKER; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: CL3E PEPTIDE; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: C-TERMINAL CYS FOR CYS TRAP LINKAGE WITH I-AB ALPHA COMPND 17 CHAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-AA; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: H2-AB1, H2-IABETA; SOURCE 13 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630; SOURCE 18 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS MHC CLASS II, RECEPTOR, DIABETES, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR E.ERAUSQUIN,A.URDICIAIN,P.SERRA,P.SANTAMARIA,J.LOPEZ-SAGASETA REVDAT 2 27-NOV-24 8RAL 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 HETSYN FORMUL HELIX SHEET REVDAT 2 3 1 SSBOND LINK CRYST1 ATOM REVDAT 1 06-NOV-24 8RAL 0 JRNL AUTH J.LOPEZ-SAGASETA,E.ERAUSQUIN,A.URDICIAIN,P.SERRA, JRNL AUTH 2 P.SANTAMARIA JRNL TITL CL3E PEPTIDE BOUND TO THE I-AB MURINE MHC CLASS II RECEPTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 30056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.974 REMARK 3 FREE R VALUE TEST SET COUNT : 1495 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2100 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2816 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.84400 REMARK 3 B22 (A**2) : -6.06300 REMARK 3 B33 (A**2) : -0.78100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.198 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.195 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.318 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2969 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2545 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4051 ; 1.688 ; 1.818 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5833 ; 0.588 ; 1.734 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 359 ; 7.970 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 13 ; 6.054 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 379 ;13.107 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 456 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3475 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 695 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 581 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 68 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1435 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 179 ; 0.211 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1459 ; 4.307 ; 5.077 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1459 ; 4.304 ; 5.077 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1809 ; 5.897 ; 9.089 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1810 ; 5.896 ; 9.089 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1510 ; 5.195 ; 5.344 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1511 ; 5.193 ; 5.345 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2242 ; 7.083 ; 9.678 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2243 ; 7.082 ; 9.678 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8RAL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1292134896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979181 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL-CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30076 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.93600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1 M SODIUM ACETATE PH 5.0, 20% W/V PEG 6000, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.01600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.51850 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.01600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.51850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A -1 REMARK 465 ASP A 0 REMARK 465 ASP A 1 REMARK 465 ILE A 2 REMARK 465 PRO A 182 REMARK 465 GLU A 183 REMARK 465 ILE A 184 REMARK 465 PRO A 185 REMARK 465 ALA A 186 REMARK 465 PRO A 187 REMARK 465 MET A 188 REMARK 465 SER A 189 REMARK 465 GLU A 190 REMARK 465 LEU A 191 REMARK 465 THR A 192 REMARK 465 GLU A 193 REMARK 465 GLY B -24 REMARK 465 LEU B -23 REMARK 465 TYR B -22 REMARK 465 LEU B -21 REMARK 465 GLU B -20 REMARK 465 ALA B -19 REMARK 465 VAL B -18 REMARK 465 PRO B -17 REMARK 465 LEU B -16 REMARK 465 GLN B -15 REMARK 465 VAL B -14 REMARK 465 GLY B -13 REMARK 465 CYS B -12 REMARK 465 GLY B -11 REMARK 465 GLY B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 GLY B -6 REMARK 465 SER B -5 REMARK 465 GLY B -4 REMARK 465 GLY B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLY B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 ARG B 106 REMARK 465 THR B 107 REMARK 465 GLU B 108 REMARK 465 ALA B 109 REMARK 465 LEU B 110 REMARK 465 ASN B 111 REMARK 465 HIS B 112 REMARK 465 HIS B 113 REMARK 465 PRO B 166 REMARK 465 ARG B 167 REMARK 465 ARG B 168 REMARK 465 GLY B 169 REMARK 465 ARG B 190 REMARK 465 ALA B 191 REMARK 465 GLN B 192 REMARK 465 SER B 193 REMARK 465 GLU B 194 REMARK 465 SER B 195 REMARK 465 ALA B 196 REMARK 465 TRP B 197 REMARK 465 SER B 198 REMARK 465 LYS B 199 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 ILE A 21 CD1 REMARK 470 LYS A 40 CD CE NZ REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 GLN A 63 CG CD OE1 NE2 REMARK 470 SER A 81 OG REMARK 470 THR A 85 CG2 REMARK 470 LEU A 101 CD1 CD2 REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 SER A 129 OG REMARK 470 VAL A 130 CG1 CG2 REMARK 470 ASP A 132 CB CG OD1 OD2 REMARK 470 TYR A 135 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 143 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 159 CG OD1 OD2 REMARK 470 ASP A 160 OD1 OD2 REMARK 470 ILE A 162 CG1 CG2 CD1 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 VAL A 167 CG1 CG2 REMARK 470 GLU A 168 CD OE1 OE2 REMARK 470 LEU A 177 CG CD1 CD2 REMARK 470 HIS A 179 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 GLU B 4 CD OE1 OE2 REMARK 470 ARG B 5 CG CD NE CZ NH1 NH2 REMARK 470 THR B 18 CG2 REMARK 470 ASN B 19 CG OD1 ND2 REMARK 470 GLN B 22 CG CD OE1 NE2 REMARK 470 ARG B 23 CD NE CZ NH1 NH2 REMARK 470 LEU B 53 CD1 CD2 REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 GLU B 69 CG CD OE1 OE2 REMARK 470 ARG B 93 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 100 CG1 CG2 REMARK 470 LEU B 104 CB CG CD1 CD2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 LYS B 129 CE NZ REMARK 470 ARG B 134 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 137 CG CD OE1 NE2 REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 470 SER B 144 OG REMARK 470 GLU B 163 CG CD OE1 OE2 REMARK 470 MET B 164 CG SD CE REMARK 470 THR B 165 OG1 CG2 REMARK 470 GLU B 170 CG CD OE1 OE2 REMARK 470 VAL B 171 CG1 CG2 REMARK 470 LYS B 182 CG CD CE NZ REMARK 470 ILE B 185 CD1 REMARK 470 VAL B 187 CG1 REMARK 470 GLU B 188 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU B 170 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 125 OH TYR A 163 2.09 REMARK 500 OH TYR A 15 OD1 ASP A 20 2.12 REMARK 500 O2 MAN D 4 O5 MAN D 5 2.13 REMARK 500 OE2 GLU A 42 O HOH A 301 2.15 REMARK 500 O HOH A 306 O HOH A 359 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VHF B 84 C GLY B 85 N 0.140 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VHF B 84 O - C - N ANGL. DEV. = -17.4 DEGREES REMARK 500 GLU B 170 CB - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 GLU B 170 N - CA - CB ANGL. DEV. = -30.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 66.20 -114.33 REMARK 500 SER A 127 4.89 82.41 REMARK 500 ARG B 34 -2.54 76.16 REMARK 500 VAL B 78 -74.80 -109.64 REMARK 500 THR B 90 -93.54 -115.01 REMARK 500 ASN B 135 60.33 38.47 REMARK 500 MET B 164 -93.48 -174.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 80 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VHF B 84 24.37 REMARK 500 REMARK 500 REMARK: NULL DBREF 8RAL A -1 193 UNP P14434 HA2B_MOUSE 24 218 DBREF 8RAL B 1 199 UNP P14483 HB2A_MOUSE 28 226 DBREF 8RAL C -1 11 PDB 8RAL 8RAL -1 11 SEQADV 8RAL CYS A 74 UNP P14434 VAL 99 ENGINEERED MUTATION SEQADV 8RAL GLY B -24 UNP P14483 EXPRESSION TAG SEQADV 8RAL LEU B -23 UNP P14483 EXPRESSION TAG SEQADV 8RAL TYR B -22 UNP P14483 EXPRESSION TAG SEQADV 8RAL LEU B -21 UNP P14483 EXPRESSION TAG SEQADV 8RAL GLU B -20 UNP P14483 EXPRESSION TAG SEQADV 8RAL ALA B -19 UNP P14483 EXPRESSION TAG SEQADV 8RAL VAL B -18 UNP P14483 EXPRESSION TAG SEQADV 8RAL PRO B -17 UNP P14483 EXPRESSION TAG SEQADV 8RAL LEU B -16 UNP P14483 EXPRESSION TAG SEQADV 8RAL GLN B -15 UNP P14483 EXPRESSION TAG SEQADV 8RAL VAL B -14 UNP P14483 EXPRESSION TAG SEQADV 8RAL GLY B -13 UNP P14483 EXPRESSION TAG SEQADV 8RAL CYS B -12 UNP P14483 EXPRESSION TAG SEQADV 8RAL GLY B -11 UNP P14483 EXPRESSION TAG SEQADV 8RAL GLY B -10 UNP P14483 EXPRESSION TAG SEQADV 8RAL GLY B -9 UNP P14483 EXPRESSION TAG SEQADV 8RAL SER B -8 UNP P14483 EXPRESSION TAG SEQADV 8RAL GLY B -7 UNP P14483 EXPRESSION TAG SEQADV 8RAL GLY B -6 UNP P14483 EXPRESSION TAG SEQADV 8RAL SER B -5 UNP P14483 EXPRESSION TAG SEQADV 8RAL GLY B -4 UNP P14483 EXPRESSION TAG SEQADV 8RAL GLY B -3 UNP P14483 EXPRESSION TAG SEQADV 8RAL GLY B -2 UNP P14483 EXPRESSION TAG SEQADV 8RAL GLY B -1 UNP P14483 EXPRESSION TAG SEQADV 8RAL SER B 0 UNP P14483 EXPRESSION TAG SEQRES 1 A 195 GLU ASP ASP ILE GLU ALA ASP HIS VAL GLY THR TYR GLY SEQRES 2 A 195 ILE SER VAL TYR GLN SER PRO GLY ASP ILE GLY GLN TYR SEQRES 3 A 195 THR PHE GLU PHE ASP GLY ASP GLU LEU PHE TYR VAL ASP SEQRES 4 A 195 LEU ASP LYS LYS GLU THR VAL TRP MET LEU PRO GLU PHE SEQRES 5 A 195 GLY GLN LEU ALA SER PHE ASP PRO GLN GLY GLY LEU GLN SEQRES 6 A 195 ASN ILE ALA VAL VAL LYS HIS ASN LEU GLY CYS LEU THR SEQRES 7 A 195 LYS ARG SER ASN SER THR PRO ALA THR ASN GLU ALA PRO SEQRES 8 A 195 GLN ALA THR VAL PHE PRO LYS SER PRO VAL LEU LEU GLY SEQRES 9 A 195 GLN PRO ASN THR LEU ILE CYS PHE VAL ASP ASN ILE PHE SEQRES 10 A 195 PRO PRO VAL ILE ASN ILE THR TRP LEU ARG ASN SER LYS SEQRES 11 A 195 SER VAL ALA ASP GLY VAL TYR GLU THR SER PHE PHE VAL SEQRES 12 A 195 ASN ARG ASP TYR SER PHE HIS LYS LEU SER TYR LEU THR SEQRES 13 A 195 PHE ILE PRO SER ASP ASP ASP ILE TYR ASP CYS LYS VAL SEQRES 14 A 195 GLU HIS TRP GLY LEU GLU GLU PRO VAL LEU LYS HIS TRP SEQRES 15 A 195 GLU PRO GLU ILE PRO ALA PRO MET SER GLU LEU THR GLU SEQRES 1 B 224 GLY LEU TYR LEU GLU ALA VAL PRO LEU GLN VAL GLY CYS SEQRES 2 B 224 GLY GLY GLY SER GLY GLY SER GLY GLY GLY GLY SER GLY SEQRES 3 B 224 ASP SER GLU ARG HIS PHE VAL TYR GLN PHE MET GLY GLU SEQRES 4 B 224 CYS TYR PHE THR ASN GLY THR GLN ARG ILE ARG TYR VAL SEQRES 5 B 224 THR ARG TYR ILE TYR ASN ARG GLU GLU TYR VAL ARG TYR SEQRES 6 B 224 ASP SER ASP VAL GLY GLU HIS ARG ALA VAL THR GLU LEU SEQRES 7 B 224 GLY ARG PRO ASP ALA GLU TYR TRP ASN SER GLN PRO GLU SEQRES 8 B 224 ILE LEU GLU ARG THR ARG ALA GLU LEU ASP THR VAL CYS SEQRES 9 B 224 ARG HIS ASN TYR VHF GLY PRO GLU THR HIS THR SER LEU SEQRES 10 B 224 ARG ARG LEU GLU GLN PRO ASN VAL VAL ILE SER LEU SER SEQRES 11 B 224 ARG THR GLU ALA LEU ASN HIS HIS ASN THR LEU VAL CYS SEQRES 12 B 224 SER VAL THR ASP PHE TYR PRO ALA LYS ILE LYS VAL ARG SEQRES 13 B 224 TRP PHE ARG ASN GLY GLN GLU GLU THR VAL GLY VAL SER SEQRES 14 B 224 SER THR GLN LEU ILE ARG ASN GLY ASP TRP THR PHE GLN SEQRES 15 B 224 VAL LEU VAL MET LEU GLU MET THR PRO ARG ARG GLY GLU SEQRES 16 B 224 VAL TYR THR CYS HIS VAL GLU HIS PRO SER LEU LYS SER SEQRES 17 B 224 PRO ILE THR VAL GLU TRP ARG ALA GLN SER GLU SER ALA SEQRES 18 B 224 TRP SER LYS SEQRES 1 C 13 GLY LEU TYR LEU GLU ALA VAL PRO LEU GLN VAL GLY CYS MODRES 8RAL VHF B 84 GLU MODIFIED RESIDUE HET VHF B 84 13 HET NAG D 1 14 HET NAG D 2 14 HET MAN D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET EDO A 201 4 HET EDO B 201 4 HETNAM VHF (2~{S})-2-AZANYL-5-OXIDANYLIDENE-5-PHOSPHONOOXY- HETNAM 2 VHF PENTANOIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 VHF C5 H10 N O7 P FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 4 MAN 3(C6 H12 O6) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *128(H2 O) HELIX 1 AA1 LEU A 47 LEU A 53 5 7 HELIX 2 AA2 PRO A 58 SER A 79 1 22 HELIX 3 AA3 THR B 51 LEU B 53 5 3 HELIX 4 AA4 GLY B 54 GLN B 64 1 11 HELIX 5 AA5 GLN B 64 VAL B 78 1 15 HELIX 6 AA6 VAL B 78 GLY B 85 1 8 HELIX 7 AA7 GLY B 85 THR B 90 1 6 SHEET 1 AA1 8 GLU A 42 TRP A 45 0 SHEET 2 AA1 8 ASP A 31 ASP A 37 -1 N ASP A 37 O GLU A 42 SHEET 3 AA1 8 ILE A 21 PHE A 28 -1 N PHE A 28 O ASP A 31 SHEET 4 AA1 8 HIS A 6 SER A 17 -1 N THR A 9 O GLU A 27 SHEET 5 AA1 8 PHE B 7 THR B 18 -1 O PHE B 7 N SER A 17 SHEET 6 AA1 8 ARG B 23 TYR B 32 -1 O ILE B 31 N GLN B 10 SHEET 7 AA1 8 GLU B 35 ASP B 41 -1 O GLU B 35 N TYR B 32 SHEET 8 AA1 8 HIS B 47 ALA B 49 -1 O ARG B 48 N ARG B 39 SHEET 1 AA2 4 GLN A 90 PRO A 95 0 SHEET 2 AA2 4 ASN A 105 ILE A 114 -1 O ASP A 112 N GLN A 90 SHEET 3 AA2 4 PHE A 147 PHE A 155 -1 O SER A 151 N CYS A 109 SHEET 4 AA2 4 VAL A 134 GLU A 136 -1 N TYR A 135 O TYR A 152 SHEET 1 AA3 4 GLN A 90 PRO A 95 0 SHEET 2 AA3 4 ASN A 105 ILE A 114 -1 O ASP A 112 N GLN A 90 SHEET 3 AA3 4 PHE A 147 PHE A 155 -1 O SER A 151 N CYS A 109 SHEET 4 AA3 4 PHE A 140 VAL A 141 -1 N PHE A 140 O HIS A 148 SHEET 1 AA4 4 LYS A 128 SER A 129 0 SHEET 2 AA4 4 ASN A 120 ARG A 125 -1 N ARG A 125 O LYS A 128 SHEET 3 AA4 4 TYR A 163 GLU A 168 -1 O ASP A 164 N LEU A 124 SHEET 4 AA4 4 VAL A 176 TRP A 180 -1 O LYS A 178 N CYS A 165 SHEET 1 AA5 4 ASN B 99 LEU B 104 0 SHEET 2 AA5 4 THR B 115 PHE B 123 -1 O THR B 121 N ASN B 99 SHEET 3 AA5 4 PHE B 156 GLU B 163 -1 O LEU B 162 N LEU B 116 SHEET 4 AA5 4 VAL B 143 SER B 145 -1 N SER B 144 O MET B 161 SHEET 1 AA6 4 ASN B 99 LEU B 104 0 SHEET 2 AA6 4 THR B 115 PHE B 123 -1 O THR B 121 N ASN B 99 SHEET 3 AA6 4 PHE B 156 GLU B 163 -1 O LEU B 162 N LEU B 116 SHEET 4 AA6 4 ILE B 149 ARG B 150 -1 N ILE B 149 O GLN B 157 SHEET 1 AA7 4 GLN B 137 GLU B 139 0 SHEET 2 AA7 4 LYS B 129 ARG B 134 -1 N ARG B 134 O GLN B 137 SHEET 3 AA7 4 TYR B 172 GLU B 177 -1 O GLU B 177 N LYS B 129 SHEET 4 AA7 4 ILE B 185 TRP B 189 -1 O ILE B 185 N VAL B 176 SSBOND 1 CYS A 74 CYS C 11 1555 1555 2.07 SSBOND 2 CYS A 109 CYS A 165 1555 1555 2.01 SSBOND 3 CYS B 15 CYS B 79 1555 1555 2.03 SSBOND 4 CYS B 118 CYS B 174 1555 1555 1.99 LINK ND2 ASN A 120 C1 NAG D 1 1555 1555 1.47 LINK C TYR B 83 N VHF B 84 1555 1555 1.33 LINK C VHF B 84 N GLY B 85 1555 1555 1.48 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.40 LINK O4 NAG D 2 C1 MAN D 3 1555 1555 1.41 LINK O3 MAN D 3 C1 MAN D 4 1555 1555 1.42 LINK O2 MAN D 4 C1 MAN D 5 1555 1555 1.39 CISPEP 1 SER A 17 PRO A 18 0 -8.53 CISPEP 2 PHE A 115 PRO A 116 0 1.19 CISPEP 3 TYR B 124 PRO B 125 0 -3.14 CRYST1 50.057 76.032 133.037 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019977 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007517 0.00000