data_8RBY # _entry.id 8RBY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8RBY pdb_00008rby 10.2210/pdb8rby/pdb WWPDB D_1292133807 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-12-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8RBY _pdbx_database_status.recvd_initial_deposition_date 2023-12-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email jcasasnovas@cnb.csic.es _pdbx_contact_author.name_first Jose _pdbx_contact_author.name_last Casasnovas _pdbx_contact_author.name_mi M _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2873-6410 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Casasnovas, J.M.' 1 0000-0002-2873-6410 'Fernandez, L.A.' 2 0000-0001-5920-0638 'Silva, K.' 3 ? # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? ? ? ? primary 'To Be Published' ? 0353 ? ? ? ? ? ? ? 'The crystal structure of the SARS-CoV-2 receptor binding domain in complex with the neutralizing nanobody 1.26' ? ? ? ? ? ? ? ? ? ? ? ? ? CH ? ? 1 'Front Immunol' ? ? 1664-3224 ? ? 13 ? 863831 863831 ;Nanobodies Protecting From Lethal SARS-CoV-2 Infection Target Receptor Binding Epitopes Preserved in Virus Variants Other Than Omicron. ; 2022 ? 10.3389/fimmu.2022.863831 35547740 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Casasnovas, J.M.' 1 0000-0002-2873-6410 primary 'Fernandez, L.A.' 2 0000-0001-5920-0638 primary 'Silva, K.' 3 ? 1 'Casasnovas, J.M.' 4 ? 1 'Margolles, Y.' 5 ? 1 'Noriega, M.A.' 6 ? 1 'Guzman, M.' 7 ? 1 'Arranz, R.' 8 ? 1 'Melero, R.' 9 ? 1 'Casanova, M.' 10 ? 1 'Corbera, J.A.' 11 ? 1 'Jimenez-de-Oya, N.' 12 ? 1 'Gastaminza, P.' 13 ? 1 'Garaigorta, U.' 14 ? 1 'Saiz, J.C.' 15 ? 1 'Martin-Acebes, M.A.' 16 ? 1 'Fernandez, L.A.' 17 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike protein S1' 22726.562 1 ? ? ? ? 2 polymer man 'Camel-derived nanobody 1.26' 13225.771 1 ? ? ? ? 3 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 4 non-polymer syn '3[N-MORPHOLINO]PROPANE SULFONIC ACID' 209.263 1 ? ? ? ? 5 water nat water 18.015 224 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ IAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCY FPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKLVPR ; ;GSITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ IAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCY FPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKLVPR ; A ? 2 'polypeptide(L)' no no ;QVQLVESGGGLVQAGGSLRLSCAATGYTWSSVCMGWFRQAPGKEREGVAGIPSGRNRPYYADSVKGRFTISQDNAKNAVF LLMNSLKPEDTAIYYCAPCSAPHDPEYNYWGQGTQVTVSSALV ; ;QVQLVESGGGLVQAGGSLRLSCAATGYTWSSVCMGWFRQAPGKEREGVAGIPSGRNRPYYADSVKGRFTISQDNAKNAVF LLMNSLKPEDTAIYYCAPCSAPHDPEYNYWGQGTQVTVSSALV ; B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 '3[N-MORPHOLINO]PROPANE SULFONIC ACID' MPO 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ILE n 1 4 THR n 1 5 ASN n 1 6 LEU n 1 7 CYS n 1 8 PRO n 1 9 PHE n 1 10 GLY n 1 11 GLU n 1 12 VAL n 1 13 PHE n 1 14 ASN n 1 15 ALA n 1 16 THR n 1 17 ARG n 1 18 PHE n 1 19 ALA n 1 20 SER n 1 21 VAL n 1 22 TYR n 1 23 ALA n 1 24 TRP n 1 25 ASN n 1 26 ARG n 1 27 LYS n 1 28 ARG n 1 29 ILE n 1 30 SER n 1 31 ASN n 1 32 CYS n 1 33 VAL n 1 34 ALA n 1 35 ASP n 1 36 TYR n 1 37 SER n 1 38 VAL n 1 39 LEU n 1 40 TYR n 1 41 ASN n 1 42 SER n 1 43 ALA n 1 44 SER n 1 45 PHE n 1 46 SER n 1 47 THR n 1 48 PHE n 1 49 LYS n 1 50 CYS n 1 51 TYR n 1 52 GLY n 1 53 VAL n 1 54 SER n 1 55 PRO n 1 56 THR n 1 57 LYS n 1 58 LEU n 1 59 ASN n 1 60 ASP n 1 61 LEU n 1 62 CYS n 1 63 PHE n 1 64 THR n 1 65 ASN n 1 66 VAL n 1 67 TYR n 1 68 ALA n 1 69 ASP n 1 70 SER n 1 71 PHE n 1 72 VAL n 1 73 ILE n 1 74 ARG n 1 75 GLY n 1 76 ASP n 1 77 GLU n 1 78 VAL n 1 79 ARG n 1 80 GLN n 1 81 ILE n 1 82 ALA n 1 83 PRO n 1 84 GLY n 1 85 GLN n 1 86 THR n 1 87 GLY n 1 88 LYS n 1 89 ILE n 1 90 ALA n 1 91 ASP n 1 92 TYR n 1 93 ASN n 1 94 TYR n 1 95 LYS n 1 96 LEU n 1 97 PRO n 1 98 ASP n 1 99 ASP n 1 100 PHE n 1 101 THR n 1 102 GLY n 1 103 CYS n 1 104 VAL n 1 105 ILE n 1 106 ALA n 1 107 TRP n 1 108 ASN n 1 109 SER n 1 110 ASN n 1 111 ASN n 1 112 LEU n 1 113 ASP n 1 114 SER n 1 115 LYS n 1 116 VAL n 1 117 GLY n 1 118 GLY n 1 119 ASN n 1 120 TYR n 1 121 ASN n 1 122 TYR n 1 123 LEU n 1 124 TYR n 1 125 ARG n 1 126 LEU n 1 127 PHE n 1 128 ARG n 1 129 LYS n 1 130 SER n 1 131 ASN n 1 132 LEU n 1 133 LYS n 1 134 PRO n 1 135 PHE n 1 136 GLU n 1 137 ARG n 1 138 ASP n 1 139 ILE n 1 140 SER n 1 141 THR n 1 142 GLU n 1 143 ILE n 1 144 TYR n 1 145 GLN n 1 146 ALA n 1 147 GLY n 1 148 SER n 1 149 THR n 1 150 PRO n 1 151 CYS n 1 152 ASN n 1 153 GLY n 1 154 VAL n 1 155 GLU n 1 156 GLY n 1 157 PHE n 1 158 ASN n 1 159 CYS n 1 160 TYR n 1 161 PHE n 1 162 PRO n 1 163 LEU n 1 164 GLN n 1 165 SER n 1 166 TYR n 1 167 GLY n 1 168 PHE n 1 169 GLN n 1 170 PRO n 1 171 THR n 1 172 ASN n 1 173 GLY n 1 174 VAL n 1 175 GLY n 1 176 TYR n 1 177 GLN n 1 178 PRO n 1 179 TYR n 1 180 ARG n 1 181 VAL n 1 182 VAL n 1 183 VAL n 1 184 LEU n 1 185 SER n 1 186 PHE n 1 187 GLU n 1 188 LEU n 1 189 LEU n 1 190 HIS n 1 191 ALA n 1 192 PRO n 1 193 ALA n 1 194 THR n 1 195 VAL n 1 196 CYS n 1 197 GLY n 1 198 PRO n 1 199 LYS n 1 200 LEU n 1 201 VAL n 1 202 PRO n 1 203 ARG n 2 1 GLN n 2 2 VAL n 2 3 GLN n 2 4 LEU n 2 5 VAL n 2 6 GLU n 2 7 SER n 2 8 GLY n 2 9 GLY n 2 10 GLY n 2 11 LEU n 2 12 VAL n 2 13 GLN n 2 14 ALA n 2 15 GLY n 2 16 GLY n 2 17 SER n 2 18 LEU n 2 19 ARG n 2 20 LEU n 2 21 SER n 2 22 CYS n 2 23 ALA n 2 24 ALA n 2 25 THR n 2 26 GLY n 2 27 TYR n 2 28 THR n 2 29 TRP n 2 30 SER n 2 31 SER n 2 32 VAL n 2 33 CYS n 2 34 MET n 2 35 GLY n 2 36 TRP n 2 37 PHE n 2 38 ARG n 2 39 GLN n 2 40 ALA n 2 41 PRO n 2 42 GLY n 2 43 LYS n 2 44 GLU n 2 45 ARG n 2 46 GLU n 2 47 GLY n 2 48 VAL n 2 49 ALA n 2 50 GLY n 2 51 ILE n 2 52 PRO n 2 53 SER n 2 54 GLY n 2 55 ARG n 2 56 ASN n 2 57 ARG n 2 58 PRO n 2 59 TYR n 2 60 TYR n 2 61 ALA n 2 62 ASP n 2 63 SER n 2 64 VAL n 2 65 LYS n 2 66 GLY n 2 67 ARG n 2 68 PHE n 2 69 THR n 2 70 ILE n 2 71 SER n 2 72 GLN n 2 73 ASP n 2 74 ASN n 2 75 ALA n 2 76 LYS n 2 77 ASN n 2 78 ALA n 2 79 VAL n 2 80 PHE n 2 81 LEU n 2 82 LEU n 2 83 MET n 2 84 ASN n 2 85 SER n 2 86 LEU n 2 87 LYS n 2 88 PRO n 2 89 GLU n 2 90 ASP n 2 91 THR n 2 92 ALA n 2 93 ILE n 2 94 TYR n 2 95 TYR n 2 96 CYS n 2 97 ALA n 2 98 PRO n 2 99 CYS n 2 100 SER n 2 101 ALA n 2 102 PRO n 2 103 HIS n 2 104 ASP n 2 105 PRO n 2 106 GLU n 2 107 TYR n 2 108 ASN n 2 109 TYR n 2 110 TRP n 2 111 GLY n 2 112 GLN n 2 113 GLY n 2 114 THR n 2 115 GLN n 2 116 VAL n 2 117 THR n 2 118 VAL n 2 119 SER n 2 120 SER n 2 121 ALA n 2 122 LEU n 2 123 VAL n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 203 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? Kidney ? Embryo ? ? CRL-1573 HEK293 ? ? Epithelial ? ? plasmid pcDNA ? ? Flag-MCS-pcDNA3.1 ? ? 2 1 sample 'Biological sequence' 1 123 ? ? ? ? ? ? ? ? ? 'Camelus dromedarius' 9838 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? Kidney ? Embryo ? ? CRL-1573 HEK293 ? ? Epithelial ? ? plasmid pcDNA ? ? Flag-MCS-pcDNA3.1 ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPO non-polymer . '3[N-MORPHOLINO]PROPANE SULFONIC ACID' ? 'C7 H15 N O4 S' 209.263 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 330 ? ? ? A . n A 1 2 SER 2 331 ? ? ? A . n A 1 3 ILE 3 332 ? ? ? A . n A 1 4 THR 4 333 333 THR THR A . n A 1 5 ASN 5 334 334 ASN ASN A . n A 1 6 LEU 6 335 335 LEU LEU A . n A 1 7 CYS 7 336 336 CYS CYS A . n A 1 8 PRO 8 337 337 PRO PRO A . n A 1 9 PHE 9 338 338 PHE PHE A . n A 1 10 GLY 10 339 339 GLY GLY A . n A 1 11 GLU 11 340 340 GLU GLU A . n A 1 12 VAL 12 341 341 VAL VAL A . n A 1 13 PHE 13 342 342 PHE PHE A . n A 1 14 ASN 14 343 343 ASN ASN A . n A 1 15 ALA 15 344 344 ALA ALA A . n A 1 16 THR 16 345 345 THR THR A . n A 1 17 ARG 17 346 346 ARG ARG A . n A 1 18 PHE 18 347 347 PHE PHE A . n A 1 19 ALA 19 348 348 ALA ALA A . n A 1 20 SER 20 349 349 SER SER A . n A 1 21 VAL 21 350 350 VAL VAL A . n A 1 22 TYR 22 351 351 TYR TYR A . n A 1 23 ALA 23 352 352 ALA ALA A . n A 1 24 TRP 24 353 353 TRP TRP A . n A 1 25 ASN 25 354 354 ASN ASN A . n A 1 26 ARG 26 355 355 ARG ARG A . n A 1 27 LYS 27 356 356 LYS LYS A . n A 1 28 ARG 28 357 357 ARG ARG A . n A 1 29 ILE 29 358 358 ILE ILE A . n A 1 30 SER 30 359 359 SER SER A . n A 1 31 ASN 31 360 360 ASN ASN A . n A 1 32 CYS 32 361 361 CYS CYS A . n A 1 33 VAL 33 362 362 VAL VAL A . n A 1 34 ALA 34 363 363 ALA ALA A . n A 1 35 ASP 35 364 364 ASP ASP A . n A 1 36 TYR 36 365 365 TYR TYR A . n A 1 37 SER 37 366 366 SER SER A . n A 1 38 VAL 38 367 367 VAL VAL A . n A 1 39 LEU 39 368 368 LEU LEU A . n A 1 40 TYR 40 369 369 TYR TYR A . n A 1 41 ASN 41 370 370 ASN ASN A . n A 1 42 SER 42 371 371 SER SER A . n A 1 43 ALA 43 372 372 ALA ALA A . n A 1 44 SER 44 373 373 SER SER A . n A 1 45 PHE 45 374 374 PHE PHE A . n A 1 46 SER 46 375 375 SER SER A . n A 1 47 THR 47 376 376 THR THR A . n A 1 48 PHE 48 377 377 PHE PHE A . n A 1 49 LYS 49 378 378 LYS LYS A . n A 1 50 CYS 50 379 379 CYS CYS A . n A 1 51 TYR 51 380 380 TYR TYR A . n A 1 52 GLY 52 381 381 GLY GLY A . n A 1 53 VAL 53 382 382 VAL VAL A . n A 1 54 SER 54 383 383 SER SER A . n A 1 55 PRO 55 384 384 PRO PRO A . n A 1 56 THR 56 385 385 THR THR A . n A 1 57 LYS 57 386 386 LYS LYS A . n A 1 58 LEU 58 387 387 LEU LEU A . n A 1 59 ASN 59 388 388 ASN ASN A . n A 1 60 ASP 60 389 389 ASP ASP A . n A 1 61 LEU 61 390 390 LEU LEU A . n A 1 62 CYS 62 391 391 CYS CYS A . n A 1 63 PHE 63 392 392 PHE PHE A . n A 1 64 THR 64 393 393 THR THR A . n A 1 65 ASN 65 394 394 ASN ASN A . n A 1 66 VAL 66 395 395 VAL VAL A . n A 1 67 TYR 67 396 396 TYR TYR A . n A 1 68 ALA 68 397 397 ALA ALA A . n A 1 69 ASP 69 398 398 ASP ASP A . n A 1 70 SER 70 399 399 SER SER A . n A 1 71 PHE 71 400 400 PHE PHE A . n A 1 72 VAL 72 401 401 VAL VAL A . n A 1 73 ILE 73 402 402 ILE ILE A . n A 1 74 ARG 74 403 403 ARG ARG A . n A 1 75 GLY 75 404 404 GLY GLY A . n A 1 76 ASP 76 405 405 ASP ASP A . n A 1 77 GLU 77 406 406 GLU GLU A . n A 1 78 VAL 78 407 407 VAL VAL A . n A 1 79 ARG 79 408 408 ARG ARG A . n A 1 80 GLN 80 409 409 GLN GLN A . n A 1 81 ILE 81 410 410 ILE ILE A . n A 1 82 ALA 82 411 411 ALA ALA A . n A 1 83 PRO 83 412 412 PRO PRO A . n A 1 84 GLY 84 413 413 GLY GLY A . n A 1 85 GLN 85 414 414 GLN GLN A . n A 1 86 THR 86 415 415 THR THR A . n A 1 87 GLY 87 416 416 GLY GLY A . n A 1 88 LYS 88 417 417 LYS LYS A . n A 1 89 ILE 89 418 418 ILE ILE A . n A 1 90 ALA 90 419 419 ALA ALA A . n A 1 91 ASP 91 420 420 ASP ASP A . n A 1 92 TYR 92 421 421 TYR TYR A . n A 1 93 ASN 93 422 422 ASN ASN A . n A 1 94 TYR 94 423 423 TYR TYR A . n A 1 95 LYS 95 424 424 LYS LYS A . n A 1 96 LEU 96 425 425 LEU LEU A . n A 1 97 PRO 97 426 426 PRO PRO A . n A 1 98 ASP 98 427 427 ASP ASP A . n A 1 99 ASP 99 428 428 ASP ASP A . n A 1 100 PHE 100 429 429 PHE PHE A . n A 1 101 THR 101 430 430 THR THR A . n A 1 102 GLY 102 431 431 GLY GLY A . n A 1 103 CYS 103 432 432 CYS CYS A . n A 1 104 VAL 104 433 433 VAL VAL A . n A 1 105 ILE 105 434 434 ILE ILE A . n A 1 106 ALA 106 435 435 ALA ALA A . n A 1 107 TRP 107 436 436 TRP TRP A . n A 1 108 ASN 108 437 437 ASN ASN A . n A 1 109 SER 109 438 438 SER SER A . n A 1 110 ASN 110 439 439 ASN ASN A . n A 1 111 ASN 111 440 440 ASN ASN A . n A 1 112 LEU 112 441 441 LEU LEU A . n A 1 113 ASP 113 442 442 ASP ASP A . n A 1 114 SER 114 443 443 SER SER A . n A 1 115 LYS 115 444 444 LYS LYS A . n A 1 116 VAL 116 445 445 VAL VAL A . n A 1 117 GLY 117 446 446 GLY GLY A . n A 1 118 GLY 118 447 447 GLY GLY A . n A 1 119 ASN 119 448 448 ASN ASN A . n A 1 120 TYR 120 449 449 TYR TYR A . n A 1 121 ASN 121 450 450 ASN ASN A . n A 1 122 TYR 122 451 451 TYR TYR A . n A 1 123 LEU 123 452 452 LEU LEU A . n A 1 124 TYR 124 453 453 TYR TYR A . n A 1 125 ARG 125 454 454 ARG ARG A . n A 1 126 LEU 126 455 455 LEU LEU A . n A 1 127 PHE 127 456 456 PHE PHE A . n A 1 128 ARG 128 457 457 ARG ARG A . n A 1 129 LYS 129 458 458 LYS LYS A . n A 1 130 SER 130 459 459 SER SER A . n A 1 131 ASN 131 460 460 ASN ASN A . n A 1 132 LEU 132 461 461 LEU LEU A . n A 1 133 LYS 133 462 462 LYS LYS A . n A 1 134 PRO 134 463 463 PRO PRO A . n A 1 135 PHE 135 464 464 PHE PHE A . n A 1 136 GLU 136 465 465 GLU GLU A . n A 1 137 ARG 137 466 466 ARG ARG A . n A 1 138 ASP 138 467 467 ASP ASP A . n A 1 139 ILE 139 468 468 ILE ILE A . n A 1 140 SER 140 469 469 SER SER A . n A 1 141 THR 141 470 470 THR THR A . n A 1 142 GLU 142 471 471 GLU GLU A . n A 1 143 ILE 143 472 472 ILE ILE A . n A 1 144 TYR 144 473 473 TYR TYR A . n A 1 145 GLN 145 474 474 GLN GLN A . n A 1 146 ALA 146 475 475 ALA ALA A . n A 1 147 GLY 147 476 476 GLY GLY A . n A 1 148 SER 148 477 477 SER SER A . n A 1 149 THR 149 478 478 THR THR A . n A 1 150 PRO 150 479 479 PRO PRO A . n A 1 151 CYS 151 480 480 CYS CYS A . n A 1 152 ASN 152 481 481 ASN ASN A . n A 1 153 GLY 153 482 482 GLY GLY A . n A 1 154 VAL 154 483 483 VAL VAL A . n A 1 155 GLU 155 484 484 GLU GLU A . n A 1 156 GLY 156 485 485 GLY GLY A . n A 1 157 PHE 157 486 486 PHE PHE A . n A 1 158 ASN 158 487 487 ASN ASN A . n A 1 159 CYS 159 488 488 CYS CYS A . n A 1 160 TYR 160 489 489 TYR TYR A . n A 1 161 PHE 161 490 490 PHE PHE A . n A 1 162 PRO 162 491 491 PRO PRO A . n A 1 163 LEU 163 492 492 LEU LEU A . n A 1 164 GLN 164 493 493 GLN GLN A . n A 1 165 SER 165 494 494 SER SER A . n A 1 166 TYR 166 495 495 TYR TYR A . n A 1 167 GLY 167 496 496 GLY GLY A . n A 1 168 PHE 168 497 497 PHE PHE A . n A 1 169 GLN 169 498 498 GLN GLN A . n A 1 170 PRO 170 499 499 PRO PRO A . n A 1 171 THR 171 500 500 THR THR A . n A 1 172 ASN 172 501 501 ASN ASN A . n A 1 173 GLY 173 502 502 GLY GLY A . n A 1 174 VAL 174 503 503 VAL VAL A . n A 1 175 GLY 175 504 504 GLY GLY A . n A 1 176 TYR 176 505 505 TYR TYR A . n A 1 177 GLN 177 506 506 GLN GLN A . n A 1 178 PRO 178 507 507 PRO PRO A . n A 1 179 TYR 179 508 508 TYR TYR A . n A 1 180 ARG 180 509 509 ARG ARG A . n A 1 181 VAL 181 510 510 VAL VAL A . n A 1 182 VAL 182 511 511 VAL VAL A . n A 1 183 VAL 183 512 512 VAL VAL A . n A 1 184 LEU 184 513 513 LEU LEU A . n A 1 185 SER 185 514 514 SER SER A . n A 1 186 PHE 186 515 515 PHE PHE A . n A 1 187 GLU 187 516 516 GLU GLU A . n A 1 188 LEU 188 517 517 LEU LEU A . n A 1 189 LEU 189 518 518 LEU LEU A . n A 1 190 HIS 190 519 519 HIS HIS A . n A 1 191 ALA 191 520 520 ALA ALA A . n A 1 192 PRO 192 521 521 PRO PRO A . n A 1 193 ALA 193 522 522 ALA ALA A . n A 1 194 THR 194 523 523 THR THR A . n A 1 195 VAL 195 524 524 VAL VAL A . n A 1 196 CYS 196 525 525 CYS CYS A . n A 1 197 GLY 197 526 526 GLY GLY A . n A 1 198 PRO 198 527 527 PRO PRO A . n A 1 199 LYS 199 528 ? ? ? A . n A 1 200 LEU 200 529 ? ? ? A . n A 1 201 VAL 201 530 ? ? ? A . n A 1 202 PRO 202 531 ? ? ? A . n A 1 203 ARG 203 532 ? ? ? A . n B 2 1 GLN 1 1 ? ? ? B . n B 2 2 VAL 2 2 ? ? ? B . n B 2 3 GLN 3 3 3 GLN GLN B . n B 2 4 LEU 4 4 4 LEU LEU B . n B 2 5 VAL 5 5 5 VAL VAL B . n B 2 6 GLU 6 6 6 GLU GLU B . n B 2 7 SER 7 7 7 SER SER B . n B 2 8 GLY 8 8 8 GLY GLY B . n B 2 9 GLY 9 9 9 GLY GLY B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 LEU 11 11 11 LEU LEU B . n B 2 12 VAL 12 12 12 VAL VAL B . n B 2 13 GLN 13 13 13 GLN GLN B . n B 2 14 ALA 14 14 14 ALA ALA B . n B 2 15 GLY 15 15 15 GLY GLY B . n B 2 16 GLY 16 16 16 GLY GLY B . n B 2 17 SER 17 17 17 SER SER B . n B 2 18 LEU 18 18 18 LEU LEU B . n B 2 19 ARG 19 19 19 ARG ARG B . n B 2 20 LEU 20 20 20 LEU LEU B . n B 2 21 SER 21 21 21 SER SER B . n B 2 22 CYS 22 22 22 CYS CYS B . n B 2 23 ALA 23 23 23 ALA ALA B . n B 2 24 ALA 24 24 24 ALA ALA B . n B 2 25 THR 25 25 25 THR THR B . n B 2 26 GLY 26 26 26 GLY GLY B . n B 2 27 TYR 27 27 27 TYR TYR B . n B 2 28 THR 28 28 28 THR THR B . n B 2 29 TRP 29 29 29 TRP TRP B . n B 2 30 SER 30 30 30 SER SER B . n B 2 31 SER 31 31 31 SER SER B . n B 2 32 VAL 32 32 32 VAL VAL B . n B 2 33 CYS 33 33 33 CYS CYS B . n B 2 34 MET 34 34 34 MET MET B . n B 2 35 GLY 35 35 35 GLY GLY B . n B 2 36 TRP 36 36 36 TRP TRP B . n B 2 37 PHE 37 37 37 PHE PHE B . n B 2 38 ARG 38 38 38 ARG ARG B . n B 2 39 GLN 39 39 39 GLN GLN B . n B 2 40 ALA 40 40 40 ALA ALA B . n B 2 41 PRO 41 41 41 PRO PRO B . n B 2 42 GLY 42 42 42 GLY GLY B . n B 2 43 LYS 43 43 43 LYS LYS B . n B 2 44 GLU 44 44 44 GLU GLU B . n B 2 45 ARG 45 45 45 ARG ARG B . n B 2 46 GLU 46 46 46 GLU GLU B . n B 2 47 GLY 47 47 47 GLY GLY B . n B 2 48 VAL 48 48 48 VAL VAL B . n B 2 49 ALA 49 49 49 ALA ALA B . n B 2 50 GLY 50 50 50 GLY GLY B . n B 2 51 ILE 51 51 51 ILE ILE B . n B 2 52 PRO 52 52 52 PRO PRO B . n B 2 53 SER 53 53 53 SER SER B . n B 2 54 GLY 54 54 54 GLY GLY B . n B 2 55 ARG 55 55 55 ARG ARG B . n B 2 56 ASN 56 56 56 ASN ASN B . n B 2 57 ARG 57 57 57 ARG ARG B . n B 2 58 PRO 58 58 58 PRO PRO B . n B 2 59 TYR 59 59 59 TYR TYR B . n B 2 60 TYR 60 60 60 TYR TYR B . n B 2 61 ALA 61 61 61 ALA ALA B . n B 2 62 ASP 62 62 62 ASP ASP B . n B 2 63 SER 63 63 63 SER SER B . n B 2 64 VAL 64 64 64 VAL VAL B . n B 2 65 LYS 65 65 65 LYS LYS B . n B 2 66 GLY 66 66 66 GLY GLY B . n B 2 67 ARG 67 67 67 ARG ARG B . n B 2 68 PHE 68 68 68 PHE PHE B . n B 2 69 THR 69 69 69 THR THR B . n B 2 70 ILE 70 70 70 ILE ILE B . n B 2 71 SER 71 71 71 SER SER B . n B 2 72 GLN 72 72 72 GLN GLN B . n B 2 73 ASP 73 73 73 ASP ASP B . n B 2 74 ASN 74 74 74 ASN ASN B . n B 2 75 ALA 75 75 75 ALA ALA B . n B 2 76 LYS 76 76 76 LYS LYS B . n B 2 77 ASN 77 77 77 ASN ASN B . n B 2 78 ALA 78 78 78 ALA ALA B . n B 2 79 VAL 79 79 79 VAL VAL B . n B 2 80 PHE 80 80 80 PHE PHE B . n B 2 81 LEU 81 81 81 LEU LEU B . n B 2 82 LEU 82 82 82 LEU LEU B . n B 2 83 MET 83 83 83 MET MET B . n B 2 84 ASN 84 84 84 ASN ASN B . n B 2 85 SER 85 85 85 SER SER B . n B 2 86 LEU 86 86 86 LEU LEU B . n B 2 87 LYS 87 87 87 LYS LYS B . n B 2 88 PRO 88 88 88 PRO PRO B . n B 2 89 GLU 89 89 89 GLU GLU B . n B 2 90 ASP 90 90 90 ASP ASP B . n B 2 91 THR 91 91 91 THR THR B . n B 2 92 ALA 92 92 92 ALA ALA B . n B 2 93 ILE 93 93 93 ILE ILE B . n B 2 94 TYR 94 94 94 TYR TYR B . n B 2 95 TYR 95 95 95 TYR TYR B . n B 2 96 CYS 96 96 96 CYS CYS B . n B 2 97 ALA 97 97 97 ALA ALA B . n B 2 98 PRO 98 98 98 PRO PRO B . n B 2 99 CYS 99 99 99 CYS CYS B . n B 2 100 SER 100 100 100 SER SER B . n B 2 101 ALA 101 101 101 ALA ALA B . n B 2 102 PRO 102 102 102 PRO PRO B . n B 2 103 HIS 103 103 103 HIS HIS B . n B 2 104 ASP 104 104 104 ASP ASP B . n B 2 105 PRO 105 105 105 PRO PRO B . n B 2 106 GLU 106 106 106 GLU GLU B . n B 2 107 TYR 107 107 107 TYR TYR B . n B 2 108 ASN 108 108 108 ASN ASN B . n B 2 109 TYR 109 109 109 TYR TYR B . n B 2 110 TRP 110 110 110 TRP TRP B . n B 2 111 GLY 111 111 111 GLY GLY B . n B 2 112 GLN 112 112 112 GLN GLN B . n B 2 113 GLY 113 113 113 GLY GLY B . n B 2 114 THR 114 114 114 THR THR B . n B 2 115 GLN 115 115 115 GLN GLN B . n B 2 116 VAL 116 116 116 VAL VAL B . n B 2 117 THR 117 117 117 THR THR B . n B 2 118 VAL 118 118 118 VAL VAL B . n B 2 119 SER 119 119 119 SER SER B . n B 2 120 SER 120 120 120 SER SER B . n B 2 121 ALA 121 121 121 ALA ALA B . n B 2 122 LEU 122 122 122 LEU LEU B . n B 2 123 VAL 123 123 123 VAL VAL B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 601 3430 NAG NAG A . D 4 MPO 1 602 1 MPO MPO A . E 5 HOH 1 701 86 HOH HOH A . E 5 HOH 2 702 102 HOH HOH A . E 5 HOH 3 703 142 HOH HOH A . E 5 HOH 4 704 189 HOH HOH A . E 5 HOH 5 705 181 HOH HOH A . E 5 HOH 6 706 15 HOH HOH A . E 5 HOH 7 707 165 HOH HOH A . E 5 HOH 8 708 53 HOH HOH A . E 5 HOH 9 709 6 HOH HOH A . E 5 HOH 10 710 117 HOH HOH A . E 5 HOH 11 711 77 HOH HOH A . E 5 HOH 12 712 147 HOH HOH A . E 5 HOH 13 713 92 HOH HOH A . E 5 HOH 14 714 44 HOH HOH A . E 5 HOH 15 715 141 HOH HOH A . E 5 HOH 16 716 171 HOH HOH A . E 5 HOH 17 717 132 HOH HOH A . E 5 HOH 18 718 122 HOH HOH A . E 5 HOH 19 719 19 HOH HOH A . E 5 HOH 20 720 38 HOH HOH A . E 5 HOH 21 721 211 HOH HOH A . E 5 HOH 22 722 37 HOH HOH A . E 5 HOH 23 723 114 HOH HOH A . E 5 HOH 24 724 16 HOH HOH A . E 5 HOH 25 725 84 HOH HOH A . E 5 HOH 26 726 52 HOH HOH A . E 5 HOH 27 727 4 HOH HOH A . E 5 HOH 28 728 58 HOH HOH A . E 5 HOH 29 729 112 HOH HOH A . E 5 HOH 30 730 104 HOH HOH A . E 5 HOH 31 731 199 HOH HOH A . E 5 HOH 32 732 210 HOH HOH A . E 5 HOH 33 733 3 HOH HOH A . E 5 HOH 34 734 71 HOH HOH A . E 5 HOH 35 735 168 HOH HOH A . E 5 HOH 36 736 9 HOH HOH A . E 5 HOH 37 737 39 HOH HOH A . E 5 HOH 38 738 93 HOH HOH A . E 5 HOH 39 739 42 HOH HOH A . E 5 HOH 40 740 89 HOH HOH A . E 5 HOH 41 741 59 HOH HOH A . E 5 HOH 42 742 191 HOH HOH A . E 5 HOH 43 743 116 HOH HOH A . E 5 HOH 44 744 223 HOH HOH A . E 5 HOH 45 745 107 HOH HOH A . E 5 HOH 46 746 69 HOH HOH A . E 5 HOH 47 747 7 HOH HOH A . E 5 HOH 48 748 88 HOH HOH A . E 5 HOH 49 749 179 HOH HOH A . E 5 HOH 50 750 29 HOH HOH A . E 5 HOH 51 751 65 HOH HOH A . E 5 HOH 52 752 18 HOH HOH A . E 5 HOH 53 753 13 HOH HOH A . E 5 HOH 54 754 34 HOH HOH A . E 5 HOH 55 755 99 HOH HOH A . E 5 HOH 56 756 108 HOH HOH A . E 5 HOH 57 757 40 HOH HOH A . E 5 HOH 58 758 158 HOH HOH A . E 5 HOH 59 759 218 HOH HOH A . E 5 HOH 60 760 206 HOH HOH A . E 5 HOH 61 761 173 HOH HOH A . E 5 HOH 62 762 17 HOH HOH A . E 5 HOH 63 763 195 HOH HOH A . E 5 HOH 64 764 85 HOH HOH A . E 5 HOH 65 765 82 HOH HOH A . E 5 HOH 66 766 41 HOH HOH A . E 5 HOH 67 767 32 HOH HOH A . E 5 HOH 68 768 49 HOH HOH A . E 5 HOH 69 769 83 HOH HOH A . E 5 HOH 70 770 28 HOH HOH A . E 5 HOH 71 771 11 HOH HOH A . E 5 HOH 72 772 136 HOH HOH A . E 5 HOH 73 773 153 HOH HOH A . E 5 HOH 74 774 148 HOH HOH A . E 5 HOH 75 775 126 HOH HOH A . E 5 HOH 76 776 146 HOH HOH A . E 5 HOH 77 777 190 HOH HOH A . E 5 HOH 78 778 64 HOH HOH A . E 5 HOH 79 779 47 HOH HOH A . E 5 HOH 80 780 63 HOH HOH A . E 5 HOH 81 781 33 HOH HOH A . E 5 HOH 82 782 75 HOH HOH A . E 5 HOH 83 783 27 HOH HOH A . E 5 HOH 84 784 154 HOH HOH A . E 5 HOH 85 785 156 HOH HOH A . E 5 HOH 86 786 212 HOH HOH A . E 5 HOH 87 787 10 HOH HOH A . E 5 HOH 88 788 215 HOH HOH A . E 5 HOH 89 789 36 HOH HOH A . E 5 HOH 90 790 150 HOH HOH A . E 5 HOH 91 791 50 HOH HOH A . E 5 HOH 92 792 57 HOH HOH A . E 5 HOH 93 793 140 HOH HOH A . E 5 HOH 94 794 184 HOH HOH A . E 5 HOH 95 795 110 HOH HOH A . E 5 HOH 96 796 51 HOH HOH A . E 5 HOH 97 797 131 HOH HOH A . E 5 HOH 98 798 68 HOH HOH A . E 5 HOH 99 799 20 HOH HOH A . E 5 HOH 100 800 1 HOH HOH A . E 5 HOH 101 801 79 HOH HOH A . E 5 HOH 102 802 100 HOH HOH A . E 5 HOH 103 803 30 HOH HOH A . E 5 HOH 104 804 155 HOH HOH A . E 5 HOH 105 805 95 HOH HOH A . E 5 HOH 106 806 101 HOH HOH A . E 5 HOH 107 807 25 HOH HOH A . E 5 HOH 108 808 12 HOH HOH A . E 5 HOH 109 809 162 HOH HOH A . E 5 HOH 110 810 73 HOH HOH A . E 5 HOH 111 811 139 HOH HOH A . E 5 HOH 112 812 56 HOH HOH A . E 5 HOH 113 813 113 HOH HOH A . E 5 HOH 114 814 152 HOH HOH A . E 5 HOH 115 815 109 HOH HOH A . E 5 HOH 116 816 81 HOH HOH A . E 5 HOH 117 817 187 HOH HOH A . E 5 HOH 118 818 198 HOH HOH A . E 5 HOH 119 819 60 HOH HOH A . E 5 HOH 120 820 125 HOH HOH A . E 5 HOH 121 821 128 HOH HOH A . E 5 HOH 122 822 217 HOH HOH A . E 5 HOH 123 823 163 HOH HOH A . E 5 HOH 124 824 105 HOH HOH A . E 5 HOH 125 825 169 HOH HOH A . E 5 HOH 126 826 14 HOH HOH A . E 5 HOH 127 827 133 HOH HOH A . E 5 HOH 128 828 220 HOH HOH A . E 5 HOH 129 829 178 HOH HOH A . E 5 HOH 130 830 96 HOH HOH A . E 5 HOH 131 831 177 HOH HOH A . E 5 HOH 132 832 213 HOH HOH A . E 5 HOH 133 833 94 HOH HOH A . E 5 HOH 134 834 166 HOH HOH A . E 5 HOH 135 835 185 HOH HOH A . E 5 HOH 136 836 204 HOH HOH A . E 5 HOH 137 837 90 HOH HOH A . E 5 HOH 138 838 203 HOH HOH A . E 5 HOH 139 839 196 HOH HOH A . E 5 HOH 140 840 202 HOH HOH A . E 5 HOH 141 841 221 HOH HOH A . E 5 HOH 142 842 192 HOH HOH A . E 5 HOH 143 843 80 HOH HOH A . E 5 HOH 144 844 208 HOH HOH A . E 5 HOH 145 845 143 HOH HOH A . E 5 HOH 146 846 205 HOH HOH A . F 5 HOH 1 201 176 HOH HOH B . F 5 HOH 2 202 134 HOH HOH B . F 5 HOH 3 203 87 HOH HOH B . F 5 HOH 4 204 135 HOH HOH B . F 5 HOH 5 205 180 HOH HOH B . F 5 HOH 6 206 194 HOH HOH B . F 5 HOH 7 207 45 HOH HOH B . F 5 HOH 8 208 106 HOH HOH B . F 5 HOH 9 209 91 HOH HOH B . F 5 HOH 10 210 222 HOH HOH B . F 5 HOH 11 211 62 HOH HOH B . F 5 HOH 12 212 2 HOH HOH B . F 5 HOH 13 213 76 HOH HOH B . F 5 HOH 14 214 111 HOH HOH B . F 5 HOH 15 215 170 HOH HOH B . F 5 HOH 16 216 22 HOH HOH B . F 5 HOH 17 217 54 HOH HOH B . F 5 HOH 18 218 72 HOH HOH B . F 5 HOH 19 219 123 HOH HOH B . F 5 HOH 20 220 78 HOH HOH B . F 5 HOH 21 221 70 HOH HOH B . F 5 HOH 22 222 55 HOH HOH B . F 5 HOH 23 223 174 HOH HOH B . F 5 HOH 24 224 26 HOH HOH B . F 5 HOH 25 225 31 HOH HOH B . F 5 HOH 26 226 161 HOH HOH B . F 5 HOH 27 227 120 HOH HOH B . F 5 HOH 28 228 186 HOH HOH B . F 5 HOH 29 229 124 HOH HOH B . F 5 HOH 30 230 21 HOH HOH B . F 5 HOH 31 231 200 HOH HOH B . F 5 HOH 32 232 138 HOH HOH B . F 5 HOH 33 233 118 HOH HOH B . F 5 HOH 34 234 48 HOH HOH B . F 5 HOH 35 235 144 HOH HOH B . F 5 HOH 36 236 66 HOH HOH B . F 5 HOH 37 237 23 HOH HOH B . F 5 HOH 38 238 8 HOH HOH B . F 5 HOH 39 239 115 HOH HOH B . F 5 HOH 40 240 35 HOH HOH B . F 5 HOH 41 241 43 HOH HOH B . F 5 HOH 42 242 159 HOH HOH B . F 5 HOH 43 243 24 HOH HOH B . F 5 HOH 44 244 137 HOH HOH B . F 5 HOH 45 245 61 HOH HOH B . F 5 HOH 46 246 5 HOH HOH B . F 5 HOH 47 247 151 HOH HOH B . F 5 HOH 48 248 46 HOH HOH B . F 5 HOH 49 249 188 HOH HOH B . F 5 HOH 50 250 98 HOH HOH B . F 5 HOH 51 251 129 HOH HOH B . F 5 HOH 52 252 224 HOH HOH B . F 5 HOH 53 253 97 HOH HOH B . F 5 HOH 54 254 209 HOH HOH B . F 5 HOH 55 255 74 HOH HOH B . F 5 HOH 56 256 219 HOH HOH B . F 5 HOH 57 257 167 HOH HOH B . F 5 HOH 58 258 145 HOH HOH B . F 5 HOH 59 259 130 HOH HOH B . F 5 HOH 60 260 175 HOH HOH B . F 5 HOH 61 261 149 HOH HOH B . F 5 HOH 62 262 216 HOH HOH B . F 5 HOH 63 263 157 HOH HOH B . F 5 HOH 64 264 197 HOH HOH B . F 5 HOH 65 265 127 HOH HOH B . F 5 HOH 66 266 214 HOH HOH B . F 5 HOH 67 267 103 HOH HOH B . F 5 HOH 68 268 207 HOH HOH B . F 5 HOH 69 269 201 HOH HOH B . F 5 HOH 70 270 67 HOH HOH B . F 5 HOH 71 271 172 HOH HOH B . F 5 HOH 72 272 193 HOH HOH B . F 5 HOH 73 273 183 HOH HOH B . F 5 HOH 74 274 121 HOH HOH B . F 5 HOH 75 275 182 HOH HOH B . F 5 HOH 76 276 119 HOH HOH B . F 5 HOH 77 277 164 HOH HOH B . F 5 HOH 78 278 160 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 104.310 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8RBY _cell.details ? _cell.formula_units_Z ? _cell.length_a 44.481 _cell.length_a_esd ? _cell.length_b 55.915 _cell.length_b_esd ? _cell.length_c 58.774 _cell.length_c_esd ? _cell.volume 141644.469 _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8RBY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8RBY _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 37.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '40% PEG-5000 MME, 100mM MOPS pH 7, 10 mM CaCl2' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-05-08 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97926 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALBA BEAMLINE XALOC' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97926 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline XALOC _diffrn_source.pdbx_synchrotron_site ALBA # _reflns.B_iso_Wilson_estimate 22.20 _reflns.entry_id 8RBY _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 43.10 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 21861 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.8 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.97 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.130 _reflns.pdbx_Rpim_I_all 0.074 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.992 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.106 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.94 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1437 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.7 _reflns_shell.pdbx_chi_squared 0.97 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.785 _reflns_shell.pdbx_Rpim_I_all 0.459 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.674 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 99.1 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.633 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 26.77 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8RBY _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.90 _refine.ls_d_res_low 43.10 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 21844 _refine.ls_number_reflns_R_free 1049 _refine.ls_number_reflns_R_work 20795 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.43 _refine.ls_percent_reflns_R_free 4.80 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1888 _refine.ls_R_factor_R_free 0.2336 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1866 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.9427 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1972 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 43.10 _refine_hist.number_atoms_solvent 224 _refine_hist.number_atoms_total 2706 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 2455 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0072 ? 2575 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.0824 ? 3514 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0687 ? 373 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0112 ? 458 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 9.2493 ? 377 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.90 2.00 . . 153 2963 98.98 . . . . 0.2367 . . . . . . . . . . . 0.2878 'X-RAY DIFFRACTION' 2.00 2.13 . . 152 2939 98.03 . . . . 0.2205 . . . . . . . . . . . 0.2635 'X-RAY DIFFRACTION' 2.13 2.29 . . 150 2969 99.20 . . . . 0.2062 . . . . . . . . . . . 0.2437 'X-RAY DIFFRACTION' 2.29 2.52 . . 158 2969 99.08 . . . . 0.1974 . . . . . . . . . . . 0.2553 'X-RAY DIFFRACTION' 2.52 2.88 . . 156 2967 98.83 . . . . 0.1975 . . . . . . . . . . . 0.2214 'X-RAY DIFFRACTION' 2.88 3.63 . . 137 2984 98.02 . . . . 0.1774 . . . . . . . . . . . 0.2454 'X-RAY DIFFRACTION' 3.63 43.10 . . 143 3004 96.89 . . . . 0.1613 . . . . . . . . . . . 0.2013 # _struct.entry_id 8RBY _struct.title 'The crystal structure of the SARS-CoV-2 receptor binding domain in complex with the neutralizing nanobody 1.26' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8RBY _struct_keywords.text 'coronavirus, COVID-19, RBD, SARS-CoV-2, spike, nanobodies, neutralization, VIRAL PROTEIN, ANTIVIRAL PROTEIN' _struct_keywords.pdbx_keywords 'ANTIVIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;ITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIA PGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFP LQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPK ; 332 2 PDB 8RBY 8RBY ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8RBY A 3 ? 199 ? P0DTC2 332 ? 528 ? 332 528 2 2 8RBY B 1 ? 123 ? 8RBY 1 ? 123 ? 1 123 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8RBY GLY A 1 ? UNP P0DTC2 ? ? 'expression tag' 330 1 1 8RBY SER A 2 ? UNP P0DTC2 ? ? 'expression tag' 331 2 1 8RBY LEU A 200 ? UNP P0DTC2 ? ? 'expression tag' 529 3 1 8RBY VAL A 201 ? UNP P0DTC2 ? ? 'expression tag' 530 4 1 8RBY PRO A 202 ? UNP P0DTC2 ? ? 'expression tag' 531 5 1 8RBY ARG A 203 ? UNP P0DTC2 ? ? 'expression tag' 532 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2530 ? 1 MORE -6 ? 1 'SSA (A^2)' 15150 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'surface plasmon resonance' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 8 ? ASN A 14 ? PRO A 337 ASN A 343 1 ? 7 HELX_P HELX_P2 AA2 SER A 20 ? TRP A 24 ? SER A 349 TRP A 353 5 ? 5 HELX_P HELX_P3 AA3 TYR A 36 ? ASN A 41 ? TYR A 365 ASN A 370 1 ? 6 HELX_P HELX_P4 AA4 LYS A 57 ? ASP A 60 ? LYS A 386 ASP A 389 5 ? 4 HELX_P HELX_P5 AA5 ASP A 76 ? ILE A 81 ? ASP A 405 ILE A 410 5 ? 6 HELX_P HELX_P6 AA6 GLY A 87 ? ASN A 93 ? GLY A 416 ASN A 422 1 ? 7 HELX_P HELX_P7 AA7 SER A 109 ? SER A 114 ? SER A 438 SER A 443 1 ? 6 HELX_P HELX_P8 AA8 GLY A 173 ? TYR A 176 ? GLY A 502 TYR A 505 5 ? 4 HELX_P HELX_P9 AA9 GLY B 26 ? TRP B 29 ? GLY B 26 TRP B 29 5 ? 4 HELX_P HELX_P10 AB1 LYS B 87 ? THR B 91 ? LYS B 87 THR B 91 5 ? 5 HELX_P HELX_P11 AB2 SER B 100 ? ASP B 104 ? SER B 100 ASP B 104 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 32 SG ? ? A CYS 336 A CYS 361 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf2 disulf ? ? A CYS 50 SG ? ? ? 1_555 A CYS 103 SG ? ? A CYS 379 A CYS 432 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf3 disulf ? ? A CYS 62 SG ? ? ? 1_555 A CYS 196 SG ? ? A CYS 391 A CYS 525 1_555 ? ? ? ? ? ? ? 2.055 ? ? disulf4 disulf ? ? A CYS 151 SG ? ? ? 1_555 A CYS 159 SG ? ? A CYS 480 A CYS 488 1_555 ? ? ? ? ? ? ? 2.050 ? ? disulf5 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 96 SG ? ? B CYS 22 B CYS 96 1_555 ? ? ? ? ? ? ? 2.047 ? ? disulf6 disulf ? ? B CYS 33 SG ? ? ? 1_555 B CYS 99 SG ? ? B CYS 33 B CYS 99 1_555 ? ? ? ? ? ? ? 2.080 ? ? covale1 covale one ? A ASN 14 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 343 A NAG 601 1_555 ? ? ? ? ? ? ? 1.431 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG C . ? ASN A 14 ? NAG A 601 ? 1_555 ASN A 343 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 CYS A 7 ? CYS A 32 ? CYS A 336 ? 1_555 CYS A 361 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 50 ? CYS A 103 ? CYS A 379 ? 1_555 CYS A 432 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 62 ? CYS A 196 ? CYS A 391 ? 1_555 CYS A 525 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 151 ? CYS A 159 ? CYS A 480 ? 1_555 CYS A 488 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS B 22 ? CYS B 96 ? CYS B 22 ? 1_555 CYS B 96 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS B 33 ? CYS B 99 ? CYS B 33 ? 1_555 CYS B 99 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 3 ? AA3 ? 2 ? AA4 ? 2 ? AA5 ? 4 ? AA6 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA6 4 5 ? anti-parallel AA6 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASN A 25 ? ILE A 29 ? ASN A 354 ILE A 358 AA1 2 ASN A 65 ? ARG A 74 ? ASN A 394 ARG A 403 AA1 3 PRO A 178 ? GLU A 187 ? PRO A 507 GLU A 516 AA1 4 GLY A 102 ? ASN A 108 ? GLY A 431 ASN A 437 AA1 5 PHE A 45 ? TYR A 51 ? PHE A 374 TYR A 380 AA2 1 CYS A 32 ? VAL A 33 ? CYS A 361 VAL A 362 AA2 2 VAL A 195 ? CYS A 196 ? VAL A 524 CYS A 525 AA2 3 CYS A 62 ? PHE A 63 ? CYS A 391 PHE A 392 AA3 1 LEU A 123 ? ARG A 125 ? LEU A 452 ARG A 454 AA3 2 LEU A 163 ? SER A 165 ? LEU A 492 SER A 494 AA4 1 TYR A 144 ? GLN A 145 ? TYR A 473 GLN A 474 AA4 2 CYS A 159 ? TYR A 160 ? CYS A 488 TYR A 489 AA5 1 LEU B 4 ? SER B 7 ? LEU B 4 SER B 7 AA5 2 LEU B 18 ? ALA B 24 ? LEU B 18 ALA B 24 AA5 3 ALA B 78 ? MET B 83 ? ALA B 78 MET B 83 AA5 4 PHE B 68 ? ASP B 73 ? PHE B 68 ASP B 73 AA6 1 LEU B 11 ? GLN B 13 ? LEU B 11 GLN B 13 AA6 2 THR B 114 ? SER B 119 ? THR B 114 SER B 119 AA6 3 ALA B 92 ? PRO B 98 ? ALA B 92 PRO B 98 AA6 4 CYS B 33 ? GLN B 39 ? CYS B 33 GLN B 39 AA6 5 GLU B 46 ? PRO B 52 ? GLU B 46 PRO B 52 AA6 6 TYR B 59 ? TYR B 60 ? TYR B 59 TYR B 60 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 29 ? N ILE A 358 O VAL A 66 ? O VAL A 395 AA1 2 3 N ASP A 69 ? N ASP A 398 O VAL A 183 ? O VAL A 512 AA1 3 4 O VAL A 182 ? O VAL A 511 N ILE A 105 ? N ILE A 434 AA1 4 5 O GLY A 102 ? O GLY A 431 N TYR A 51 ? N TYR A 380 AA2 1 2 N CYS A 32 ? N CYS A 361 O CYS A 196 ? O CYS A 525 AA2 2 3 O VAL A 195 ? O VAL A 524 N PHE A 63 ? N PHE A 392 AA3 1 2 N TYR A 124 ? N TYR A 453 O GLN A 164 ? O GLN A 493 AA4 1 2 N TYR A 144 ? N TYR A 473 O TYR A 160 ? O TYR A 489 AA5 1 2 N SER B 7 ? N SER B 7 O SER B 21 ? O SER B 21 AA5 2 3 N LEU B 18 ? N LEU B 18 O MET B 83 ? O MET B 83 AA5 3 4 O LEU B 82 ? O LEU B 82 N THR B 69 ? N THR B 69 AA6 1 2 N VAL B 12 ? N VAL B 12 O SER B 119 ? O SER B 119 AA6 2 3 O VAL B 116 ? O VAL B 116 N ALA B 92 ? N ALA B 92 AA6 3 4 O TYR B 95 ? O TYR B 95 N PHE B 37 ? N PHE B 37 AA6 4 5 N TRP B 36 ? N TRP B 36 O ALA B 49 ? O ALA B 49 AA6 5 6 N GLY B 50 ? N GLY B 50 O TYR B 59 ? O TYR B 59 # _pdbx_entry_details.entry_id 8RBY _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 254 ? ? O B HOH 259 ? ? 1.99 2 1 OG A SER 375 ? A O A HOH 701 ? ? 2.08 3 1 NH1 A ARG 357 ? ? O A HOH 702 ? ? 2.13 4 1 OG A SER 371 ? ? O A HOH 703 ? ? 2.13 5 1 OD1 A ASN 360 ? ? O A HOH 704 ? ? 2.13 6 1 O A HOH 837 ? ? O B HOH 243 ? ? 2.16 7 1 OH A TYR 365 ? ? O A HOH 705 ? ? 2.17 8 1 NH2 B ARG 57 ? ? O B HOH 201 ? ? 2.19 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 122 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 122 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 122 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 129.26 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 13.96 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 352 ? ? -108.82 44.28 2 1 ALA A 372 ? ? 41.32 29.65 3 1 PHE A 377 ? ? -150.32 88.39 4 1 ASN A 422 ? ? -124.98 -54.80 5 1 HIS A 519 ? ? -105.27 54.36 6 1 ARG B 55 ? ? 67.44 -23.53 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y+1/2,-z # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id B _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 278 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.83 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 330 ? A GLY 1 2 1 Y 1 A SER 331 ? A SER 2 3 1 Y 1 A ILE 332 ? A ILE 3 4 1 Y 1 A LYS 528 ? A LYS 199 5 1 Y 1 A LEU 529 ? A LEU 200 6 1 Y 1 A VAL 530 ? A VAL 201 7 1 Y 1 A PRO 531 ? A PRO 202 8 1 Y 1 A ARG 532 ? A ARG 203 9 1 Y 1 B GLN 1 ? B GLN 1 10 1 Y 1 B VAL 2 ? B VAL 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MPO S1 S N N 250 MPO O1 O N N 251 MPO O2 O N N 252 MPO O4 O N N 253 MPO N1 N N N 254 MPO C1 C N N 255 MPO O3 O N N 256 MPO C2 C N N 257 MPO C3 C N N 258 MPO C4 C N N 259 MPO C5 C N N 260 MPO C6 C N N 261 MPO C7 C N N 262 MPO H11 H N N 263 MPO H12 H N N 264 MPO HO3 H N N 265 MPO H21 H N N 266 MPO H22 H N N 267 MPO H31 H N N 268 MPO H32 H N N 269 MPO H41 H N N 270 MPO H42 H N N 271 MPO H51 H N N 272 MPO H52 H N N 273 MPO H61 H N N 274 MPO H62 H N N 275 MPO H71 H N N 276 MPO H72 H N N 277 NAG C1 C N R 278 NAG C2 C N R 279 NAG C3 C N R 280 NAG C4 C N S 281 NAG C5 C N R 282 NAG C6 C N N 283 NAG C7 C N N 284 NAG C8 C N N 285 NAG N2 N N N 286 NAG O1 O N N 287 NAG O3 O N N 288 NAG O4 O N N 289 NAG O5 O N N 290 NAG O6 O N N 291 NAG O7 O N N 292 NAG H1 H N N 293 NAG H2 H N N 294 NAG H3 H N N 295 NAG H4 H N N 296 NAG H5 H N N 297 NAG H61 H N N 298 NAG H62 H N N 299 NAG H81 H N N 300 NAG H82 H N N 301 NAG H83 H N N 302 NAG HN2 H N N 303 NAG HO1 H N N 304 NAG HO3 H N N 305 NAG HO4 H N N 306 NAG HO6 H N N 307 PHE N N N N 308 PHE CA C N S 309 PHE C C N N 310 PHE O O N N 311 PHE CB C N N 312 PHE CG C Y N 313 PHE CD1 C Y N 314 PHE CD2 C Y N 315 PHE CE1 C Y N 316 PHE CE2 C Y N 317 PHE CZ C Y N 318 PHE OXT O N N 319 PHE H H N N 320 PHE H2 H N N 321 PHE HA H N N 322 PHE HB2 H N N 323 PHE HB3 H N N 324 PHE HD1 H N N 325 PHE HD2 H N N 326 PHE HE1 H N N 327 PHE HE2 H N N 328 PHE HZ H N N 329 PHE HXT H N N 330 PRO N N N N 331 PRO CA C N S 332 PRO C C N N 333 PRO O O N N 334 PRO CB C N N 335 PRO CG C N N 336 PRO CD C N N 337 PRO OXT O N N 338 PRO H H N N 339 PRO HA H N N 340 PRO HB2 H N N 341 PRO HB3 H N N 342 PRO HG2 H N N 343 PRO HG3 H N N 344 PRO HD2 H N N 345 PRO HD3 H N N 346 PRO HXT H N N 347 SER N N N N 348 SER CA C N S 349 SER C C N N 350 SER O O N N 351 SER CB C N N 352 SER OG O N N 353 SER OXT O N N 354 SER H H N N 355 SER H2 H N N 356 SER HA H N N 357 SER HB2 H N N 358 SER HB3 H N N 359 SER HG H N N 360 SER HXT H N N 361 THR N N N N 362 THR CA C N S 363 THR C C N N 364 THR O O N N 365 THR CB C N R 366 THR OG1 O N N 367 THR CG2 C N N 368 THR OXT O N N 369 THR H H N N 370 THR H2 H N N 371 THR HA H N N 372 THR HB H N N 373 THR HG1 H N N 374 THR HG21 H N N 375 THR HG22 H N N 376 THR HG23 H N N 377 THR HXT H N N 378 TRP N N N N 379 TRP CA C N S 380 TRP C C N N 381 TRP O O N N 382 TRP CB C N N 383 TRP CG C Y N 384 TRP CD1 C Y N 385 TRP CD2 C Y N 386 TRP NE1 N Y N 387 TRP CE2 C Y N 388 TRP CE3 C Y N 389 TRP CZ2 C Y N 390 TRP CZ3 C Y N 391 TRP CH2 C Y N 392 TRP OXT O N N 393 TRP H H N N 394 TRP H2 H N N 395 TRP HA H N N 396 TRP HB2 H N N 397 TRP HB3 H N N 398 TRP HD1 H N N 399 TRP HE1 H N N 400 TRP HE3 H N N 401 TRP HZ2 H N N 402 TRP HZ3 H N N 403 TRP HH2 H N N 404 TRP HXT H N N 405 TYR N N N N 406 TYR CA C N S 407 TYR C C N N 408 TYR O O N N 409 TYR CB C N N 410 TYR CG C Y N 411 TYR CD1 C Y N 412 TYR CD2 C Y N 413 TYR CE1 C Y N 414 TYR CE2 C Y N 415 TYR CZ C Y N 416 TYR OH O N N 417 TYR OXT O N N 418 TYR H H N N 419 TYR H2 H N N 420 TYR HA H N N 421 TYR HB2 H N N 422 TYR HB3 H N N 423 TYR HD1 H N N 424 TYR HD2 H N N 425 TYR HE1 H N N 426 TYR HE2 H N N 427 TYR HH H N N 428 TYR HXT H N N 429 VAL N N N N 430 VAL CA C N S 431 VAL C C N N 432 VAL O O N N 433 VAL CB C N N 434 VAL CG1 C N N 435 VAL CG2 C N N 436 VAL OXT O N N 437 VAL H H N N 438 VAL H2 H N N 439 VAL HA H N N 440 VAL HB H N N 441 VAL HG11 H N N 442 VAL HG12 H N N 443 VAL HG13 H N N 444 VAL HG21 H N N 445 VAL HG22 H N N 446 VAL HG23 H N N 447 VAL HXT H N N 448 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 MPO S1 O1 doub N N 237 MPO S1 O2 doub N N 238 MPO S1 C1 sing N N 239 MPO S1 O3 sing N N 240 MPO O4 C5 sing N N 241 MPO O4 C6 sing N N 242 MPO N1 C3 sing N N 243 MPO N1 C4 sing N N 244 MPO N1 C7 sing N N 245 MPO C1 C2 sing N N 246 MPO C1 H11 sing N N 247 MPO C1 H12 sing N N 248 MPO O3 HO3 sing N N 249 MPO C2 C3 sing N N 250 MPO C2 H21 sing N N 251 MPO C2 H22 sing N N 252 MPO C3 H31 sing N N 253 MPO C3 H32 sing N N 254 MPO C4 C5 sing N N 255 MPO C4 H41 sing N N 256 MPO C4 H42 sing N N 257 MPO C5 H51 sing N N 258 MPO C5 H52 sing N N 259 MPO C6 C7 sing N N 260 MPO C6 H61 sing N N 261 MPO C6 H62 sing N N 262 MPO C7 H71 sing N N 263 MPO C7 H72 sing N N 264 NAG C1 C2 sing N N 265 NAG C1 O1 sing N N 266 NAG C1 O5 sing N N 267 NAG C1 H1 sing N N 268 NAG C2 C3 sing N N 269 NAG C2 N2 sing N N 270 NAG C2 H2 sing N N 271 NAG C3 C4 sing N N 272 NAG C3 O3 sing N N 273 NAG C3 H3 sing N N 274 NAG C4 C5 sing N N 275 NAG C4 O4 sing N N 276 NAG C4 H4 sing N N 277 NAG C5 C6 sing N N 278 NAG C5 O5 sing N N 279 NAG C5 H5 sing N N 280 NAG C6 O6 sing N N 281 NAG C6 H61 sing N N 282 NAG C6 H62 sing N N 283 NAG C7 C8 sing N N 284 NAG C7 N2 sing N N 285 NAG C7 O7 doub N N 286 NAG C8 H81 sing N N 287 NAG C8 H82 sing N N 288 NAG C8 H83 sing N N 289 NAG N2 HN2 sing N N 290 NAG O1 HO1 sing N N 291 NAG O3 HO3 sing N N 292 NAG O4 HO4 sing N N 293 NAG O6 HO6 sing N N 294 PHE N CA sing N N 295 PHE N H sing N N 296 PHE N H2 sing N N 297 PHE CA C sing N N 298 PHE CA CB sing N N 299 PHE CA HA sing N N 300 PHE C O doub N N 301 PHE C OXT sing N N 302 PHE CB CG sing N N 303 PHE CB HB2 sing N N 304 PHE CB HB3 sing N N 305 PHE CG CD1 doub Y N 306 PHE CG CD2 sing Y N 307 PHE CD1 CE1 sing Y N 308 PHE CD1 HD1 sing N N 309 PHE CD2 CE2 doub Y N 310 PHE CD2 HD2 sing N N 311 PHE CE1 CZ doub Y N 312 PHE CE1 HE1 sing N N 313 PHE CE2 CZ sing Y N 314 PHE CE2 HE2 sing N N 315 PHE CZ HZ sing N N 316 PHE OXT HXT sing N N 317 PRO N CA sing N N 318 PRO N CD sing N N 319 PRO N H sing N N 320 PRO CA C sing N N 321 PRO CA CB sing N N 322 PRO CA HA sing N N 323 PRO C O doub N N 324 PRO C OXT sing N N 325 PRO CB CG sing N N 326 PRO CB HB2 sing N N 327 PRO CB HB3 sing N N 328 PRO CG CD sing N N 329 PRO CG HG2 sing N N 330 PRO CG HG3 sing N N 331 PRO CD HD2 sing N N 332 PRO CD HD3 sing N N 333 PRO OXT HXT sing N N 334 SER N CA sing N N 335 SER N H sing N N 336 SER N H2 sing N N 337 SER CA C sing N N 338 SER CA CB sing N N 339 SER CA HA sing N N 340 SER C O doub N N 341 SER C OXT sing N N 342 SER CB OG sing N N 343 SER CB HB2 sing N N 344 SER CB HB3 sing N N 345 SER OG HG sing N N 346 SER OXT HXT sing N N 347 THR N CA sing N N 348 THR N H sing N N 349 THR N H2 sing N N 350 THR CA C sing N N 351 THR CA CB sing N N 352 THR CA HA sing N N 353 THR C O doub N N 354 THR C OXT sing N N 355 THR CB OG1 sing N N 356 THR CB CG2 sing N N 357 THR CB HB sing N N 358 THR OG1 HG1 sing N N 359 THR CG2 HG21 sing N N 360 THR CG2 HG22 sing N N 361 THR CG2 HG23 sing N N 362 THR OXT HXT sing N N 363 TRP N CA sing N N 364 TRP N H sing N N 365 TRP N H2 sing N N 366 TRP CA C sing N N 367 TRP CA CB sing N N 368 TRP CA HA sing N N 369 TRP C O doub N N 370 TRP C OXT sing N N 371 TRP CB CG sing N N 372 TRP CB HB2 sing N N 373 TRP CB HB3 sing N N 374 TRP CG CD1 doub Y N 375 TRP CG CD2 sing Y N 376 TRP CD1 NE1 sing Y N 377 TRP CD1 HD1 sing N N 378 TRP CD2 CE2 doub Y N 379 TRP CD2 CE3 sing Y N 380 TRP NE1 CE2 sing Y N 381 TRP NE1 HE1 sing N N 382 TRP CE2 CZ2 sing Y N 383 TRP CE3 CZ3 doub Y N 384 TRP CE3 HE3 sing N N 385 TRP CZ2 CH2 doub Y N 386 TRP CZ2 HZ2 sing N N 387 TRP CZ3 CH2 sing Y N 388 TRP CZ3 HZ3 sing N N 389 TRP CH2 HH2 sing N N 390 TRP OXT HXT sing N N 391 TYR N CA sing N N 392 TYR N H sing N N 393 TYR N H2 sing N N 394 TYR CA C sing N N 395 TYR CA CB sing N N 396 TYR CA HA sing N N 397 TYR C O doub N N 398 TYR C OXT sing N N 399 TYR CB CG sing N N 400 TYR CB HB2 sing N N 401 TYR CB HB3 sing N N 402 TYR CG CD1 doub Y N 403 TYR CG CD2 sing Y N 404 TYR CD1 CE1 sing Y N 405 TYR CD1 HD1 sing N N 406 TYR CD2 CE2 doub Y N 407 TYR CD2 HD2 sing N N 408 TYR CE1 CZ doub Y N 409 TYR CE1 HE1 sing N N 410 TYR CE2 CZ sing Y N 411 TYR CE2 HE2 sing N N 412 TYR CZ OH sing N N 413 TYR OH HH sing N N 414 TYR OXT HXT sing N N 415 VAL N CA sing N N 416 VAL N H sing N N 417 VAL N H2 sing N N 418 VAL CA C sing N N 419 VAL CA CB sing N N 420 VAL CA HA sing N N 421 VAL C O doub N N 422 VAL C OXT sing N N 423 VAL CB CG1 sing N N 424 VAL CB CG2 sing N N 425 VAL CB HB sing N N 426 VAL CG1 HG11 sing N N 427 VAL CG1 HG12 sing N N 428 VAL CG1 HG13 sing N N 429 VAL CG2 HG21 sing N N 430 VAL CG2 HG22 sing N N 431 VAL CG2 HG23 sing N N 432 VAL OXT HXT sing N N 433 # _pdbx_audit_support.funding_organization 'Ministerio de Ciencia e Innovacion (MCIN)' _pdbx_audit_support.country Spain _pdbx_audit_support.grant_number 202020E079 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 7KJH 'Similar Nanobody' 2 ? 'experimental model' Other ? 'RBD of another structure of a refined complex' # _space_group.name_H-M_alt 'P 1 21 1' _space_group.name_Hall 'P 2yb' _space_group.IT_number 4 _space_group.crystal_system monoclinic _space_group.id 1 # _atom_sites.entry_id 8RBY _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.022482 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005735 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017884 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017559 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_