data_8RC7 # _entry.id 8RC7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8RC7 pdb_00008rc7 10.2210/pdb8rc7/pdb WWPDB D_1292130977 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8RC7 _pdbx_database_status.recvd_initial_deposition_date 2023-12-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email eleanor.dodson@york.ac.uk _pdbx_contact_author.name_first Eleanor _pdbx_contact_author.name_last Dodson _pdbx_contact_author.name_mi J _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-8968-9814 # _audit_author.name 'Dodson, E.J.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID 0000-0002-8968-9814 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary Nature NATUAS 0006 0028-0836 ? ? 275 ? 206 207 'The crystal structure of a hydrated gramicidin S urea complex' 1978 ? ? ? ? ? ? ? ? ? ? ? ? DK ? ? 1 'Acta Crystallogr D Biol Crystallogr' ABCRE6 0766 0907-4449 ? ? 53 ? 151 159 'Channels in the gramicidin S-with-urea structure and their possible relation to transmembrane ion transport.' 1997 ? 10.1107/S0907444995000916 15299949 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dodson, E.J.' 1 0000-0002-8968-9814 1 'Tishchenko, G.N.' 2 ? 1 'Andrianov, V.I.' 3 ? 1 'Vainstein, B.K.' 4 ? 1 'Woolfson, M.M.' 5 ? 1 'Dodson, E.J.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Gramicidin S' 1159.461 1 ? ? ? ? 2 non-polymer syn UREA 60.055 1 ? ? ? ? 3 water nat water 18.015 9 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'V(ORN)L(DPN)PV(ORN)L(DPN)P' _entity_poly.pdbx_seq_one_letter_code_can VALFPVALFP _entity_poly.pdbx_strand_id D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 UREA URE 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ORN n 1 3 LEU n 1 4 DPN n 1 5 PRO n 1 6 VAL n 1 7 ORN n 1 8 LEU n 1 9 DPN n 1 10 PRO n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 10 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Brevibacillus brevis' _entity_src_nat.pdbx_ncbi_taxonomy_id 1393 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DPN 'D-peptide linking' . D-PHENYLALANINE ? 'C9 H11 N O2' 165.189 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 ORN 'L-peptide linking' n L-ornithine ? 'C5 H12 N2 O2' 132.161 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 URE non-polymer . UREA ? 'C H4 N2 O' 60.055 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 3 VAL VAL D . n A 1 2 ORN 2 2 4 ORN ORN D . n A 1 3 LEU 3 3 5 LEU LEU D . n A 1 4 DPN 4 4 6 DPN PHE D . n A 1 5 PRO 5 5 7 PRO PRO D . n A 1 6 VAL 6 6 8 VAL VAL D . n A 1 7 ORN 7 7 9 ORN ORN D . n A 1 8 LEU 8 8 10 LEU LEU D . n A 1 9 DPN 9 9 1 DPN PHE D . n A 1 10 PRO 10 10 2 PRO PRO D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 URE 1 101 1 URE URE D . C 3 HOH 1 201 88 HOH HOH D . C 3 HOH 2 202 89 HOH HOH D . C 3 HOH 3 203 85 HOH HOH D . C 3 HOH 4 204 90 HOH HOH D . C 3 HOH 5 205 91 HOH HOH D . C 3 HOH 6 206 86 HOH HOH D . C 3 HOH 7 207 1 HOH HOH D . C 3 HOH 8 208 87 HOH HOH D . C 3 HOH 9 209 92 HOH HOH D . # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name REFMAC _software.os ? _software.os_version ? _software.type ? _software.version 5.8.0411 _software.pdbx_ordinal 1 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8RC7 _cell.details ? _cell.formula_units_Z ? _cell.length_a 25.800 _cell.length_a_esd ? _cell.length_b 25.800 _cell.length_b_esd ? _cell.length_c 21.490 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8RC7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8RC7 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.78 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 30.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method ? _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Urea, HCl, 95% Ethanol' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.diffrn_id 1 _diffrn_detector.type CUSTOM-MADE _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 1978-01-01 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5406 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type ? _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5406 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8RC7 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.98 _reflns.d_resolution_low 22.34 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4028 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 81.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 210 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _refine.aniso_B[1][1] 0.064 _refine.aniso_B[1][2] 0.032 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][2] 0.064 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] -0.208 _refine.B_iso_max ? _refine.B_iso_mean 8.880 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.978 _refine.correlation_coeff_Fo_to_Fc_free 0.988 _refine.details ;Hydrogens have been added in their riding positions. At this resolution the FreeR is often equal to the overall R factor ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8RC7 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.980 _refine.ls_d_res_low 22.34 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4028 _refine.ls_number_reflns_R_free 205 _refine.ls_number_reflns_R_work 3823 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 80.738 _refine.ls_percent_reflns_R_free 5.089 _refine.ls_R_factor_all 0.140 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.1318 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1400 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.026 _refine.pdbx_overall_ESU_R_Free 0.023 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.276 _refine.overall_SU_ML 0.015 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 82 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 95 _refine_hist.d_res_high 0.980 _refine_hist.d_res_low 22.34 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.021 0.012 97 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.004 0.015 103 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.196 1.624 134 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.881 1.564 238 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 7.751 5.000 12 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 9.574 10.000 15 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 23.292 10.000 2 ? r_dihedral_angle_6_deg ? ? 'X-RAY DIFFRACTION' ? 1.735 0.200 16 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.013 0.020 104 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 20 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.244 0.200 9 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.204 0.200 73 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.221 0.200 42 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.168 0.200 60 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.119 0.200 3 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.114 0.200 12 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.118 0.200 3 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 1.023 0.620 46 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.020 0.620 45 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 1.336 1.126 58 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 1.332 1.122 59 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.916 0.965 51 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.927 0.980 50 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 4.176 1.583 76 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 4.228 1.597 74 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.488 8.265 87 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 4.540 8.032 87 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 0.980 1.005 354 . 7 141 41.8079 . 0.159 . . 0.160 . . . . . 0.160 . 20 . 0.983 0.983 0.143 'X-RAY DIFFRACTION' 1.005 1.033 372 . 8 201 56.1828 . 0.147 . . 0.150 . . . . . 0.150 . 20 . 0.984 0.997 0.095 'X-RAY DIFFRACTION' 1.033 1.063 318 . 17 206 70.1258 . 0.139 . . 0.138 . . . . . 0.138 . 20 . 0.985 0.987 0.144 'X-RAY DIFFRACTION' 1.063 1.095 333 . 12 244 76.8769 . 0.135 . . 0.133 . . . . . 0.133 . 20 . 0.988 0.978 0.174 'X-RAY DIFFRACTION' 1.095 1.131 329 . 6 248 77.2037 . 0.145 . . 0.145 . . . . . 0.145 . 20 . 0.986 0.974 0.152 'X-RAY DIFFRACTION' 1.131 1.171 310 . 17 229 79.3548 . 0.135 . . 0.137 . . . . . 0.137 . 20 . 0.988 0.990 0.116 'X-RAY DIFFRACTION' 1.171 1.215 308 . 13 233 79.8701 . 0.154 . . 0.151 . . . . . 0.151 . 20 . 0.985 0.967 0.214 'X-RAY DIFFRACTION' 1.215 1.264 285 . 13 224 83.1579 . 0.142 . . 0.142 . . . . . 0.142 . 20 . 0.986 0.986 0.140 'X-RAY DIFFRACTION' 1.264 1.320 279 . 14 225 85.6631 . 0.141 . . 0.137 . . . . . 0.137 . 20 . 0.988 0.964 0.204 'X-RAY DIFFRACTION' 1.320 1.384 271 . 9 226 86.7159 . 0.138 . . 0.138 . . . . . 0.138 . 20 . 0.986 0.992 0.127 'X-RAY DIFFRACTION' 1.384 1.459 266 . 10 225 88.3459 . 0.140 . . 0.140 . . . . . 0.140 . 20 . 0.986 0.990 0.134 'X-RAY DIFFRACTION' 1.459 1.547 240 . 7 215 92.5000 . 0.147 . . 0.149 . . . . . 0.149 . 20 . 0.986 0.992 0.113 'X-RAY DIFFRACTION' 1.547 1.653 233 . 19 194 91.4163 . 0.164 . . 0.163 . . . . . 0.163 . 20 . 0.983 0.983 0.181 'X-RAY DIFFRACTION' 1.653 1.785 214 . 12 191 94.8598 . 0.133 . . 0.132 . . . . . 0.132 . 20 . 0.989 0.992 0.151 'X-RAY DIFFRACTION' 1.785 1.954 199 . 15 179 97.4874 . 0.123 . . 0.124 . . . . . 0.124 . 20 . 0.988 0.993 0.112 'X-RAY DIFFRACTION' 1.954 2.183 185 . 5 177 98.3784 . 0.116 . . 0.119 . . . . . 0.119 . 20 . 0.992 1.000 0.033 'X-RAY DIFFRACTION' 2.183 2.516 163 . 9 151 98.1595 . 0.139 . . 0.143 . . . . . 0.143 . 20 . 0.988 0.997 0.089 'X-RAY DIFFRACTION' 2.516 3.072 145 . 5 138 98.6207 . 0.145 . . 0.142 . . . . . 0.142 . 20 . 0.987 0.992 0.205 'X-RAY DIFFRACTION' 3.072 4.304 113 . 5 108 100.0000 . 0.125 . . 0.126 . . . . . 0.126 . 20 . 0.989 0.997 0.105 'X-RAY DIFFRACTION' 4.304 22.343 73 . 2 69 97.2603 . 0.169 . . 0.170 . . . . . 0.170 . 20 . 0.984 0.998 0.145 # _struct.entry_id 8RC7 _struct.title 'The structure of membrane-active antibiotic cyclodecapeptide gramicidin S in complex with urea' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8RC7 _struct_keywords.text 'A cyclic decapeptide, ANTIBIOTIC' _struct_keywords.pdbx_keywords ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8RC7 _struct_ref.pdbx_db_accession 8RC7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8RC7 _struct_ref_seq.pdbx_strand_id D _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8RC7 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 1390 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A VAL 1 C A ? ? 1_555 A ORN 2 N ? ? D VAL 1 D ORN 2 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale2 covale both ? A VAL 1 C B ? ? 1_555 A ORN 2 N ? ? D VAL 1 D ORN 2 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale3 covale both ? A VAL 1 N A ? ? 1_555 A PRO 10 C ? ? D VAL 1 D PRO 10 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale4 covale both ? A VAL 1 N B ? ? 1_555 A PRO 10 C ? ? D VAL 1 D PRO 10 1_555 ? ? ? ? ? ? ? 1.289 ? ? covale5 covale both ? A ORN 2 C ? ? ? 1_555 A LEU 3 N ? ? D ORN 2 D LEU 3 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale6 covale both ? A LEU 3 C ? ? ? 1_555 A DPN 4 N ? ? D LEU 3 D DPN 4 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale7 covale both ? A DPN 4 C ? ? ? 1_555 A PRO 5 N ? ? D DPN 4 D PRO 5 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale8 covale both ? A VAL 6 C ? ? ? 1_555 A ORN 7 N ? ? D VAL 6 D ORN 7 1_555 ? ? ? ? ? ? ? 1.295 ? ? covale9 covale both ? A ORN 7 C ? ? ? 1_555 A LEU 8 N ? ? D ORN 7 D LEU 8 1_555 ? ? ? ? ? ? ? 1.306 ? ? covale10 covale both ? A LEU 8 C ? ? ? 1_555 A DPN 9 N ? ? D LEU 8 D DPN 9 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale11 covale both ? A DPN 9 C ? ? ? 1_555 A PRO 10 N ? ? D DPN 9 D PRO 10 1_555 ? ? ? ? ? ? ? 1.336 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ORN A 2 ? LEU A 3 ? ORN D 2 LEU D 3 AA1 2 VAL A 6 ? ORN A 7 ? VAL D 6 ORN D 7 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id LEU _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 3 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id LEU _pdbx_struct_sheet_hbond.range_1_auth_asym_id D _pdbx_struct_sheet_hbond.range_1_auth_seq_id 3 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 6 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id D _pdbx_struct_sheet_hbond.range_2_auth_seq_id 6 # _pdbx_molecule_features.prd_id PRD_000219 _pdbx_molecule_features.name 'GRAMICIDIN S' _pdbx_molecule_features.type 'Cyclic peptide' _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;GRAMICIDIN S IS A DECAPEPTIDE, RESIDUES 1 AND 10 FORM A PEPTIDE BOND RESULTING IN CYCLIZATION. ; # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000219 _pdbx_molecule.asym_id A # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 D URE 101 ? B URE . 2 1 D URE 101 ? B URE . 3 1 D HOH 206 ? C HOH . 4 1 D HOH 207 ? C HOH . # _pdbx_entry_details.entry_id 8RC7 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ;GRAMICIDIN S IS A CYCLODECAPEPTIDE, CONSTRUCTED AS TWO IDENTICAL PENTAPEPTIDES JOINED HEAD TO TAIL, PRODUCED BY THE GRAM POSITIVE BACTERIUM BACILLUS BREVIS HERE, GRAMICIDIN S IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DPN N N N N 1 DPN CA C N R 2 DPN C C N N 3 DPN O O N N 4 DPN OXT O N N 5 DPN CB C N N 6 DPN CG C Y N 7 DPN CD1 C Y N 8 DPN CD2 C Y N 9 DPN CE1 C Y N 10 DPN CE2 C Y N 11 DPN CZ C Y N 12 DPN H H N N 13 DPN H2 H N N 14 DPN HA H N N 15 DPN HXT H N N 16 DPN HB2 H N N 17 DPN HB3 H N N 18 DPN HD1 H N N 19 DPN HD2 H N N 20 DPN HE1 H N N 21 DPN HE2 H N N 22 DPN HZ H N N 23 HOH O O N N 24 HOH H1 H N N 25 HOH H2 H N N 26 LEU N N N N 27 LEU CA C N S 28 LEU C C N N 29 LEU O O N N 30 LEU CB C N N 31 LEU CG C N N 32 LEU CD1 C N N 33 LEU CD2 C N N 34 LEU OXT O N N 35 LEU H H N N 36 LEU H2 H N N 37 LEU HA H N N 38 LEU HB2 H N N 39 LEU HB3 H N N 40 LEU HG H N N 41 LEU HD11 H N N 42 LEU HD12 H N N 43 LEU HD13 H N N 44 LEU HD21 H N N 45 LEU HD22 H N N 46 LEU HD23 H N N 47 LEU HXT H N N 48 ORN N N N N 49 ORN CA C N S 50 ORN CB C N N 51 ORN CG C N N 52 ORN CD C N N 53 ORN NE N N N 54 ORN C C N N 55 ORN O O N N 56 ORN OXT O N N 57 ORN H H N N 58 ORN H2 H N N 59 ORN HA H N N 60 ORN HB2 H N N 61 ORN HB3 H N N 62 ORN HG2 H N N 63 ORN HG3 H N N 64 ORN HD2 H N N 65 ORN HD3 H N N 66 ORN HE1 H N N 67 ORN HE2 H N N 68 ORN HXT H N N 69 PRO N N N N 70 PRO CA C N S 71 PRO C C N N 72 PRO O O N N 73 PRO CB C N N 74 PRO CG C N N 75 PRO CD C N N 76 PRO OXT O N N 77 PRO H H N N 78 PRO HA H N N 79 PRO HB2 H N N 80 PRO HB3 H N N 81 PRO HG2 H N N 82 PRO HG3 H N N 83 PRO HD2 H N N 84 PRO HD3 H N N 85 PRO HXT H N N 86 URE C C N N 87 URE O O N N 88 URE N1 N N N 89 URE N2 N N N 90 URE HN11 H N N 91 URE HN12 H N N 92 URE HN21 H N N 93 URE HN22 H N N 94 VAL N N N N 95 VAL CA C N S 96 VAL C C N N 97 VAL O O N N 98 VAL CB C N N 99 VAL CG1 C N N 100 VAL CG2 C N N 101 VAL OXT O N N 102 VAL H H N N 103 VAL H2 H N N 104 VAL HA H N N 105 VAL HB H N N 106 VAL HG11 H N N 107 VAL HG12 H N N 108 VAL HG13 H N N 109 VAL HG21 H N N 110 VAL HG22 H N N 111 VAL HG23 H N N 112 VAL HXT H N N 113 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DPN N CA sing N N 1 DPN N H sing N N 2 DPN N H2 sing N N 3 DPN CA C sing N N 4 DPN CA CB sing N N 5 DPN CA HA sing N N 6 DPN C O doub N N 7 DPN C OXT sing N N 8 DPN OXT HXT sing N N 9 DPN CB CG sing N N 10 DPN CB HB2 sing N N 11 DPN CB HB3 sing N N 12 DPN CG CD1 doub Y N 13 DPN CG CD2 sing Y N 14 DPN CD1 CE1 sing Y N 15 DPN CD1 HD1 sing N N 16 DPN CD2 CE2 doub Y N 17 DPN CD2 HD2 sing N N 18 DPN CE1 CZ doub Y N 19 DPN CE1 HE1 sing N N 20 DPN CE2 CZ sing Y N 21 DPN CE2 HE2 sing N N 22 DPN CZ HZ sing N N 23 HOH O H1 sing N N 24 HOH O H2 sing N N 25 LEU N CA sing N N 26 LEU N H sing N N 27 LEU N H2 sing N N 28 LEU CA C sing N N 29 LEU CA CB sing N N 30 LEU CA HA sing N N 31 LEU C O doub N N 32 LEU C OXT sing N N 33 LEU CB CG sing N N 34 LEU CB HB2 sing N N 35 LEU CB HB3 sing N N 36 LEU CG CD1 sing N N 37 LEU CG CD2 sing N N 38 LEU CG HG sing N N 39 LEU CD1 HD11 sing N N 40 LEU CD1 HD12 sing N N 41 LEU CD1 HD13 sing N N 42 LEU CD2 HD21 sing N N 43 LEU CD2 HD22 sing N N 44 LEU CD2 HD23 sing N N 45 LEU OXT HXT sing N N 46 ORN N CA sing N N 47 ORN N H sing N N 48 ORN N H2 sing N N 49 ORN CA CB sing N N 50 ORN CA C sing N N 51 ORN CA HA sing N N 52 ORN CB CG sing N N 53 ORN CB HB2 sing N N 54 ORN CB HB3 sing N N 55 ORN CG CD sing N N 56 ORN CG HG2 sing N N 57 ORN CG HG3 sing N N 58 ORN CD NE sing N N 59 ORN CD HD2 sing N N 60 ORN CD HD3 sing N N 61 ORN NE HE1 sing N N 62 ORN NE HE2 sing N N 63 ORN C O doub N N 64 ORN C OXT sing N N 65 ORN OXT HXT sing N N 66 PRO N CA sing N N 67 PRO N CD sing N N 68 PRO N H sing N N 69 PRO CA C sing N N 70 PRO CA CB sing N N 71 PRO CA HA sing N N 72 PRO C O doub N N 73 PRO C OXT sing N N 74 PRO CB CG sing N N 75 PRO CB HB2 sing N N 76 PRO CB HB3 sing N N 77 PRO CG CD sing N N 78 PRO CG HG2 sing N N 79 PRO CG HG3 sing N N 80 PRO CD HD2 sing N N 81 PRO CD HD3 sing N N 82 PRO OXT HXT sing N N 83 URE C O doub N N 84 URE C N1 sing N N 85 URE C N2 sing N N 86 URE N1 HN11 sing N N 87 URE N1 HN12 sing N N 88 URE N2 HN21 sing N N 89 URE N2 HN22 sing N N 90 VAL N CA sing N N 91 VAL N H sing N N 92 VAL N H2 sing N N 93 VAL CA C sing N N 94 VAL CA CB sing N N 95 VAL CA HA sing N N 96 VAL C O doub N N 97 VAL C OXT sing N N 98 VAL CB CG1 sing N N 99 VAL CB CG2 sing N N 100 VAL CB HB sing N N 101 VAL CG1 HG11 sing N N 102 VAL CG1 HG12 sing N N 103 VAL CG1 HG13 sing N N 104 VAL CG2 HG21 sing N N 105 VAL CG2 HG22 sing N N 106 VAL CG2 HG23 sing N N 107 VAL OXT HXT sing N N 108 # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 8RC7 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.038760 _atom_sites.fract_transf_matrix[1][2] 0.022378 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.044756 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.046533 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512 H 1 1 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826 O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089 # loop_