HEADER LYASE 15-DEC-23 8RHE TITLE LYTIC TRANSGLYCOSYLASE MLTD OF PSEUDOMONAS AERUGINOSA BOUND TO THE TITLE 2 NATURAL PRODUCT BULGECIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSM PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE D,MUREIN COMPND 5 TRANSGLYCOSYLASE; COMPND 6 EC: 4.2.2.-; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: HISTIDINE TAG AND TEV SITE IN THE N-T REGION. MLTD COMPND 9 CONSTRUCTION FROM 76 TO 393 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: MLTD, CAZ10_25765, CGU42_31890, GNQ48_00460, GUL26_19730, SOURCE 5 IPC1295_05870, PAERUG_P19_LONDON_7_VIM_2_05_10_06006; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS LYTIC TRANSGLYCOSYLASE, BACTERIAL CELL-WALL, BULGECIN A, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR V.MIGUEL-RUANO,J.A.HERMOSO REVDAT 2 24-APR-24 8RHE 1 JRNL REVDAT 1 17-APR-24 8RHE 0 JRNL AUTH V.MIGUEL-RUANO,R.FELTZER,M.T.BATUECAS,B.RAMACHANDRAN, JRNL AUTH 2 A.M.EL-ARABY,L.F.AVILA-COBIAN,S.DE BENEDETTI,S.MOBASHERY, JRNL AUTH 3 J.A.HERMOSO JRNL TITL STRUCTURAL CHARACTERIZATION OF LYTIC TRANSGLYCOSYLASE MLTD JRNL TITL 2 OF PSEUDOMONAS AERUGINOSA, A TARGET FOR THE NATURAL PRODUCT JRNL TITL 3 BULGECIN A. JRNL REF INT.J.BIOL.MACROMOL. V. 267 31420 2024 JRNL REFN ISSN 0141-8130 JRNL PMID 38583835 JRNL DOI 10.1016/J.IJBIOMAC.2024.131420 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.912 REMARK 3 FREE R VALUE TEST SET COUNT : 2194 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3017 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4457 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08600 REMARK 3 B22 (A**2) : 0.20200 REMARK 3 B33 (A**2) : -0.11600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.355 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4720 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4358 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6438 ; 1.051 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9999 ; 0.359 ; 1.567 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 568 ; 5.687 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 47 ; 6.381 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 758 ;15.123 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 697 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5683 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1177 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1083 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 116 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2337 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 225 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.118 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2256 ; 2.013 ; 3.437 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2257 ; 2.012 ; 3.437 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2828 ; 3.274 ; 6.161 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2829 ; 3.273 ; 6.161 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2464 ; 2.456 ; 3.770 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2462 ; 2.453 ; 3.770 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3610 ; 4.133 ; 6.763 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3611 ; 4.133 ; 6.763 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 62 A 338 NULL REMARK 3 1 A 62 A 338 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3910 18.6329 11.5597 REMARK 3 T TENSOR REMARK 3 T11: 0.0431 T22: 0.0396 REMARK 3 T33: 0.0583 T12: -0.0127 REMARK 3 T13: -0.0053 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 0.4317 L22: 0.3113 REMARK 3 L33: 0.5189 L12: 0.0045 REMARK 3 L13: -0.0123 L23: 0.1441 REMARK 3 S TENSOR REMARK 3 S11: 0.0334 S12: -0.0128 S13: -0.0263 REMARK 3 S21: 0.0221 S22: -0.0275 S23: 0.0171 REMARK 3 S31: -0.0675 S32: 0.0456 S33: -0.0059 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 11.4698 -4.1083 28.5035 REMARK 3 T TENSOR REMARK 3 T11: 0.1633 T22: 0.0621 REMARK 3 T33: 0.1257 T12: 0.0294 REMARK 3 T13: 0.0852 T23: 0.0615 REMARK 3 L TENSOR REMARK 3 L11: 0.5461 L22: 0.8784 REMARK 3 L33: 2.0047 L12: 0.0152 REMARK 3 L13: -0.9281 L23: -0.4624 REMARK 3 S TENSOR REMARK 3 S11: -0.2557 S12: 0.0051 S13: -0.0644 REMARK 3 S21: -0.1035 S22: 0.0154 S23: -0.0494 REMARK 3 S31: 0.5173 S32: -0.0152 S33: 0.2402 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8RHE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1292135386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49604 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 42.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.264 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 25% W/V PEG 550 MME, REMARK 280 AND 10 MM ZINC SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.61200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.42900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.70400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.42900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.61200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.70400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 56 REMARK 465 GLY A 57 REMARK 465 SER A 58 REMARK 465 SER A 59 REMARK 465 HIS A 60 REMARK 465 HIS A 61 REMARK 465 THR A 339 REMARK 465 LEU A 340 REMARK 465 LYS A 341 REMARK 465 PRO A 342 REMARK 465 LYS A 343 REMARK 465 GLU A 344 REMARK 465 VAL A 345 REMARK 465 THR A 346 REMARK 465 ALA A 347 REMARK 465 TRP A 348 REMARK 465 GLN A 349 REMARK 465 GLN A 350 REMARK 465 TYR A 351 REMARK 465 ARG A 352 REMARK 465 VAL A 353 REMARK 465 ARG A 354 REMARK 465 SER A 355 REMARK 465 GLY A 356 REMARK 465 ASP A 357 REMARK 465 SER A 358 REMARK 465 LEU A 359 REMARK 465 HIS A 360 REMARK 465 SER A 361 REMARK 465 ILE A 362 REMARK 465 ALA A 363 REMARK 465 ASN A 364 REMARK 465 ARG A 365 REMARK 465 TYR A 366 REMARK 465 ARG A 367 REMARK 465 ILE A 368 REMARK 465 THR A 369 REMARK 465 VAL A 370 REMARK 465 ALA A 371 REMARK 465 GLU A 372 REMARK 465 LEU A 373 REMARK 465 LYS A 374 REMARK 465 SER A 375 REMARK 465 ALA A 376 REMARK 465 ASN A 377 REMARK 465 ARG A 378 REMARK 465 LEU A 379 REMARK 465 SER A 380 REMARK 465 SER A 381 REMARK 465 ASN A 382 REMARK 465 HIS A 383 REMARK 465 LEU A 384 REMARK 465 ARG A 385 REMARK 465 LYS A 386 REMARK 465 GLY A 387 REMARK 465 GLN A 388 REMARK 465 GLN A 389 REMARK 465 LEU A 390 REMARK 465 SER A 391 REMARK 465 ILE A 392 REMARK 465 PRO A 393 REMARK 465 MET B 56 REMARK 465 GLY B 57 REMARK 465 SER B 58 REMARK 465 SER B 59 REMARK 465 HIS B 60 REMARK 465 HIS B 61 REMARK 465 SER B 66 REMARK 465 SER B 67 REMARK 465 LEU B 340 REMARK 465 LYS B 341 REMARK 465 PRO B 342 REMARK 465 LYS B 343 REMARK 465 GLU B 344 REMARK 465 VAL B 345 REMARK 465 THR B 346 REMARK 465 ALA B 347 REMARK 465 TRP B 348 REMARK 465 GLN B 349 REMARK 465 GLN B 350 REMARK 465 TYR B 351 REMARK 465 ARG B 352 REMARK 465 VAL B 353 REMARK 465 ARG B 354 REMARK 465 SER B 355 REMARK 465 GLY B 356 REMARK 465 ASP B 357 REMARK 465 SER B 358 REMARK 465 LEU B 359 REMARK 465 HIS B 360 REMARK 465 SER B 361 REMARK 465 ILE B 362 REMARK 465 ALA B 363 REMARK 465 ASN B 364 REMARK 465 ARG B 365 REMARK 465 TYR B 366 REMARK 465 ARG B 367 REMARK 465 ILE B 368 REMARK 465 THR B 369 REMARK 465 VAL B 370 REMARK 465 ALA B 371 REMARK 465 GLU B 372 REMARK 465 LEU B 373 REMARK 465 LYS B 374 REMARK 465 SER B 375 REMARK 465 ALA B 376 REMARK 465 ASN B 377 REMARK 465 ARG B 378 REMARK 465 LEU B 379 REMARK 465 SER B 380 REMARK 465 SER B 381 REMARK 465 ASN B 382 REMARK 465 HIS B 383 REMARK 465 LEU B 384 REMARK 465 ARG B 385 REMARK 465 LYS B 386 REMARK 465 GLY B 387 REMARK 465 GLN B 388 REMARK 465 GLN B 389 REMARK 465 LEU B 390 REMARK 465 SER B 391 REMARK 465 ILE B 392 REMARK 465 PRO B 393 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 74 O HOH A 501 2.00 REMARK 500 OE1 GLU B 218 O HOH B 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 203 41.87 -108.80 REMARK 500 TYR B 72 46.06 -93.85 REMARK 500 SER B 91 -167.54 -108.30 REMARK 500 ASP B 318 -0.14 64.81 REMARK 500 GLN B 321 55.17 72.49 REMARK 500 ASP B 338 45.65 -102.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 313 0.10 SIDE CHAIN REMARK 500 ARG B 95 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 62 NE2 REMARK 620 2 HIS A 64 NE2 117.8 REMARK 620 3 HOH A 636 O 106.0 113.8 REMARK 620 4 HIS B 170 NE2 90.7 111.7 114.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 NE2 REMARK 620 2 HIS A 65 NE2 110.2 REMARK 620 3 ASP A 82 OD1 116.8 119.2 REMARK 620 4 ASP A 82 OD2 93.2 86.7 55.4 REMARK 620 5 ASP A 318 OD1 93.8 67.8 72.6 19.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 170 NE2 REMARK 620 2 HIS B 62 ND1 87.0 REMARK 620 3 HIS B 64 NE2 104.5 113.7 REMARK 620 4 HOH B 575 O 114.8 113.1 119.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 197 OE2 REMARK 620 2 ASP A 201 OD1 90.3 REMARK 620 3 ASP A 201 OD2 117.2 57.5 REMARK 620 4 GLU B 197 OE2 107.8 153.2 96.2 REMARK 620 5 ASP B 201 OD1 148.2 80.2 83.0 93.0 REMARK 620 6 ASP B 201 OD2 91.4 78.5 125.3 119.4 57.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 63 ND1 REMARK 620 2 ASP B 82 OD2 116.8 REMARK 620 N 1 DBREF1 8RHE A 76 393 UNP A0A0C7CWY9_PSEAI DBREF2 8RHE A A0A0C7CWY9 76 393 DBREF1 8RHE B 76 393 UNP A0A0C7CWY9_PSEAI DBREF2 8RHE B A0A0C7CWY9 76 393 SEQADV 8RHE MET A 56 UNP A0A0C7CWY INITIATING METHIONINE SEQADV 8RHE GLY A 57 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE SER A 58 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE SER A 59 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE HIS A 60 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE HIS A 61 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE HIS A 62 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE HIS A 63 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE HIS A 64 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE HIS A 65 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE SER A 66 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE SER A 67 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE GLY A 68 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE GLU A 69 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE ASN A 70 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE LEU A 71 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE TYR A 72 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE PHE A 73 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE GLN A 74 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE GLY A 75 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE MET B 56 UNP A0A0C7CWY INITIATING METHIONINE SEQADV 8RHE GLY B 57 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE SER B 58 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE SER B 59 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE HIS B 60 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE HIS B 61 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE HIS B 62 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE HIS B 63 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE HIS B 64 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE HIS B 65 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE SER B 66 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE SER B 67 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE GLY B 68 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE GLU B 69 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE ASN B 70 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE LEU B 71 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE TYR B 72 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE PHE B 73 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE GLN B 74 UNP A0A0C7CWY EXPRESSION TAG SEQADV 8RHE GLY B 75 UNP A0A0C7CWY EXPRESSION TAG SEQRES 1 A 338 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 338 GLU ASN LEU TYR PHE GLN GLY ILE TRP ASP ARG MET ARG SEQRES 3 A 338 ASP GLY PHE GLN LEU GLN ASP ALA ILE SER THR ASN PRO SEQRES 4 A 338 ARG ILE GLU ARG GLN ARG LEU TRP PHE LEU SER ASN GLN SEQRES 5 A 338 SER PHE LEU GLU GLN SER SER ALA ARG GLY SER LEU TYR SEQRES 6 A 338 MET HIS TYR VAL VAL GLU ARG LEU GLU GLU ARG ASN MET SEQRES 7 A 338 PRO LEU GLU LEU ALA LEU LEU PRO VAL ILE GLU SER ALA SEQRES 8 A 338 TYR ASN PRO PHE ALA LEU SER ARG SER ASN ALA ALA GLY SEQRES 9 A 338 LEU TRP GLN PHE ILE PRO ALA THR GLY GLN HIS PHE ASN SEQRES 10 A 338 LEU ARG GLN THR ASN PHE TYR ASP GLY ARG ARG ASP ILE SEQRES 11 A 338 THR ALA SER THR ASN ALA ALA LEU THR TYR LEU GLU ARG SEQRES 12 A 338 LEU HIS ASP MET PHE ASN GLY ASP TRP MET LEU ALA LEU SEQRES 13 A 338 ALA ALA TYR ASN ALA GLY GLU GLY THR VAL SER ARG ALA SEQRES 14 A 338 ILE GLU ARG ASN GLU LYS LEU GLY LEU PRO THR ASP TYR SEQRES 15 A 338 TRP ASN LEU PRO LEU PRO GLN GLU THR GLN ASP TYR VAL SEQRES 16 A 338 PRO LYS LEU LEU ALA LEU SER GLN ILE VAL MET ALA PRO SEQRES 17 A 338 ASP SER TYR GLY ILE SER LEU ASN PRO ILE ASN ASN GLU SEQRES 18 A 338 PRO TYR PHE GLN ALA VAL ARG VAL LYS ARG GLY ILE ASP SEQRES 19 A 338 LEU SER SER VAL ALA ALA LEU ALA ASN LEU ASP GLU ASP SEQRES 20 A 338 GLU LEU TYR GLN LEU ASN PRO ALA TYR LYS ARG ARG VAL SEQRES 21 A 338 THR MET ASP GLY PRO GLN GLN LEU LEU VAL PRO MET GLU SEQRES 22 A 338 LYS ALA ALA PHE LEU THR ALA SER LEU ASP THR LEU LYS SEQRES 23 A 338 PRO LYS GLU VAL THR ALA TRP GLN GLN TYR ARG VAL ARG SEQRES 24 A 338 SER GLY ASP SER LEU HIS SER ILE ALA ASN ARG TYR ARG SEQRES 25 A 338 ILE THR VAL ALA GLU LEU LYS SER ALA ASN ARG LEU SER SEQRES 26 A 338 SER ASN HIS LEU ARG LYS GLY GLN GLN LEU SER ILE PRO SEQRES 1 B 338 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 338 GLU ASN LEU TYR PHE GLN GLY ILE TRP ASP ARG MET ARG SEQRES 3 B 338 ASP GLY PHE GLN LEU GLN ASP ALA ILE SER THR ASN PRO SEQRES 4 B 338 ARG ILE GLU ARG GLN ARG LEU TRP PHE LEU SER ASN GLN SEQRES 5 B 338 SER PHE LEU GLU GLN SER SER ALA ARG GLY SER LEU TYR SEQRES 6 B 338 MET HIS TYR VAL VAL GLU ARG LEU GLU GLU ARG ASN MET SEQRES 7 B 338 PRO LEU GLU LEU ALA LEU LEU PRO VAL ILE GLU SER ALA SEQRES 8 B 338 TYR ASN PRO PHE ALA LEU SER ARG SER ASN ALA ALA GLY SEQRES 9 B 338 LEU TRP GLN PHE ILE PRO ALA THR GLY GLN HIS PHE ASN SEQRES 10 B 338 LEU ARG GLN THR ASN PHE TYR ASP GLY ARG ARG ASP ILE SEQRES 11 B 338 THR ALA SER THR ASN ALA ALA LEU THR TYR LEU GLU ARG SEQRES 12 B 338 LEU HIS ASP MET PHE ASN GLY ASP TRP MET LEU ALA LEU SEQRES 13 B 338 ALA ALA TYR ASN ALA GLY GLU GLY THR VAL SER ARG ALA SEQRES 14 B 338 ILE GLU ARG ASN GLU LYS LEU GLY LEU PRO THR ASP TYR SEQRES 15 B 338 TRP ASN LEU PRO LEU PRO GLN GLU THR GLN ASP TYR VAL SEQRES 16 B 338 PRO LYS LEU LEU ALA LEU SER GLN ILE VAL MET ALA PRO SEQRES 17 B 338 ASP SER TYR GLY ILE SER LEU ASN PRO ILE ASN ASN GLU SEQRES 18 B 338 PRO TYR PHE GLN ALA VAL ARG VAL LYS ARG GLY ILE ASP SEQRES 19 B 338 LEU SER SER VAL ALA ALA LEU ALA ASN LEU ASP GLU ASP SEQRES 20 B 338 GLU LEU TYR GLN LEU ASN PRO ALA TYR LYS ARG ARG VAL SEQRES 21 B 338 THR MET ASP GLY PRO GLN GLN LEU LEU VAL PRO MET GLU SEQRES 22 B 338 LYS ALA ALA PHE LEU THR ALA SER LEU ASP THR LEU LYS SEQRES 23 B 338 PRO LYS GLU VAL THR ALA TRP GLN GLN TYR ARG VAL ARG SEQRES 24 B 338 SER GLY ASP SER LEU HIS SER ILE ALA ASN ARG TYR ARG SEQRES 25 B 338 ILE THR VAL ALA GLU LEU LYS SER ALA ASN ARG LEU SER SEQRES 26 B 338 SER ASN HIS LEU ARG LYS GLY GLN GLN LEU SER ILE PRO HET BLG A 401 35 HET ZN A 402 1 HET ZN A 403 1 HET BLG B 401 35 HET ZN B 402 1 HET ZN B 403 1 HET ZN B 404 1 HETNAM BLG 4-O-(4-O-SULFONYL-N-ACETYLGLUCOSAMININYL)-5- HETNAM 2 BLG METHYLHYDROXY-L-PROLINE-TAURINE HETNAM ZN ZINC ION HETSYN BLG BULGECIN A FORMUL 3 BLG 2(C16 H30 N3 O14 S2 1+) FORMUL 4 ZN 5(ZN 2+) FORMUL 10 HOH *239(H2 O) HELIX 1 AA1 SER A 66 LEU A 71 1 6 HELIX 2 AA2 GLY A 75 GLY A 83 1 9 HELIX 3 AA3 ASN A 93 ASN A 106 1 14 HELIX 4 AA4 ASN A 106 SER A 118 1 13 HELIX 5 AA5 TYR A 120 ARG A 131 1 12 HELIX 6 AA6 PRO A 134 ALA A 138 5 5 HELIX 7 AA7 LEU A 139 ALA A 146 1 8 HELIX 8 AA8 ILE A 164 PHE A 171 1 8 HELIX 9 AA9 ASP A 184 PHE A 203 1 20 HELIX 10 AB1 ASP A 206 GLY A 217 1 12 HELIX 11 AB2 GLY A 217 GLY A 232 1 16 HELIX 12 AB3 ASP A 236 LEU A 240 5 5 HELIX 13 AB4 PRO A 243 ALA A 262 1 20 HELIX 14 AB5 PRO A 263 GLY A 267 5 5 HELIX 15 AB6 ASP A 289 ASN A 298 1 10 HELIX 16 AB7 ASP A 300 ASN A 308 1 9 HELIX 17 AB8 TYR A 311 VAL A 315 5 5 HELIX 18 AB9 MET A 327 ASP A 338 1 12 HELIX 19 AC1 GLY B 68 TYR B 72 5 5 HELIX 20 AC2 GLY B 75 GLY B 83 1 9 HELIX 21 AC3 ASN B 93 ASN B 106 1 14 HELIX 22 AC4 GLN B 107 SER B 118 1 12 HELIX 23 AC5 TYR B 120 ARG B 131 1 12 HELIX 24 AC6 PRO B 134 ALA B 138 5 5 HELIX 25 AC7 LEU B 139 ALA B 146 1 8 HELIX 26 AC8 ILE B 164 PHE B 171 1 8 HELIX 27 AC9 ASP B 184 PHE B 203 1 20 HELIX 28 AD1 ASP B 206 GLY B 217 1 12 HELIX 29 AD2 GLY B 217 GLY B 232 1 16 HELIX 30 AD3 ASP B 236 LEU B 240 5 5 HELIX 31 AD4 PRO B 243 ALA B 262 1 20 HELIX 32 AD5 PRO B 263 GLY B 267 5 5 HELIX 33 AD6 ASP B 289 ALA B 297 1 9 HELIX 34 AD7 ASP B 300 ASN B 308 1 9 HELIX 35 AD8 LYS B 329 LEU B 337 1 9 SHEET 1 AA1 2 PHE A 279 ARG A 283 0 SHEET 2 AA1 2 GLN A 322 PRO A 326 -1 O LEU A 323 N VAL A 282 SHEET 1 AA2 2 PHE B 279 ARG B 283 0 SHEET 2 AA2 2 GLN B 322 PRO B 326 -1 O LEU B 323 N VAL B 282 LINK NE2 HIS A 62 ZN ZN A 402 1555 1555 2.08 LINK NE2 HIS A 63 ZN ZN A 403 1555 1555 1.89 LINK NE2 HIS A 64 ZN ZN A 402 1555 1555 1.90 LINK NE2 HIS A 65 ZN ZN A 403 1555 1555 2.02 LINK OD1 ASP A 82 ZN ZN A 403 1555 1555 1.96 LINK OD2 ASP A 82 ZN ZN A 403 1555 1555 2.64 LINK NE2 HIS A 170 ZN ZN B 403 1555 1555 2.09 LINK OE2 GLU A 197 ZN ZN B 402 1555 1555 2.03 LINK OD1 ASP A 201 ZN ZN B 402 1555 1555 2.53 LINK OD2 ASP A 201 ZN ZN B 402 1555 1555 1.92 LINK OD1 ASP A 318 ZN ZN A 403 1555 1655 2.09 LINK ZN ZN A 402 O HOH A 636 1555 1555 2.34 LINK ZN ZN A 402 NE2 HIS B 170 1555 1555 2.29 LINK ND1 HIS B 62 ZN ZN B 403 1555 1555 2.34 LINK ND1 HIS B 63 ZN ZN B 404 1555 1555 2.52 LINK NE2 HIS B 64 ZN ZN B 403 1555 1555 1.93 LINK OD2 ASP B 82 ZN ZN B 404 1555 1555 2.14 LINK OE2 GLU B 197 ZN ZN B 402 1555 1555 1.92 LINK OD1 ASP B 201 ZN ZN B 402 1555 1555 2.50 LINK OD2 ASP B 201 ZN ZN B 402 1555 1555 2.04 LINK ZN ZN B 403 O HOH B 575 1555 1555 2.22 CRYST1 45.224 113.408 116.858 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022112 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008818 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008557 0.00000