HEADER TRANSFERASE 18-DEC-23 8RI0 TITLE CRYSTAL STRUCTURE OF TM1570 DOMAIN FROM CALDITERRIVIBRIO NITROREDUCENS TITLE 2 IN COMPLEX WITH S-ADENOSYL-L-METHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDITERRIVIBRIO NITROREDUCENS DSM 19672; SOURCE 3 ORGANISM_TAXID: 768670; SOURCE 4 GENE: TRMD, CALNI_2012; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRMD-TM1570, TM1570, KNOTTED PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KLUZA,I.LEWANDOWSKA,J.SULKOWSKA REVDAT 1 10-JAN-24 8RI0 0 JRNL AUTH J.SULKOWSKA JRNL TITL ARE THERE DOUBLE KNOTS IN PROTEINS? PREDICTION AND IN VITRO JRNL TITL 2 VERIFICATION BASED ON TRMD-TM1570 FUSION FROM C. JRNL TITL 3 NITROREDUCENS. TO BE PUBLISHED JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 26122 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.650 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.6600 - 4.6900 0.98 1786 148 0.1831 0.2010 REMARK 3 2 4.6900 - 3.7300 0.95 1682 139 0.1618 0.2086 REMARK 3 3 3.7300 - 3.2600 0.99 1743 144 0.1882 0.2615 REMARK 3 4 3.2600 - 2.9600 0.98 1716 142 0.2071 0.2555 REMARK 3 5 2.9600 - 2.7500 0.98 1723 143 0.2132 0.2739 REMARK 3 6 2.7500 - 2.5900 0.99 1708 142 0.2107 0.2361 REMARK 3 7 2.5900 - 2.4600 0.99 1752 145 0.2199 0.2740 REMARK 3 8 2.4600 - 2.3500 1.00 1712 142 0.2312 0.2705 REMARK 3 9 2.3500 - 2.2600 0.98 1718 143 0.2409 0.2889 REMARK 3 10 2.2600 - 2.1800 0.99 1707 141 0.2497 0.2883 REMARK 3 11 2.1800 - 2.1100 0.99 1723 142 0.2869 0.3135 REMARK 3 12 2.1100 - 2.0500 0.99 1722 144 0.3163 0.3811 REMARK 3 13 2.0500 - 2.0000 0.99 1700 140 0.3413 0.3880 REMARK 3 14 2.0000 - 1.9500 0.99 1731 144 0.3763 0.4439 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.278 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.331 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2677 REMARK 3 ANGLE : 0.945 3656 REMARK 3 CHIRALITY : 0.060 440 REMARK 3 PLANARITY : 0.006 460 REMARK 3 DIHEDRAL : 17.927 945 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 296) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2113 0.1955 27.7894 REMARK 3 T TENSOR REMARK 3 T11: 0.4927 T22: 0.4072 REMARK 3 T33: 0.3560 T12: -0.0006 REMARK 3 T13: 0.0660 T23: -0.1164 REMARK 3 L TENSOR REMARK 3 L11: 2.2578 L22: 3.2357 REMARK 3 L33: 7.1203 L12: -0.3713 REMARK 3 L13: 2.0108 L23: 1.8146 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: -0.4161 S13: 0.3275 REMARK 3 S21: 0.2098 S22: -0.1162 S23: 0.1322 REMARK 3 S31: -0.3402 S32: -0.5507 S33: 0.0656 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4693 -5.8977 29.3646 REMARK 3 T TENSOR REMARK 3 T11: 0.6247 T22: 0.6074 REMARK 3 T33: 0.4070 T12: -0.0074 REMARK 3 T13: 0.1371 T23: -0.0654 REMARK 3 L TENSOR REMARK 3 L11: 2.3891 L22: 2.8488 REMARK 3 L33: 2.1911 L12: -0.1526 REMARK 3 L13: 1.0161 L23: 0.0996 REMARK 3 S TENSOR REMARK 3 S11: -0.0970 S12: -0.5443 S13: -0.0686 REMARK 3 S21: 0.1429 S22: 0.0727 S23: 0.3685 REMARK 3 S31: 0.0745 S32: -0.4994 S33: 0.0523 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 395 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7845 -12.9787 23.4661 REMARK 3 T TENSOR REMARK 3 T11: 0.4804 T22: 0.3326 REMARK 3 T33: 0.2673 T12: -0.0270 REMARK 3 T13: 0.0617 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 7.2191 L22: 6.1812 REMARK 3 L33: 4.2554 L12: 0.3458 REMARK 3 L13: -1.1790 L23: -0.6773 REMARK 3 S TENSOR REMARK 3 S11: -0.0537 S12: -0.3837 S13: -0.2637 REMARK 3 S21: 0.0640 S22: -0.1653 S23: -0.1624 REMARK 3 S31: 0.7344 S32: 0.2487 S33: 0.1456 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 247 THROUGH 296) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1830 -0.3694 12.5079 REMARK 3 T TENSOR REMARK 3 T11: 0.2484 T22: 0.3173 REMARK 3 T33: 0.3746 T12: -0.0046 REMARK 3 T13: 0.0232 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 3.3621 L22: 7.0447 REMARK 3 L33: 6.6747 L12: 0.2066 REMARK 3 L13: -1.0724 L23: -3.1102 REMARK 3 S TENSOR REMARK 3 S11: 0.0942 S12: -0.2096 S13: 0.3325 REMARK 3 S21: 0.4741 S22: -0.0938 S23: -0.1654 REMARK 3 S31: -0.3812 S32: 0.1505 S33: 0.0132 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 297 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9427 -5.6802 7.3856 REMARK 3 T TENSOR REMARK 3 T11: 0.3566 T22: 0.3150 REMARK 3 T33: 0.3433 T12: 0.0652 REMARK 3 T13: 0.0696 T23: 0.0405 REMARK 3 L TENSOR REMARK 3 L11: 3.9574 L22: 3.2536 REMARK 3 L33: 3.0385 L12: 0.5505 REMARK 3 L13: 0.9544 L23: 0.7354 REMARK 3 S TENSOR REMARK 3 S11: 0.1440 S12: 0.4045 S13: 0.0730 REMARK 3 S21: -0.0978 S22: -0.0093 S23: -0.2579 REMARK 3 S31: 0.1445 S32: 0.2467 S33: -0.1095 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 395 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9003 -9.2091 9.8882 REMARK 3 T TENSOR REMARK 3 T11: 0.3816 T22: 0.2497 REMARK 3 T33: 0.2602 T12: -0.0040 REMARK 3 T13: -0.0097 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 4.6312 L22: 1.7587 REMARK 3 L33: 5.7853 L12: -0.9616 REMARK 3 L13: -1.2836 L23: 1.5617 REMARK 3 S TENSOR REMARK 3 S11: -0.0790 S12: 0.0337 S13: -0.0345 REMARK 3 S21: -0.2645 S22: 0.0228 S23: 0.1213 REMARK 3 S31: 0.3706 S32: -0.3074 S33: 0.0535 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RI0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1292135434. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26147 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 47.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.310 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.44 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 20 MG/ML TM1570 IN REMARK 280 50 MM HEPES BUFFER PH 7.4, 300 MM NACL, 5% GLYCEROL, WITH REMARK 280 ADDITION OF 5 MM SAM, 5 MM MGCL2, 0.1% DDM. RESERVOIR SOLUTION: REMARK 280 0.1 M TRIS PH 8.5, 20% V/V ETHANOL., VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.92500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.04500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.92500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.04500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 636 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 649 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 654 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 229 REMARK 465 PRO A 230 REMARK 465 HIS A 231 REMARK 465 MET A 232 REMARK 465 GLU A 233 REMARK 465 ASN A 234 REMARK 465 LEU A 235 REMARK 465 TYR A 236 REMARK 465 PHE A 237 REMARK 465 GLN A 238 REMARK 465 GLY A 239 REMARK 465 GLY A 240 REMARK 465 ARG A 241 REMARK 465 GLY A 242 REMARK 465 VAL A 243 REMARK 465 GLN A 244 REMARK 465 ARG A 245 REMARK 465 LYS A 246 REMARK 465 LYS A 312 REMARK 465 GLY A 313 REMARK 465 TYR A 314 REMARK 465 GLY A 315 REMARK 465 ALA A 316 REMARK 465 THR A 317 REMARK 465 TYR A 318 REMARK 465 ASN A 319 REMARK 465 GLU A 320 REMARK 465 ASN A 321 REMARK 465 ARG A 322 REMARK 465 LYS A 323 REMARK 465 ASP A 431 REMARK 465 ILE A 432 REMARK 465 LEU A 433 REMARK 465 GLY B 229 REMARK 465 PRO B 230 REMARK 465 HIS B 231 REMARK 465 MET B 232 REMARK 465 GLU B 233 REMARK 465 ASN B 234 REMARK 465 LEU B 235 REMARK 465 TYR B 236 REMARK 465 PHE B 237 REMARK 465 GLN B 238 REMARK 465 GLY B 239 REMARK 465 GLY B 240 REMARK 465 ARG B 241 REMARK 465 GLY B 242 REMARK 465 VAL B 243 REMARK 465 GLN B 244 REMARK 465 ARG B 245 REMARK 465 LYS B 246 REMARK 465 LYS B 312 REMARK 465 GLY B 313 REMARK 465 TYR B 314 REMARK 465 GLY B 315 REMARK 465 ALA B 316 REMARK 465 THR B 317 REMARK 465 TYR B 318 REMARK 465 ASN B 319 REMARK 465 GLU B 320 REMARK 465 ASN B 321 REMARK 465 ARG B 322 REMARK 465 LYS B 323 REMARK 465 GLU B 324 REMARK 465 ALA B 325 REMARK 465 GLN B 429 REMARK 465 GLU B 430 REMARK 465 ASP B 431 REMARK 465 ILE B 432 REMARK 465 LEU B 433 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 247 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 ARG A 283 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 ILE A 302 CG1 CG2 CD1 REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 309 CG ND1 CD2 CE1 NE2 REMARK 470 TRP A 310 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 310 CZ3 CH2 REMARK 470 ILE A 311 CG1 CG2 CD1 REMARK 470 GLU A 324 CG CD OE1 OE2 REMARK 470 PHE A 326 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 ARG A 358 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 372 CG1 CG2 CD1 REMARK 470 ARG A 426 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 430 CG CD OE1 OE2 REMARK 470 TYR B 247 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 261 CG CD CE NZ REMARK 470 GLU B 262 CG CD OE1 OE2 REMARK 470 LYS B 264 CG CD CE NZ REMARK 470 HIS B 276 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 288 CG CD CE NZ REMARK 470 GLU B 301 CG CD OE1 OE2 REMARK 470 ARG B 305 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 308 CG CD NE CZ NH1 NH2 REMARK 470 TRP B 310 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 310 CZ3 CH2 REMARK 470 ILE B 311 CG1 CG2 CD1 REMARK 470 PHE B 326 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 327 CG CD OE1 OE2 REMARK 470 LYS B 340 CG CD CE NZ REMARK 470 GLU B 344 CG CD OE1 OE2 REMARK 470 GLU B 367 CG CD OE1 OE2 REMARK 470 LYS B 368 CG CD CE NZ REMARK 470 ILE B 372 CG1 CG2 CD1 REMARK 470 PHE B 394 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 428 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 325 31.44 -92.04 REMARK 500 ASN A 409 22.91 -153.62 REMARK 500 ASN B 409 31.10 -146.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 648 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 649 DISTANCE = 6.10 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8B1N RELATED DB: PDB REMARK 900 RELATED ID: 8BYH RELATED DB: PDB DBREF 8RI0 A 241 433 UNP E4THH1 E4THH1_CALNY 241 433 DBREF 8RI0 B 241 433 UNP E4THH1 E4THH1_CALNY 241 433 SEQADV 8RI0 GLY A 229 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 PRO A 230 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 HIS A 231 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 MET A 232 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 GLU A 233 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 ASN A 234 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 LEU A 235 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 TYR A 236 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 PHE A 237 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 GLN A 238 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 GLY A 239 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 GLY A 240 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 GLY B 229 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 PRO B 230 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 HIS B 231 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 MET B 232 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 GLU B 233 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 ASN B 234 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 LEU B 235 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 TYR B 236 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 PHE B 237 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 GLN B 238 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 GLY B 239 UNP E4THH1 EXPRESSION TAG SEQADV 8RI0 GLY B 240 UNP E4THH1 EXPRESSION TAG SEQRES 1 A 205 GLY PRO HIS MET GLU ASN LEU TYR PHE GLN GLY GLY ARG SEQRES 2 A 205 GLY VAL GLN ARG LYS TYR ASN ILE TYR VAL ALA LEU MET SEQRES 3 A 205 HIS TYR PRO MET ARG ASP LYS GLU GLY LYS VAL VAL THR SEQRES 4 A 205 THR SER ILE THR ASN MET ASP LEU HIS ASP ILE SER ARG SEQRES 5 A 205 SER CYS ARG THR PHE GLY VAL LYS ASN TYR PHE VAL VAL SEQRES 6 A 205 ASN PRO MET PRO ALA GLN ARG GLU ILE ALA SER ARG VAL SEQRES 7 A 205 VAL ARG HIS TRP ILE LYS GLY TYR GLY ALA THR TYR ASN SEQRES 8 A 205 GLU ASN ARG LYS GLU ALA PHE GLU TYR THR ILE ILE THR SEQRES 9 A 205 ASP SER LEU ALA SER VAL ILE LYS SER ILE GLU GLU LYS SEQRES 10 A 205 GLU SER GLY SER PRO ILE ILE ILE ALA THR THR ALA ARG SEQRES 11 A 205 TYR GLN GLN LYS ALA ILE SER ILE GLU LYS LEU LYS GLU SEQRES 12 A 205 ILE ALA ASP ARG PRO ILE LEU LEU LEU PHE GLY THR GLY SEQRES 13 A 205 TRP GLY PHE VAL ASP ASP ILE LEU GLU PHE ALA ASP TYR SEQRES 14 A 205 VAL LEU LYS PRO ILE HIS GLY VAL GLY ASP PHE ASN HIS SEQRES 15 A 205 LEU SER VAL ARG SER ALA VAL ALA ILE TYR LEU ASP ARG SEQRES 16 A 205 ILE ASN ARG SER PHE GLN GLU ASP ILE LEU SEQRES 1 B 205 GLY PRO HIS MET GLU ASN LEU TYR PHE GLN GLY GLY ARG SEQRES 2 B 205 GLY VAL GLN ARG LYS TYR ASN ILE TYR VAL ALA LEU MET SEQRES 3 B 205 HIS TYR PRO MET ARG ASP LYS GLU GLY LYS VAL VAL THR SEQRES 4 B 205 THR SER ILE THR ASN MET ASP LEU HIS ASP ILE SER ARG SEQRES 5 B 205 SER CYS ARG THR PHE GLY VAL LYS ASN TYR PHE VAL VAL SEQRES 6 B 205 ASN PRO MET PRO ALA GLN ARG GLU ILE ALA SER ARG VAL SEQRES 7 B 205 VAL ARG HIS TRP ILE LYS GLY TYR GLY ALA THR TYR ASN SEQRES 8 B 205 GLU ASN ARG LYS GLU ALA PHE GLU TYR THR ILE ILE THR SEQRES 9 B 205 ASP SER LEU ALA SER VAL ILE LYS SER ILE GLU GLU LYS SEQRES 10 B 205 GLU SER GLY SER PRO ILE ILE ILE ALA THR THR ALA ARG SEQRES 11 B 205 TYR GLN GLN LYS ALA ILE SER ILE GLU LYS LEU LYS GLU SEQRES 12 B 205 ILE ALA ASP ARG PRO ILE LEU LEU LEU PHE GLY THR GLY SEQRES 13 B 205 TRP GLY PHE VAL ASP ASP ILE LEU GLU PHE ALA ASP TYR SEQRES 14 B 205 VAL LEU LYS PRO ILE HIS GLY VAL GLY ASP PHE ASN HIS SEQRES 15 B 205 LEU SER VAL ARG SER ALA VAL ALA ILE TYR LEU ASP ARG SEQRES 16 B 205 ILE ASN ARG SER PHE GLN GLU ASP ILE LEU HET SAM A 501 27 HET SAM B 501 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 5 HOH *103(H2 O) HELIX 1 AA1 THR A 271 PHE A 285 1 15 HELIX 2 AA2 MET A 296 ILE A 311 1 16 HELIX 3 AA3 GLU A 324 GLU A 327 5 4 HELIX 4 AA4 SER A 334 SER A 347 1 14 HELIX 5 AA5 SER A 365 ALA A 373 1 9 HELIX 6 AA6 VAL A 388 ALA A 395 1 8 HELIX 7 AA7 SER A 412 PHE A 428 1 17 HELIX 8 AA8 THR B 271 PHE B 285 1 15 HELIX 9 AA9 MET B 296 ILE B 311 1 16 HELIX 10 AB1 SER B 334 SER B 347 1 14 HELIX 11 AB2 SER B 365 ALA B 373 1 9 HELIX 12 AB3 VAL B 388 ALA B 395 1 8 HELIX 13 AB4 SER B 412 PHE B 428 1 17 SHEET 1 AA1 6 THR A 329 THR A 332 0 SHEET 2 AA1 6 ASN A 289 VAL A 293 1 N TYR A 290 O ILE A 330 SHEET 3 AA1 6 ILE A 249 MET A 254 1 N LEU A 253 O PHE A 291 SHEET 4 AA1 6 ILE A 377 PHE A 381 1 O LEU A 379 N TYR A 250 SHEET 5 AA1 6 ILE A 351 ALA A 354 1 N ILE A 353 O LEU A 380 SHEET 6 AA1 6 TYR A 397 VAL A 398 1 O TYR A 397 N ALA A 354 SHEET 1 AA2 2 MET A 258 ARG A 259 0 SHEET 2 AA2 2 VAL A 265 VAL A 266 -1 O VAL A 266 N MET A 258 SHEET 1 AA3 6 THR B 329 THR B 332 0 SHEET 2 AA3 6 TYR B 290 VAL B 293 1 N TYR B 290 O ILE B 330 SHEET 3 AA3 6 ILE B 249 MET B 254 1 N LEU B 253 O VAL B 293 SHEET 4 AA3 6 ILE B 377 PHE B 381 1 O ILE B 377 N TYR B 250 SHEET 5 AA3 6 ILE B 351 ALA B 354 1 N ILE B 353 O LEU B 380 SHEET 6 AA3 6 TYR B 397 VAL B 398 1 O TYR B 397 N ALA B 354 SHEET 1 AA4 2 MET B 258 ARG B 259 0 SHEET 2 AA4 2 VAL B 265 VAL B 266 -1 O VAL B 266 N MET B 258 CISPEP 1 TYR A 256 PRO A 257 0 -1.59 CISPEP 2 TYR B 256 PRO B 257 0 -3.95 CRYST1 105.850 48.090 79.810 90.00 116.22 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009447 0.000000 0.004653 0.00000 SCALE2 0.000000 0.020794 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013967 0.00000