HEADER ANTIVIRAL PROTEIN 20-DEC-23 8RJ7 TITLE THE CRYSTAL STRUCTURE OF THE SARS-COV-2 RECEPTOR BINDING DOMAIN IN TITLE 2 COMPLEX WITH THE NEUTRALIZING NANOBODY 1.29 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: A, C, E, G, I; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CAMEL-DERIVED NANOBODY 1.29; COMPND 7 CHAIN: B, D, F, H, J; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: S, 2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-1573; SOURCE 10 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 11 EXPRESSION_SYSTEM_TISSUE: EMBRYO; SOURCE 12 EXPRESSION_SYSTEM_CELL: EPITHELIAL; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: FLAG-MCS-PCDNA3.1; SOURCE 15 MOL_ID: 2; SOURCE 16 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 17 ORGANISM_TAXID: 9838; SOURCE 18 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 21 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-1573; SOURCE 22 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 23 EXPRESSION_SYSTEM_TISSUE: EMBRYO; SOURCE 24 EXPRESSION_SYSTEM_CELL: EPITHELIAL; SOURCE 25 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 26 EXPRESSION_SYSTEM_PLASMID: FLAG-MCS-PCDNA3.1 KEYWDS CORONAVIRUS, COVID-19, RBD, SARS-COV-2, SPIKE, NANOBODIES, KEYWDS 2 NEUTRALIZATION, VIRAL PROTEIN, ANTIVIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.M.CASASNOVAS,L.A.FERNANDEZ,K.SILVA REVDAT 1 27-NOV-24 8RJ7 0 JRNL AUTH J.M.CASASNOVAS,L.A.FERNANDEZ,K.SILVA JRNL TITL THE CRYSTAL STRUCTURE OF THE SARS-COV-2 RECEPTOR BINDING JRNL TITL 2 DOMAIN IN COMPLEX WITH THE NEUTRALIZING NANOBODY 1.29 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.M.CASASNOVAS,Y.MARGOLLES,M.A.NORIEGA,M.GUZMAN,R.ARRANZ, REMARK 1 AUTH 2 R.MELERO,M.CASANOVA,J.A.CORBERA,N.JIMENEZ-DE-OYA, REMARK 1 AUTH 3 P.GASTAMINZA,U.GARAIGORTA,J.C.SAIZ,M.A.MARTIN-ACEBES, REMARK 1 AUTH 4 L.A.FERNANDEZ REMARK 1 TITL NANOBODIES PROTECTING FROM LETHAL SARS-COV-2 INFECTION REMARK 1 TITL 2 TARGET RECEPTOR BINDING EPITOPES PRESERVED IN VIRUS VARIANTS REMARK 1 TITL 3 OTHER THAN OMICRON. REMARK 1 REF FRONT IMMUNOL V. 13 63831 2022 REMARK 1 REFN ESSN 1664-3224 REMARK 1 PMID 35547740 REMARK 1 DOI 10.1038/S41586-021-04017-W REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 103304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 5183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5200 - 6.5200 0.98 3224 183 0.1646 0.2010 REMARK 3 2 6.5200 - 5.1800 0.98 3147 230 0.1682 0.1865 REMARK 3 3 5.1800 - 4.5200 0.98 3309 115 0.1397 0.1259 REMARK 3 4 4.5200 - 4.1100 0.99 3243 169 0.1367 0.1762 REMARK 3 5 4.1100 - 3.8200 0.98 3254 160 0.1431 0.1916 REMARK 3 6 3.8200 - 3.5900 0.98 3206 158 0.1653 0.1668 REMARK 3 7 3.5900 - 3.4100 0.99 3285 147 0.1698 0.2297 REMARK 3 8 3.4100 - 3.2600 0.99 3327 133 0.1897 0.2303 REMARK 3 9 3.2600 - 3.1400 0.99 3303 168 0.1930 0.2554 REMARK 3 10 3.1400 - 3.0300 1.00 3265 160 0.2047 0.2567 REMARK 3 11 3.0300 - 2.9300 0.99 3294 169 0.1977 0.2292 REMARK 3 12 2.9300 - 2.8500 0.99 3246 138 0.1943 0.2722 REMARK 3 13 2.8500 - 2.7800 1.00 3231 195 0.2076 0.2540 REMARK 3 14 2.7700 - 2.7100 1.00 3290 168 0.1974 0.2653 REMARK 3 15 2.7100 - 2.6500 1.00 3328 170 0.1951 0.2337 REMARK 3 16 2.6500 - 2.5900 1.00 3347 142 0.2135 0.2683 REMARK 3 17 2.5900 - 2.5400 1.00 3232 184 0.2194 0.2572 REMARK 3 18 2.5400 - 2.4900 1.00 3289 180 0.2219 0.2624 REMARK 3 19 2.4900 - 2.4500 1.00 3315 162 0.2195 0.2744 REMARK 3 20 2.4500 - 2.4000 0.99 3258 161 0.2124 0.3088 REMARK 3 21 2.4000 - 2.3700 0.99 3269 196 0.2128 0.2473 REMARK 3 22 2.3700 - 2.3300 0.99 3273 158 0.2149 0.2560 REMARK 3 23 2.3300 - 2.2900 1.00 3179 240 0.2094 0.2681 REMARK 3 24 2.2900 - 2.2600 1.00 3362 159 0.2186 0.2726 REMARK 3 25 2.2600 - 2.2300 1.00 3157 230 0.2261 0.2657 REMARK 3 26 2.2300 - 2.2000 1.00 3313 202 0.2271 0.2776 REMARK 3 27 2.2000 - 2.1800 1.00 3190 174 0.2399 0.3140 REMARK 3 28 2.1800 - 2.1500 1.00 3381 155 0.2413 0.2625 REMARK 3 29 2.1500 - 2.1200 1.00 3215 195 0.2610 0.3182 REMARK 3 30 2.1200 - 2.1000 1.00 3389 182 0.2604 0.2973 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.274 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.089 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 12545 REMARK 3 ANGLE : 0.852 17059 REMARK 3 CHIRALITY : 0.054 1815 REMARK 3 PLANARITY : 0.007 2233 REMARK 3 DIHEDRAL : 6.294 1779 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RJ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1292133644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103348 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 44.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.74900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: TRIANGULAR PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG-3350, 100MM BICINE PH 9, 20 MM REMARK 280 (NH4)2SO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 133.49800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.74900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 330 REMARK 465 SER A 331 REMARK 465 LYS A 528 REMARK 465 LEU A 529 REMARK 465 VAL A 530 REMARK 465 PRO A 531 REMARK 465 ARG A 532 REMARK 465 GLY C 330 REMARK 465 SER C 331 REMARK 465 LEU C 529 REMARK 465 VAL C 530 REMARK 465 PRO C 531 REMARK 465 ARG C 532 REMARK 465 GLY E 330 REMARK 465 SER E 331 REMARK 465 ILE E 332 REMARK 465 THR E 333 REMARK 465 LEU E 529 REMARK 465 VAL E 530 REMARK 465 PRO E 531 REMARK 465 ARG E 532 REMARK 465 GLY G 330 REMARK 465 SER G 331 REMARK 465 ILE G 332 REMARK 465 THR G 333 REMARK 465 VAL G 524 REMARK 465 CYS G 525 REMARK 465 GLY G 526 REMARK 465 PRO G 527 REMARK 465 LYS G 528 REMARK 465 LEU G 529 REMARK 465 VAL G 530 REMARK 465 PRO G 531 REMARK 465 ARG G 532 REMARK 465 GLN B 1 REMARK 465 LEU B 123 REMARK 465 VAL B 124 REMARK 465 PRO B 125 REMARK 465 ARG B 126 REMARK 465 LEU D 123 REMARK 465 VAL D 124 REMARK 465 PRO D 125 REMARK 465 ARG D 126 REMARK 465 SER F 121 REMARK 465 ALA F 122 REMARK 465 LEU F 123 REMARK 465 VAL F 124 REMARK 465 PRO F 125 REMARK 465 ARG F 126 REMARK 465 GLN H 1 REMARK 465 ALA H 122 REMARK 465 LEU H 123 REMARK 465 VAL H 124 REMARK 465 PRO H 125 REMARK 465 ARG H 126 REMARK 465 GLY I 330 REMARK 465 SER I 331 REMARK 465 ILE I 332 REMARK 465 THR I 333 REMARK 465 ASN I 334 REMARK 465 PRO I 527 REMARK 465 LYS I 528 REMARK 465 LEU I 529 REMARK 465 VAL I 530 REMARK 465 PRO I 531 REMARK 465 ARG I 532 REMARK 465 GLN J 1 REMARK 465 LEU J 123 REMARK 465 VAL J 124 REMARK 465 PRO J 125 REMARK 465 ARG J 126 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 367 CG1 CG2 REMARK 470 ASN A 481 CG OD1 ND2 REMARK 470 LEU C 518 CG CD1 CD2 REMARK 470 ASN E 394 CG OD1 ND2 REMARK 470 CYS G 391 SG REMARK 470 TYR D 27 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR F 31 OG1 CG2 REMARK 470 ASN I 360 CG OD1 ND2 REMARK 470 ASN I 481 CG OD1 ND2 REMARK 470 SER J 11 OG REMARK 470 GLU J 89 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 781 O HOH B 363 1.81 REMARK 500 O HOH G 819 O HOH G 822 1.85 REMARK 500 O HOH E 774 O HOH E 786 1.92 REMARK 500 O HOH A 827 O HOH A 841 1.92 REMARK 500 OE1 GLU I 484 O HOH I 701 1.92 REMARK 500 O HOH A 750 O HOH A 835 1.93 REMARK 500 OD1 ASP C 364 O HOH C 701 1.95 REMARK 500 O HOH A 803 O HOH A 827 1.96 REMARK 500 O GLY G 496 O HOH G 701 1.96 REMARK 500 O GLY C 496 O HOH C 702 1.96 REMARK 500 OE2 GLU D 46 O HOH D 301 2.00 REMARK 500 O HOH F 231 O HOH F 235 2.01 REMARK 500 O HOH A 819 O HOH A 821 2.01 REMARK 500 NH1 ARG C 408 O HOH C 703 2.02 REMARK 500 O HOH A 759 O HOH A 807 2.03 REMARK 500 O HOH A 824 O HOH A 837 2.04 REMARK 500 O HOH G 860 O HOH H 313 2.04 REMARK 500 NH2 ARG G 466 O HOH G 702 2.04 REMARK 500 O HOH G 849 O HOH G 850 2.05 REMARK 500 O HOH B 380 O HOH B 381 2.05 REMARK 500 O THR G 523 O HOH G 703 2.06 REMARK 500 O HOH A 800 O HOH A 820 2.06 REMARK 500 OH TYR J 80 O HOH J 201 2.07 REMARK 500 N VAL C 367 O HOH C 701 2.07 REMARK 500 O HOH I 766 O HOH I 767 2.08 REMARK 500 O GLY A 446 O HOH A 701 2.09 REMARK 500 O HOH G 702 O HOH G 837 2.09 REMARK 500 OG1 THR H 118 O HOH H 301 2.09 REMARK 500 O GLY I 496 O HOH I 702 2.10 REMARK 500 OH TYR G 473 O HOH G 704 2.12 REMARK 500 O HOH J 225 O HOH J 237 2.12 REMARK 500 OD1 ASN H 77 O HOH H 302 2.15 REMARK 500 N GLY I 446 O HOH I 703 2.15 REMARK 500 O HOH B 335 O HOH B 358 2.16 REMARK 500 OD1 ASP E 420 O HOH E 701 2.17 REMARK 500 O HOH B 335 O HOH B 373 2.17 REMARK 500 O HOH G 831 O HOH G 853 2.17 REMARK 500 OG SER I 366 O HOH I 704 2.18 REMARK 500 OG SER H 71 O HOH H 303 2.18 REMARK 500 O HOH G 832 O HOH G 860 2.18 REMARK 500 O HOH A 749 O HOH A 838 2.18 REMARK 500 O HOH E 787 O HOH E 788 2.19 REMARK 500 O HOH F 214 O HOH F 243 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH G 852 O HOH B 365 3455 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 464 15.51 56.74 REMARK 500 ASN C 334 159.03 75.54 REMARK 500 ALA C 352 46.24 -102.29 REMARK 500 PHE C 377 83.36 -153.15 REMARK 500 ASN C 422 -50.33 -125.13 REMARK 500 ASN C 487 17.85 59.02 REMARK 500 HIS C 519 95.35 -67.97 REMARK 500 ALA E 352 46.82 -103.20 REMARK 500 ASN E 422 -53.65 -135.36 REMARK 500 ASP E 428 30.21 -88.67 REMARK 500 ASN E 487 18.05 55.36 REMARK 500 ALA G 352 42.26 -106.57 REMARK 500 PHE G 377 85.20 -151.26 REMARK 500 ASN G 422 -51.00 -126.52 REMARK 500 ASP B 107 85.12 -153.17 REMARK 500 ASP D 107 86.84 -151.60 REMARK 500 ASN F 30 42.56 -93.86 REMARK 500 ASN F 109 11.14 -140.26 REMARK 500 ASP H 107 88.95 -154.04 REMARK 500 PRO I 337 43.32 -80.68 REMARK 500 ALA I 352 58.06 -105.92 REMARK 500 PHE I 377 81.98 -154.72 REMARK 500 ASP I 428 36.44 -92.21 REMARK 500 ASP J 107 86.49 -153.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH I 767 DISTANCE = 6.03 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LYS C 601 REMARK 610 NAG C 602 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NAG I 601 DBREF 8RJ7 A 332 528 UNP P0DTC2 SPIKE_SARS2 332 528 DBREF 8RJ7 C 332 528 UNP P0DTC2 SPIKE_SARS2 332 528 DBREF 8RJ7 E 332 528 UNP P0DTC2 SPIKE_SARS2 332 528 DBREF 8RJ7 G 332 528 UNP P0DTC2 SPIKE_SARS2 332 528 DBREF 8RJ7 B 1 126 PDB 8RJ7 8RJ7 1 126 DBREF 8RJ7 D 1 126 PDB 8RJ7 8RJ7 1 126 DBREF 8RJ7 F 1 126 PDB 8RJ7 8RJ7 1 126 DBREF 8RJ7 H 1 126 PDB 8RJ7 8RJ7 1 126 DBREF 8RJ7 I 332 528 UNP P0DTC2 SPIKE_SARS2 332 528 DBREF 8RJ7 J 1 126 PDB 8RJ7 8RJ7 1 126 SEQADV 8RJ7 GLY A 330 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 SER A 331 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 LEU A 529 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 VAL A 530 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 PRO A 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 ARG A 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 GLY C 330 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 SER C 331 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 LEU C 529 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 VAL C 530 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 PRO C 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 ARG C 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 GLY E 330 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 SER E 331 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 LEU E 529 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 VAL E 530 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 PRO E 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 ARG E 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 GLY G 330 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 SER G 331 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 LEU G 529 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 VAL G 530 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 PRO G 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 ARG G 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 GLY I 330 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 SER I 331 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 LEU I 529 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 VAL I 530 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 PRO I 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8RJ7 ARG I 532 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 203 GLY SER ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE SEQRES 2 A 203 ASN ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG SEQRES 3 A 203 LYS ARG ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU SEQRES 4 A 203 TYR ASN SER ALA SER PHE SER THR PHE LYS CYS TYR GLY SEQRES 5 A 203 VAL SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN SEQRES 6 A 203 VAL TYR ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL SEQRES 7 A 203 ARG GLN ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP SEQRES 8 A 203 TYR ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL SEQRES 9 A 203 ILE ALA TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY SEQRES 10 A 203 GLY ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER SEQRES 11 A 203 ASN LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE SEQRES 12 A 203 TYR GLN ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY SEQRES 13 A 203 PHE ASN CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN SEQRES 14 A 203 PRO THR ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL SEQRES 15 A 203 VAL LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL SEQRES 16 A 203 CYS GLY PRO LYS LEU VAL PRO ARG SEQRES 1 C 203 GLY SER ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE SEQRES 2 C 203 ASN ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG SEQRES 3 C 203 LYS ARG ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU SEQRES 4 C 203 TYR ASN SER ALA SER PHE SER THR PHE LYS CYS TYR GLY SEQRES 5 C 203 VAL SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN SEQRES 6 C 203 VAL TYR ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL SEQRES 7 C 203 ARG GLN ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP SEQRES 8 C 203 TYR ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL SEQRES 9 C 203 ILE ALA TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY SEQRES 10 C 203 GLY ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER SEQRES 11 C 203 ASN LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE SEQRES 12 C 203 TYR GLN ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY SEQRES 13 C 203 PHE ASN CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN SEQRES 14 C 203 PRO THR ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL SEQRES 15 C 203 VAL LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL SEQRES 16 C 203 CYS GLY PRO LYS LEU VAL PRO ARG SEQRES 1 E 203 GLY SER ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE SEQRES 2 E 203 ASN ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG SEQRES 3 E 203 LYS ARG ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU SEQRES 4 E 203 TYR ASN SER ALA SER PHE SER THR PHE LYS CYS TYR GLY SEQRES 5 E 203 VAL SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN SEQRES 6 E 203 VAL TYR ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL SEQRES 7 E 203 ARG GLN ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP SEQRES 8 E 203 TYR ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL SEQRES 9 E 203 ILE ALA TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY SEQRES 10 E 203 GLY ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER SEQRES 11 E 203 ASN LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE SEQRES 12 E 203 TYR GLN ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY SEQRES 13 E 203 PHE ASN CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN SEQRES 14 E 203 PRO THR ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL SEQRES 15 E 203 VAL LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL SEQRES 16 E 203 CYS GLY PRO LYS LEU VAL PRO ARG SEQRES 1 G 203 GLY SER ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE SEQRES 2 G 203 ASN ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG SEQRES 3 G 203 LYS ARG ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU SEQRES 4 G 203 TYR ASN SER ALA SER PHE SER THR PHE LYS CYS TYR GLY SEQRES 5 G 203 VAL SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN SEQRES 6 G 203 VAL TYR ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL SEQRES 7 G 203 ARG GLN ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP SEQRES 8 G 203 TYR ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL SEQRES 9 G 203 ILE ALA TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY SEQRES 10 G 203 GLY ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER SEQRES 11 G 203 ASN LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE SEQRES 12 G 203 TYR GLN ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY SEQRES 13 G 203 PHE ASN CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN SEQRES 14 G 203 PRO THR ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL SEQRES 15 G 203 VAL LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL SEQRES 16 G 203 CYS GLY PRO LYS LEU VAL PRO ARG SEQRES 1 B 126 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY SER VAL GLN SEQRES 2 B 126 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 126 TYR THR ILE ASN THR ASP ALA VAL ALA TRP PHE ARG GLN SEQRES 4 B 126 ALA PRO GLY LYS GLY ASP GLU ARG VAL ALA VAL ILE TYR SEQRES 5 B 126 THR GLY SER GLY ASN THR ASN TYR ALA ASP SER VAL LYS SEQRES 6 B 126 GLY ARG PHE THR ILE SER GLN ASP ASN ALA LYS ASN THR SEQRES 7 B 126 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 B 126 ALA LEU TYR TYR CYS ALA SER GLY TYR TYR GLY ALA SER SEQRES 9 B 126 GLY TYR ASP PHE ASN ASN TRP GLY GLN GLY THR GLN VAL SEQRES 10 B 126 THR VAL SER SER ALA LEU VAL PRO ARG SEQRES 1 D 126 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY SER VAL GLN SEQRES 2 D 126 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 D 126 TYR THR ILE ASN THR ASP ALA VAL ALA TRP PHE ARG GLN SEQRES 4 D 126 ALA PRO GLY LYS GLY ASP GLU ARG VAL ALA VAL ILE TYR SEQRES 5 D 126 THR GLY SER GLY ASN THR ASN TYR ALA ASP SER VAL LYS SEQRES 6 D 126 GLY ARG PHE THR ILE SER GLN ASP ASN ALA LYS ASN THR SEQRES 7 D 126 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 D 126 ALA LEU TYR TYR CYS ALA SER GLY TYR TYR GLY ALA SER SEQRES 9 D 126 GLY TYR ASP PHE ASN ASN TRP GLY GLN GLY THR GLN VAL SEQRES 10 D 126 THR VAL SER SER ALA LEU VAL PRO ARG SEQRES 1 F 126 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY SER VAL GLN SEQRES 2 F 126 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 F 126 TYR THR ILE ASN THR ASP ALA VAL ALA TRP PHE ARG GLN SEQRES 4 F 126 ALA PRO GLY LYS GLY ASP GLU ARG VAL ALA VAL ILE TYR SEQRES 5 F 126 THR GLY SER GLY ASN THR ASN TYR ALA ASP SER VAL LYS SEQRES 6 F 126 GLY ARG PHE THR ILE SER GLN ASP ASN ALA LYS ASN THR SEQRES 7 F 126 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 F 126 ALA LEU TYR TYR CYS ALA SER GLY TYR TYR GLY ALA SER SEQRES 9 F 126 GLY TYR ASP PHE ASN ASN TRP GLY GLN GLY THR GLN VAL SEQRES 10 F 126 THR VAL SER SER ALA LEU VAL PRO ARG SEQRES 1 H 126 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY SER VAL GLN SEQRES 2 H 126 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 126 TYR THR ILE ASN THR ASP ALA VAL ALA TRP PHE ARG GLN SEQRES 4 H 126 ALA PRO GLY LYS GLY ASP GLU ARG VAL ALA VAL ILE TYR SEQRES 5 H 126 THR GLY SER GLY ASN THR ASN TYR ALA ASP SER VAL LYS SEQRES 6 H 126 GLY ARG PHE THR ILE SER GLN ASP ASN ALA LYS ASN THR SEQRES 7 H 126 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 H 126 ALA LEU TYR TYR CYS ALA SER GLY TYR TYR GLY ALA SER SEQRES 9 H 126 GLY TYR ASP PHE ASN ASN TRP GLY GLN GLY THR GLN VAL SEQRES 10 H 126 THR VAL SER SER ALA LEU VAL PRO ARG SEQRES 1 I 203 GLY SER ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE SEQRES 2 I 203 ASN ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG SEQRES 3 I 203 LYS ARG ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU SEQRES 4 I 203 TYR ASN SER ALA SER PHE SER THR PHE LYS CYS TYR GLY SEQRES 5 I 203 VAL SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN SEQRES 6 I 203 VAL TYR ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL SEQRES 7 I 203 ARG GLN ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP SEQRES 8 I 203 TYR ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL SEQRES 9 I 203 ILE ALA TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY SEQRES 10 I 203 GLY ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER SEQRES 11 I 203 ASN LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE SEQRES 12 I 203 TYR GLN ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY SEQRES 13 I 203 PHE ASN CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN SEQRES 14 I 203 PRO THR ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL SEQRES 15 I 203 VAL LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL SEQRES 16 I 203 CYS GLY PRO LYS LEU VAL PRO ARG SEQRES 1 J 126 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY SER VAL GLN SEQRES 2 J 126 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 J 126 TYR THR ILE ASN THR ASP ALA VAL ALA TRP PHE ARG GLN SEQRES 4 J 126 ALA PRO GLY LYS GLY ASP GLU ARG VAL ALA VAL ILE TYR SEQRES 5 J 126 THR GLY SER GLY ASN THR ASN TYR ALA ASP SER VAL LYS SEQRES 6 J 126 GLY ARG PHE THR ILE SER GLN ASP ASN ALA LYS ASN THR SEQRES 7 J 126 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 J 126 ALA LEU TYR TYR CYS ALA SER GLY TYR TYR GLY ALA SER SEQRES 9 J 126 GLY TYR ASP PHE ASN ASN TRP GLY GLN GLY THR GLN VAL SEQRES 10 J 126 THR VAL SER SER ALA LEU VAL PRO ARG HET NAG A 601 14 HET SO4 A 602 5 HET LYS C 601 9 HET NAG C 602 14 HET NAG E 601 14 HET SO4 E 602 5 HET NAG G 601 14 HET SO4 B 201 5 HET SO4 D 201 5 HET SO4 H 201 5 HET NAG I 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM LYS LYSINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 11 NAG 5(C8 H15 N O6) FORMUL 12 SO4 5(O4 S 2-) FORMUL 13 LYS C6 H15 N2 O2 1+ FORMUL 22 HOH *887(H2 O) HELIX 1 AA1 PHE A 338 ASN A 343 1 6 HELIX 2 AA2 SER A 349 TRP A 353 5 5 HELIX 3 AA3 ASP A 364 ASN A 370 1 7 HELIX 4 AA4 SER A 383 ASP A 389 5 7 HELIX 5 AA5 ASP A 405 ILE A 410 5 6 HELIX 6 AA6 GLY A 416 ASN A 422 1 7 HELIX 7 AA7 SER A 438 SER A 443 1 6 HELIX 8 AA8 GLY A 502 TYR A 505 5 4 HELIX 9 AA9 PRO C 337 ASN C 343 1 7 HELIX 10 AB1 TYR C 365 SER C 371 1 7 HELIX 11 AB2 SER C 383 ASP C 389 5 7 HELIX 12 AB3 ASP C 405 ILE C 410 5 6 HELIX 13 AB4 GLY C 416 ASN C 422 1 7 HELIX 14 AB5 SER C 438 SER C 443 1 6 HELIX 15 AB6 GLY C 502 TYR C 505 5 4 HELIX 16 AB7 PRO E 337 ASN E 343 1 7 HELIX 17 AB8 ASP E 364 SER E 371 1 8 HELIX 18 AB9 SER E 383 ASP E 389 5 7 HELIX 19 AC1 ASP E 405 ILE E 410 5 6 HELIX 20 AC2 GLY E 416 ASN E 422 1 7 HELIX 21 AC3 SER E 438 SER E 443 1 6 HELIX 22 AC4 GLY E 502 TYR E 505 5 4 HELIX 23 AC5 PRO G 337 ASN G 343 1 7 HELIX 24 AC6 SER G 349 TRP G 353 5 5 HELIX 25 AC7 TYR G 365 ASN G 370 1 6 HELIX 26 AC8 SER G 383 LEU G 390 5 8 HELIX 27 AC9 ASP G 405 ILE G 410 5 6 HELIX 28 AD1 GLY G 416 ASN G 422 1 7 HELIX 29 AD2 SER G 438 SER G 443 1 6 HELIX 30 AD3 GLY G 502 TYR G 505 5 4 HELIX 31 AD4 ASN B 74 LYS B 76 5 3 HELIX 32 AD5 LYS B 87 THR B 91 5 5 HELIX 33 AD6 ASN D 74 LYS D 76 5 3 HELIX 34 AD7 LYS D 87 THR D 91 5 5 HELIX 35 AD8 THR F 28 THR F 31 5 4 HELIX 36 AD9 ASP F 62 LYS F 65 5 4 HELIX 37 AE1 LYS F 87 THR F 91 5 5 HELIX 38 AE2 TYR H 27 THR H 31 5 5 HELIX 39 AE3 ASN H 74 LYS H 76 5 3 HELIX 40 AE4 LYS H 87 THR H 91 5 5 HELIX 41 AE5 PRO I 337 ASN I 343 1 7 HELIX 42 AE6 ASP I 364 ASN I 370 1 7 HELIX 43 AE7 SER I 383 LEU I 387 5 5 HELIX 44 AE8 ASP I 405 ILE I 410 5 6 HELIX 45 AE9 GLY I 416 ASN I 422 1 7 HELIX 46 AF1 SER I 438 SER I 443 1 6 HELIX 47 AF2 GLY I 502 TYR I 505 5 4 HELIX 48 AF3 ASN J 74 LYS J 76 5 3 HELIX 49 AF4 LYS J 87 THR J 91 5 5 SHEET 1 AA1 9 ASN A 354 ILE A 358 0 SHEET 2 AA1 9 ASN A 394 ARG A 403 -1 O VAL A 395 N ILE A 358 SHEET 3 AA1 9 PRO A 507 GLU A 516 -1 O VAL A 512 N ASP A 398 SHEET 4 AA1 9 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AA1 9 THR A 376 TYR A 380 -1 N TYR A 380 O GLY A 431 SHEET 6 AA1 9 GLY B 105 TRP B 111 -1 O TYR B 106 N PHE A 377 SHEET 7 AA1 9 ALA B 92 GLY B 102 -1 N TYR B 100 O ASP B 107 SHEET 8 AA1 9 THR B 115 SER B 120 -1 O THR B 115 N TYR B 94 SHEET 9 AA1 9 GLY B 10 GLN B 13 1 N VAL B 12 O THR B 118 SHEET 1 AA210 ASN A 354 ILE A 358 0 SHEET 2 AA210 ASN A 394 ARG A 403 -1 O VAL A 395 N ILE A 358 SHEET 3 AA210 PRO A 507 GLU A 516 -1 O VAL A 512 N ASP A 398 SHEET 4 AA210 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AA210 THR A 376 TYR A 380 -1 N TYR A 380 O GLY A 431 SHEET 6 AA210 GLY B 105 TRP B 111 -1 O TYR B 106 N PHE A 377 SHEET 7 AA210 ALA B 92 GLY B 102 -1 N TYR B 100 O ASP B 107 SHEET 8 AA210 ALA B 33 GLN B 39 -1 N PHE B 37 O TYR B 95 SHEET 9 AA210 GLU B 46 TYR B 52 -1 O ALA B 49 N TRP B 36 SHEET 10 AA210 THR B 58 TYR B 60 -1 O ASN B 59 N VAL B 50 SHEET 1 AA3 3 CYS A 361 VAL A 362 0 SHEET 2 AA3 3 VAL A 524 CYS A 525 1 O CYS A 525 N CYS A 361 SHEET 3 AA3 3 CYS A 391 PHE A 392 -1 N PHE A 392 O VAL A 524 SHEET 1 AA4 2 LEU A 452 ARG A 454 0 SHEET 2 AA4 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AA5 2 TYR A 473 GLN A 474 0 SHEET 2 AA5 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SHEET 1 AA6 9 ASN C 354 ILE C 358 0 SHEET 2 AA6 9 ASN C 394 ARG C 403 -1 O VAL C 395 N ILE C 358 SHEET 3 AA6 9 PRO C 507 GLU C 516 -1 O TYR C 508 N ILE C 402 SHEET 4 AA6 9 GLY C 431 ASN C 437 -1 N ILE C 434 O VAL C 511 SHEET 5 AA6 9 THR C 376 TYR C 380 -1 N TYR C 380 O GLY C 431 SHEET 6 AA6 9 GLY D 105 TRP D 111 -1 O TYR D 106 N PHE C 377 SHEET 7 AA6 9 ALA D 92 GLY D 102 -1 N GLY D 102 O GLY D 105 SHEET 8 AA6 9 THR D 115 SER D 120 -1 O THR D 115 N TYR D 94 SHEET 9 AA6 9 GLY D 10 GLN D 13 1 N GLY D 10 O THR D 118 SHEET 1 AA710 ASN C 354 ILE C 358 0 SHEET 2 AA710 ASN C 394 ARG C 403 -1 O VAL C 395 N ILE C 358 SHEET 3 AA710 PRO C 507 GLU C 516 -1 O TYR C 508 N ILE C 402 SHEET 4 AA710 GLY C 431 ASN C 437 -1 N ILE C 434 O VAL C 511 SHEET 5 AA710 THR C 376 TYR C 380 -1 N TYR C 380 O GLY C 431 SHEET 6 AA710 GLY D 105 TRP D 111 -1 O TYR D 106 N PHE C 377 SHEET 7 AA710 ALA D 92 GLY D 102 -1 N GLY D 102 O GLY D 105 SHEET 8 AA710 ALA D 33 GLN D 39 -1 N PHE D 37 O TYR D 95 SHEET 9 AA710 GLU D 46 TYR D 52 -1 O ALA D 49 N TRP D 36 SHEET 10 AA710 THR D 58 TYR D 60 -1 O ASN D 59 N VAL D 50 SHEET 1 AA8 3 CYS C 361 VAL C 362 0 SHEET 2 AA8 3 VAL C 524 CYS C 525 1 O CYS C 525 N CYS C 361 SHEET 3 AA8 3 CYS C 391 PHE C 392 -1 N PHE C 392 O VAL C 524 SHEET 1 AA9 2 LEU C 452 ARG C 454 0 SHEET 2 AA9 2 LEU C 492 SER C 494 -1 O GLN C 493 N TYR C 453 SHEET 1 AB1 2 TYR C 473 GLN C 474 0 SHEET 2 AB1 2 CYS C 488 TYR C 489 -1 O TYR C 489 N TYR C 473 SHEET 1 AB2 9 ASN E 354 ILE E 358 0 SHEET 2 AB2 9 ASN E 394 ARG E 403 -1 O VAL E 395 N ILE E 358 SHEET 3 AB2 9 PRO E 507 GLU E 516 -1 O TYR E 508 N ILE E 402 SHEET 4 AB2 9 GLY E 431 ASN E 437 -1 N ILE E 434 O VAL E 511 SHEET 5 AB2 9 THR E 376 TYR E 380 -1 N TYR E 380 O GLY E 431 SHEET 6 AB2 9 GLY F 105 TRP F 111 -1 O TYR F 106 N PHE E 377 SHEET 7 AB2 9 ALA F 92 GLY F 102 -1 N TYR F 100 O ASP F 107 SHEET 8 AB2 9 THR F 115 SER F 120 -1 O THR F 115 N TYR F 94 SHEET 9 AB2 9 GLY F 10 GLN F 13 1 N VAL F 12 O THR F 118 SHEET 1 AB310 ASN E 354 ILE E 358 0 SHEET 2 AB310 ASN E 394 ARG E 403 -1 O VAL E 395 N ILE E 358 SHEET 3 AB310 PRO E 507 GLU E 516 -1 O TYR E 508 N ILE E 402 SHEET 4 AB310 GLY E 431 ASN E 437 -1 N ILE E 434 O VAL E 511 SHEET 5 AB310 THR E 376 TYR E 380 -1 N TYR E 380 O GLY E 431 SHEET 6 AB310 GLY F 105 TRP F 111 -1 O TYR F 106 N PHE E 377 SHEET 7 AB310 ALA F 92 GLY F 102 -1 N TYR F 100 O ASP F 107 SHEET 8 AB310 ALA F 33 GLN F 39 -1 N PHE F 37 O TYR F 95 SHEET 9 AB310 GLU F 46 TYR F 52 -1 O ALA F 49 N TRP F 36 SHEET 10 AB310 THR F 58 TYR F 60 -1 O ASN F 59 N VAL F 50 SHEET 1 AB4 3 CYS E 361 VAL E 362 0 SHEET 2 AB4 3 VAL E 524 CYS E 525 1 O CYS E 525 N CYS E 361 SHEET 3 AB4 3 CYS E 391 PHE E 392 -1 N PHE E 392 O VAL E 524 SHEET 1 AB5 2 LEU E 452 ARG E 454 0 SHEET 2 AB5 2 LEU E 492 SER E 494 -1 O GLN E 493 N TYR E 453 SHEET 1 AB6 2 TYR E 473 GLN E 474 0 SHEET 2 AB6 2 CYS E 488 TYR E 489 -1 O TYR E 489 N TYR E 473 SHEET 1 AB7 9 ASN G 354 ILE G 358 0 SHEET 2 AB7 9 PHE G 392 ARG G 403 -1 O VAL G 395 N ILE G 358 SHEET 3 AB7 9 PRO G 507 LEU G 517 -1 O TYR G 508 N ILE G 402 SHEET 4 AB7 9 GLY G 431 ASN G 437 -1 N ILE G 434 O VAL G 511 SHEET 5 AB7 9 THR G 376 TYR G 380 -1 N LYS G 378 O VAL G 433 SHEET 6 AB7 9 GLY H 105 TRP H 111 -1 O TYR H 106 N PHE G 377 SHEET 7 AB7 9 ALA H 92 GLY H 102 -1 N GLY H 102 O GLY H 105 SHEET 8 AB7 9 THR H 115 SER H 120 -1 O THR H 115 N TYR H 94 SHEET 9 AB7 9 GLY H 10 GLN H 13 1 N GLY H 10 O THR H 118 SHEET 1 AB810 ASN G 354 ILE G 358 0 SHEET 2 AB810 PHE G 392 ARG G 403 -1 O VAL G 395 N ILE G 358 SHEET 3 AB810 PRO G 507 LEU G 517 -1 O TYR G 508 N ILE G 402 SHEET 4 AB810 GLY G 431 ASN G 437 -1 N ILE G 434 O VAL G 511 SHEET 5 AB810 THR G 376 TYR G 380 -1 N LYS G 378 O VAL G 433 SHEET 6 AB810 GLY H 105 TRP H 111 -1 O TYR H 106 N PHE G 377 SHEET 7 AB810 ALA H 92 GLY H 102 -1 N GLY H 102 O GLY H 105 SHEET 8 AB810 ALA H 33 GLN H 39 -1 N PHE H 37 O TYR H 95 SHEET 9 AB810 GLU H 46 TYR H 52 -1 O ALA H 49 N TRP H 36 SHEET 10 AB810 THR H 58 TYR H 60 -1 O ASN H 59 N VAL H 50 SHEET 1 AB9 2 LEU G 452 ARG G 454 0 SHEET 2 AB9 2 LEU G 492 SER G 494 -1 O GLN G 493 N TYR G 453 SHEET 1 AC1 2 TYR G 473 GLN G 474 0 SHEET 2 AC1 2 CYS G 488 TYR G 489 -1 O TYR G 489 N TYR G 473 SHEET 1 AC2 4 LEU B 4 SER B 7 0 SHEET 2 AC2 4 LEU B 18 ALA B 24 -1 O ALA B 23 N VAL B 5 SHEET 3 AC2 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AC2 4 PHE B 68 ASP B 73 -1 N THR B 69 O GLN B 82 SHEET 1 AC3 4 LEU D 4 SER D 7 0 SHEET 2 AC3 4 LEU D 18 ALA D 24 -1 O SER D 21 N SER D 7 SHEET 3 AC3 4 THR D 78 MET D 83 -1 O MET D 83 N LEU D 18 SHEET 4 AC3 4 PHE D 68 ASP D 73 -1 N ASP D 73 O THR D 78 SHEET 1 AC4 4 VAL F 2 SER F 7 0 SHEET 2 AC4 4 LEU F 18 GLY F 26 -1 O ALA F 23 N VAL F 5 SHEET 3 AC4 4 THR F 78 MET F 83 -1 O MET F 83 N LEU F 18 SHEET 4 AC4 4 PHE F 68 ASP F 73 -1 N ASP F 73 O THR F 78 SHEET 1 AC5 4 GLN H 3 SER H 7 0 SHEET 2 AC5 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AC5 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AC5 4 PHE H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AC6 9 ASN I 354 ILE I 358 0 SHEET 2 AC6 9 ASN I 394 ARG I 403 -1 O VAL I 395 N ILE I 358 SHEET 3 AC6 9 PRO I 507 GLU I 516 -1 O TYR I 508 N ILE I 402 SHEET 4 AC6 9 GLY I 431 ASN I 437 -1 N CYS I 432 O LEU I 513 SHEET 5 AC6 9 THR I 376 CYS I 379 -1 N LYS I 378 O VAL I 433 SHEET 6 AC6 9 GLY J 105 TRP J 111 -1 O TYR J 106 N PHE I 377 SHEET 7 AC6 9 ALA J 92 GLY J 102 -1 N GLY J 102 O GLY J 105 SHEET 8 AC6 9 THR J 115 SER J 120 -1 O THR J 115 N TYR J 94 SHEET 9 AC6 9 GLY J 10 GLN J 13 1 N VAL J 12 O THR J 118 SHEET 1 AC710 ASN I 354 ILE I 358 0 SHEET 2 AC710 ASN I 394 ARG I 403 -1 O VAL I 395 N ILE I 358 SHEET 3 AC710 PRO I 507 GLU I 516 -1 O TYR I 508 N ILE I 402 SHEET 4 AC710 GLY I 431 ASN I 437 -1 N CYS I 432 O LEU I 513 SHEET 5 AC710 THR I 376 CYS I 379 -1 N LYS I 378 O VAL I 433 SHEET 6 AC710 GLY J 105 TRP J 111 -1 O TYR J 106 N PHE I 377 SHEET 7 AC710 ALA J 92 GLY J 102 -1 N GLY J 102 O GLY J 105 SHEET 8 AC710 ALA J 33 GLN J 39 -1 N PHE J 37 O TYR J 95 SHEET 9 AC710 GLU J 46 TYR J 52 -1 O ALA J 49 N TRP J 36 SHEET 10 AC710 THR J 58 TYR J 60 -1 O ASN J 59 N VAL J 50 SHEET 1 AC8 2 CYS I 361 VAL I 362 0 SHEET 2 AC8 2 VAL I 524 CYS I 525 1 O CYS I 525 N CYS I 361 SHEET 1 AC9 2 LEU I 452 ARG I 454 0 SHEET 2 AC9 2 LEU I 492 SER I 494 -1 O GLN I 493 N TYR I 453 SHEET 1 AD1 2 TYR I 473 GLN I 474 0 SHEET 2 AD1 2 CYS I 488 TYR I 489 -1 O TYR I 489 N TYR I 473 SHEET 1 AD2 4 GLN J 3 SER J 7 0 SHEET 2 AD2 4 LEU J 18 SER J 25 -1 O ALA J 23 N VAL J 5 SHEET 3 AD2 4 THR J 78 MET J 83 -1 O MET J 83 N LEU J 18 SHEET 4 AD2 4 PHE J 68 ASP J 73 -1 N THR J 69 O GLN J 82 SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.04 SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.05 SSBOND 3 CYS A 391 CYS A 525 1555 1555 2.03 SSBOND 4 CYS A 480 CYS A 488 1555 1555 2.06 SSBOND 5 CYS C 336 CYS C 361 1555 1555 2.04 SSBOND 6 CYS C 379 CYS C 432 1555 1555 2.06 SSBOND 7 CYS C 391 CYS C 525 1555 1555 2.06 SSBOND 8 CYS C 480 CYS C 488 1555 1555 2.05 SSBOND 9 CYS E 336 CYS E 361 1555 1555 2.02 SSBOND 10 CYS E 379 CYS E 432 1555 1555 2.03 SSBOND 11 CYS E 391 CYS E 525 1555 1555 2.04 SSBOND 12 CYS E 480 CYS E 488 1555 1555 2.04 SSBOND 13 CYS G 336 CYS G 361 1555 1555 2.04 SSBOND 14 CYS G 379 CYS G 432 1555 1555 2.05 SSBOND 15 CYS G 480 CYS G 488 1555 1555 2.05 SSBOND 16 CYS B 22 CYS B 96 1555 1555 2.07 SSBOND 17 CYS D 22 CYS D 96 1555 1555 2.07 SSBOND 18 CYS F 22 CYS F 96 1555 1555 2.06 SSBOND 19 CYS H 22 CYS H 96 1555 1555 2.06 SSBOND 20 CYS I 336 CYS I 361 1555 1555 2.05 SSBOND 21 CYS I 379 CYS I 432 1555 1555 2.04 SSBOND 22 CYS I 391 CYS I 525 1555 1555 2.03 SSBOND 23 CYS I 480 CYS I 488 1555 1555 2.04 SSBOND 24 CYS J 22 CYS J 96 1555 1555 2.07 LINK ND2 ASN A 343 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN E 343 C1 NAG E 601 1555 1555 1.44 LINK ND2 ASN G 343 C1 NAG G 601 1555 1555 1.43 LINK ND2 ASN I 343 C1 NAG I 601 1555 1555 1.44 CRYST1 89.164 89.164 200.247 90.00 90.00 120.00 P 32 15 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011215 0.006475 0.000000 0.00000 SCALE2 0.000000 0.012950 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004994 0.00000