HEADER MEMBRANE PROTEIN 02-JAN-24 8RL7 TITLE SPNS2 IN COMPLEX WITH HOMO DI-GLUEBODY GBD12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUEBODY GBD12; COMPND 3 CHAIN: B, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SPHINGOSINE-1-PHOSPHATE TRANSPORTER SPNS2; COMPND 7 CHAIN: A, C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_TAXID: 9844; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: SPNS2; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SPNS2, DI-GLUEBODY, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR G.YI,M.YE,D.MAMALIS,H.LI,D.B.SAUER,F.VON DELFT,B.G.DAVIS, AUTHOR 2 R.J.C.GILBERT REVDAT 1 15-JAN-25 8RL7 0 JRNL AUTH G.YI,D.MAMALIS,M.YE,L.CARRIQUE,M.FAIRHEAD,H.LI,K.DUERR, JRNL AUTH 2 P.ZHANG,D.B.SAUER,F.VON DELFT,B.G.DAVIS,R.J.C.GILBERT JRNL TITL DI-GLUEBODIES: RIGID MODULAR NANOBODY PROTEIN ASSEMBLIES JRNL TITL 2 ENABLING SIMULTANEOUS DETERMINATION OF HIGH-RESOLUTION JRNL TITL 3 CRYO-EM STRUCTURES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CRYOSPARC, UCSF REMARK 3 CHIMERAX, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, PHENIX, COOT REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 8QV6 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 148.800 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.760 REMARK 3 NUMBER OF PARTICLES : 440552 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8RL7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1292135650. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SPNS2 IN COMPLEX WITH HOMO DI REMARK 245 -GLUEBODY GBD12; DI-GLUEBODY REMARK 245 GBD12; SPHINGOSINE-1-PHOSPHATE REMARK 245 TRANSPORTER SPNS2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 9.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : SPNS2 AND GBD12 WERE SEPARATELY REMARK 245 EXPRESSED IN HEK293 CELLS AND E.COLI. TWO COPIES OF GBD12 WERE REMARK 245 ASSEMBLED VIA A DISULFIDE TO FORM A HOMODIMER.; GLUEBODY GBD12; REMARK 245 SPHINGOSINE-1-PHOSPHATE TRANSPORTER SPNS2 REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 12013 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 0 REMARK 465 SER D 0 REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 CYS A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 CYS A 6 REMARK 465 ALA A 7 REMARK 465 SER A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 15 REMARK 465 GLU A 16 REMARK 465 GLU A 17 REMARK 465 GLU A 18 REMARK 465 ALA A 19 REMARK 465 ASP A 20 REMARK 465 ALA A 21 REMARK 465 GLU A 22 REMARK 465 ARG A 23 REMARK 465 ARG A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 ARG A 27 REMARK 465 ARG A 28 REMARK 465 GLY A 29 REMARK 465 ALA A 30 REMARK 465 GLN A 31 REMARK 465 ARG A 32 REMARK 465 GLY A 33 REMARK 465 ALA A 34 REMARK 465 GLY A 35 REMARK 465 GLY A 36 REMARK 465 SER A 37 REMARK 465 GLY A 38 REMARK 465 CYS A 39 REMARK 465 CYS A 40 REMARK 465 GLY A 41 REMARK 465 ALA A 42 REMARK 465 ARG A 43 REMARK 465 GLY A 44 REMARK 465 ALA A 45 REMARK 465 GLY A 46 REMARK 465 GLY A 47 REMARK 465 ALA A 48 REMARK 465 GLY A 49 REMARK 465 VAL A 50 REMARK 465 SER A 51 REMARK 465 ALA A 52 REMARK 465 ALA A 53 REMARK 465 GLY A 54 REMARK 465 ASP A 55 REMARK 465 GLU A 56 REMARK 465 VAL A 57 REMARK 465 GLN A 58 REMARK 465 THR A 59 REMARK 465 LEU A 60 REMARK 465 SER A 61 REMARK 465 GLY A 62 REMARK 465 SER A 63 REMARK 465 VAL A 64 REMARK 465 ARG A 65 REMARK 465 ARG A 66 REMARK 465 ALA A 67 REMARK 465 PRO A 68 REMARK 465 THR A 69 REMARK 465 GLY A 70 REMARK 465 PRO A 71 REMARK 465 PRO A 72 REMARK 465 GLY A 73 REMARK 465 THR A 74 REMARK 465 PRO A 75 REMARK 465 GLY A 76 REMARK 465 THR A 77 REMARK 465 PRO A 78 REMARK 465 GLY A 79 REMARK 465 CYS A 80 REMARK 465 ALA A 81 REMARK 465 ALA A 82 REMARK 465 THR A 83 REMARK 465 ALA A 84 REMARK 465 LYS A 85 REMARK 465 GLY A 86 REMARK 465 PRO A 87 REMARK 465 GLY A 88 REMARK 465 ALA A 89 REMARK 465 GLN A 90 REMARK 465 GLN A 91 REMARK 465 PRO A 92 REMARK 465 LYS A 93 REMARK 465 PRO A 94 REMARK 465 ALA A 95 REMARK 465 SER A 96 REMARK 465 LEU A 97 REMARK 465 GLY A 98 REMARK 465 ARG A 99 REMARK 465 GLY A 287 REMARK 465 HIS A 288 REMARK 465 ALA A 289 REMARK 465 ASP A 290 REMARK 465 GLN A 291 REMARK 465 LEU A 292 REMARK 465 GLY A 293 REMARK 465 ASP A 294 REMARK 465 GLN A 295 REMARK 465 LEU A 296 REMARK 465 THR A 352 REMARK 465 CYS A 353 REMARK 465 ASN A 354 REMARK 465 SER A 355 REMARK 465 PRO A 356 REMARK 465 PRO A 357 REMARK 465 CYS A 358 REMARK 465 LEU A 540 REMARK 465 ALA A 541 REMARK 465 MET A 542 REMARK 465 PRO A 543 REMARK 465 PRO A 544 REMARK 465 ALA A 545 REMARK 465 SER A 546 REMARK 465 VAL A 547 REMARK 465 LYS A 548 REMARK 465 VAL A 549 REMARK 465 ALA A 550 REMARK 465 GLU A 551 REMARK 465 ASN A 552 REMARK 465 LEU A 553 REMARK 465 TYR A 554 REMARK 465 PHE A 555 REMARK 465 GLN A 556 REMARK 465 MET C 1 REMARK 465 MET C 2 REMARK 465 CYS C 3 REMARK 465 LEU C 4 REMARK 465 GLU C 5 REMARK 465 CYS C 6 REMARK 465 ALA C 7 REMARK 465 SER C 8 REMARK 465 ALA C 9 REMARK 465 ALA C 10 REMARK 465 ALA C 11 REMARK 465 GLY C 12 REMARK 465 GLY C 13 REMARK 465 ALA C 14 REMARK 465 GLU C 15 REMARK 465 GLU C 16 REMARK 465 GLU C 17 REMARK 465 GLU C 18 REMARK 465 ALA C 19 REMARK 465 ASP C 20 REMARK 465 ALA C 21 REMARK 465 GLU C 22 REMARK 465 ARG C 23 REMARK 465 ARG C 24 REMARK 465 ARG C 25 REMARK 465 ARG C 26 REMARK 465 ARG C 27 REMARK 465 ARG C 28 REMARK 465 GLY C 29 REMARK 465 ALA C 30 REMARK 465 GLN C 31 REMARK 465 ARG C 32 REMARK 465 GLY C 33 REMARK 465 ALA C 34 REMARK 465 GLY C 35 REMARK 465 GLY C 36 REMARK 465 SER C 37 REMARK 465 GLY C 38 REMARK 465 CYS C 39 REMARK 465 CYS C 40 REMARK 465 GLY C 41 REMARK 465 ALA C 42 REMARK 465 ARG C 43 REMARK 465 GLY C 44 REMARK 465 ALA C 45 REMARK 465 GLY C 46 REMARK 465 GLY C 47 REMARK 465 ALA C 48 REMARK 465 GLY C 49 REMARK 465 VAL C 50 REMARK 465 SER C 51 REMARK 465 ALA C 52 REMARK 465 ALA C 53 REMARK 465 GLY C 54 REMARK 465 ASP C 55 REMARK 465 GLU C 56 REMARK 465 VAL C 57 REMARK 465 GLN C 58 REMARK 465 THR C 59 REMARK 465 LEU C 60 REMARK 465 SER C 61 REMARK 465 GLY C 62 REMARK 465 SER C 63 REMARK 465 VAL C 64 REMARK 465 ARG C 65 REMARK 465 ARG C 66 REMARK 465 ALA C 67 REMARK 465 PRO C 68 REMARK 465 THR C 69 REMARK 465 GLY C 70 REMARK 465 PRO C 71 REMARK 465 PRO C 72 REMARK 465 GLY C 73 REMARK 465 THR C 74 REMARK 465 PRO C 75 REMARK 465 GLY C 76 REMARK 465 THR C 77 REMARK 465 PRO C 78 REMARK 465 GLY C 79 REMARK 465 CYS C 80 REMARK 465 ALA C 81 REMARK 465 ALA C 82 REMARK 465 THR C 83 REMARK 465 ALA C 84 REMARK 465 LYS C 85 REMARK 465 GLY C 86 REMARK 465 PRO C 87 REMARK 465 GLY C 88 REMARK 465 ALA C 89 REMARK 465 GLN C 90 REMARK 465 GLN C 91 REMARK 465 PRO C 92 REMARK 465 LYS C 93 REMARK 465 PRO C 94 REMARK 465 ALA C 95 REMARK 465 SER C 96 REMARK 465 LEU C 97 REMARK 465 GLY C 98 REMARK 465 ARG C 99 REMARK 465 GLY C 287 REMARK 465 HIS C 288 REMARK 465 ALA C 289 REMARK 465 ASP C 290 REMARK 465 GLN C 291 REMARK 465 LEU C 292 REMARK 465 GLY C 293 REMARK 465 ASP C 294 REMARK 465 GLN C 295 REMARK 465 LEU C 296 REMARK 465 THR C 352 REMARK 465 CYS C 353 REMARK 465 ASN C 354 REMARK 465 SER C 355 REMARK 465 PRO C 356 REMARK 465 PRO C 357 REMARK 465 CYS C 358 REMARK 465 LEU C 540 REMARK 465 ALA C 541 REMARK 465 MET C 542 REMARK 465 PRO C 543 REMARK 465 PRO C 544 REMARK 465 ALA C 545 REMARK 465 SER C 546 REMARK 465 VAL C 547 REMARK 465 LYS C 548 REMARK 465 VAL C 549 REMARK 465 ALA C 550 REMARK 465 GLU C 551 REMARK 465 ASN C 552 REMARK 465 LEU C 553 REMARK 465 TYR C 554 REMARK 465 PHE C 555 REMARK 465 GLN C 556 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 ASP B 62 CG OD1 OD2 REMARK 470 MET B 83 CG SD CE REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 LYS D 43 CG CD CE NZ REMARK 470 GLU D 44 CG CD OE1 OE2 REMARK 470 GLU D 46 CG CD OE1 OE2 REMARK 470 ASP D 62 CG OD1 OD2 REMARK 470 MET D 83 CG SD CE REMARK 470 LYS D 87 CG CD CE NZ REMARK 470 GLU D 89 CG CD OE1 OE2 REMARK 470 LYS D 120 CG CD CE NZ REMARK 470 ARG A 101 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 LYS A 168 CG CD CE NZ REMARK 470 CYS A 173 SG REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 229 CG CD1 CD2 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 MET A 271 CG SD CE REMARK 470 LEU A 276 CG CD1 CD2 REMARK 470 LEU A 278 CG CD1 CD2 REMARK 470 THR A 284 OG1 CG2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 ARG A 299 CG CD NE CZ NH1 NH2 REMARK 470 THR A 300 OG1 CG2 REMARK 470 MET A 306 CG SD CE REMARK 470 GLN A 344 CG CD OE1 NE2 REMARK 470 LYS A 348 CG CD CE NZ REMARK 470 GLU A 351 CG CD OE1 OE2 REMARK 470 LEU A 376 CG CD1 CD2 REMARK 470 LYS A 491 CG CD CE NZ REMARK 470 ARG C 101 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 136 CG CD CE NZ REMARK 470 LYS C 168 CG CD CE NZ REMARK 470 CYS C 173 SG REMARK 470 ARG C 227 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 229 CG CD1 CD2 REMARK 470 LYS C 253 CG CD CE NZ REMARK 470 MET C 271 CG SD CE REMARK 470 LEU C 276 CG CD1 CD2 REMARK 470 LEU C 278 CG CD1 CD2 REMARK 470 THR C 284 OG1 CG2 REMARK 470 LYS C 285 CG CD CE NZ REMARK 470 ARG C 286 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 297 CG CD CE NZ REMARK 470 ARG C 299 CG CD NE CZ NH1 NH2 REMARK 470 THR C 300 OG1 CG2 REMARK 470 MET C 306 CG SD CE REMARK 470 GLN C 344 CG CD OE1 NE2 REMARK 470 LYS C 348 CG CD CE NZ REMARK 470 GLU C 351 CG CD OE1 OE2 REMARK 470 LEU C 376 CG CD1 CD2 REMARK 470 LYS C 491 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 109 57.29 -94.84 REMARK 500 ARG D 109 56.55 -94.94 REMARK 500 THR D 112 29.63 45.78 REMARK 500 THR A 223 55.16 -143.96 REMARK 500 LYS C 224 -159.92 -153.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LMT A 601 REMARK 610 LMT C 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-19333 RELATED DB: EMDB REMARK 900 SPNS2 IN COMPLEX WITH DI-GLUEBODY GBD12 DBREF 8RL7 B 0 127 PDB 8RL7 8RL7 0 127 DBREF 8RL7 D 0 127 PDB 8RL7 8RL7 0 127 DBREF 8RL7 A 1 549 UNP Q8IVW8 SPNS2_HUMAN 1 549 DBREF 8RL7 C 1 549 UNP Q8IVW8 SPNS2_HUMAN 1 549 SEQADV 8RL7 ALA A 550 UNP Q8IVW8 EXPRESSION TAG SEQADV 8RL7 GLU A 551 UNP Q8IVW8 EXPRESSION TAG SEQADV 8RL7 ASN A 552 UNP Q8IVW8 EXPRESSION TAG SEQADV 8RL7 LEU A 553 UNP Q8IVW8 EXPRESSION TAG SEQADV 8RL7 TYR A 554 UNP Q8IVW8 EXPRESSION TAG SEQADV 8RL7 PHE A 555 UNP Q8IVW8 EXPRESSION TAG SEQADV 8RL7 GLN A 556 UNP Q8IVW8 EXPRESSION TAG SEQADV 8RL7 ALA C 550 UNP Q8IVW8 EXPRESSION TAG SEQADV 8RL7 GLU C 551 UNP Q8IVW8 EXPRESSION TAG SEQADV 8RL7 ASN C 552 UNP Q8IVW8 EXPRESSION TAG SEQADV 8RL7 LEU C 553 UNP Q8IVW8 EXPRESSION TAG SEQADV 8RL7 TYR C 554 UNP Q8IVW8 EXPRESSION TAG SEQADV 8RL7 PHE C 555 UNP Q8IVW8 EXPRESSION TAG SEQADV 8RL7 GLN C 556 UNP Q8IVW8 EXPRESSION TAG SEQRES 1 B 128 SER GLN VAL GLN LEU VAL GLU ASN GLY GLY GLY CYS VAL SEQRES 2 B 128 LYS ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 3 B 128 GLY ARG LEU LEU SER TRP TYR ASP MET ALA TRP PHE ARG SEQRES 4 B 128 GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA VAL SEQRES 5 B 128 THR SER THR GLY ALA GLY THR HIS TYR VAL ASP SER VAL SEQRES 6 B 128 LYS GLY ARG PHE THR ILE SER ARG VAL ASN ALA GLU ASN SEQRES 7 B 128 THR MET TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP SEQRES 8 B 128 THR ALA VAL TYR TYR CYS ALA ALA ALA ASN THR ARG LEU SEQRES 9 B 128 THR ALA LEU SER LEU ARG THR THR THR GLY SER TRP ALA SEQRES 10 B 128 TYR TRP GLY LYS GLY THR GLN VAL MET VAL SER SEQRES 1 D 128 SER GLN VAL GLN LEU VAL GLU ASN GLY GLY GLY CYS VAL SEQRES 2 D 128 LYS ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 3 D 128 GLY ARG LEU LEU SER TRP TYR ASP MET ALA TRP PHE ARG SEQRES 4 D 128 GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA VAL SEQRES 5 D 128 THR SER THR GLY ALA GLY THR HIS TYR VAL ASP SER VAL SEQRES 6 D 128 LYS GLY ARG PHE THR ILE SER ARG VAL ASN ALA GLU ASN SEQRES 7 D 128 THR MET TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP SEQRES 8 D 128 THR ALA VAL TYR TYR CYS ALA ALA ALA ASN THR ARG LEU SEQRES 9 D 128 THR ALA LEU SER LEU ARG THR THR THR GLY SER TRP ALA SEQRES 10 D 128 TYR TRP GLY LYS GLY THR GLN VAL MET VAL SER SEQRES 1 A 556 MET MET CYS LEU GLU CYS ALA SER ALA ALA ALA GLY GLY SEQRES 2 A 556 ALA GLU GLU GLU GLU ALA ASP ALA GLU ARG ARG ARG ARG SEQRES 3 A 556 ARG ARG GLY ALA GLN ARG GLY ALA GLY GLY SER GLY CYS SEQRES 4 A 556 CYS GLY ALA ARG GLY ALA GLY GLY ALA GLY VAL SER ALA SEQRES 5 A 556 ALA GLY ASP GLU VAL GLN THR LEU SER GLY SER VAL ARG SEQRES 6 A 556 ARG ALA PRO THR GLY PRO PRO GLY THR PRO GLY THR PRO SEQRES 7 A 556 GLY CYS ALA ALA THR ALA LYS GLY PRO GLY ALA GLN GLN SEQRES 8 A 556 PRO LYS PRO ALA SER LEU GLY ARG GLY ARG GLY ALA ALA SEQRES 9 A 556 ALA ALA ILE LEU SER LEU GLY ASN VAL LEU ASN TYR LEU SEQRES 10 A 556 ASP ARG TYR THR VAL ALA GLY VAL LEU LEU ASP ILE GLN SEQRES 11 A 556 GLN HIS PHE GLY VAL LYS ASP ARG GLY ALA GLY LEU LEU SEQRES 12 A 556 GLN SER VAL PHE ILE CYS SER PHE MET VAL ALA ALA PRO SEQRES 13 A 556 ILE PHE GLY TYR LEU GLY ASP ARG PHE ASN ARG LYS VAL SEQRES 14 A 556 ILE LEU SER CYS GLY ILE PHE PHE TRP SER ALA VAL THR SEQRES 15 A 556 PHE SER SER SER PHE ILE PRO GLN GLN TYR PHE TRP LEU SEQRES 16 A 556 LEU VAL LEU SER ARG GLY LEU VAL GLY ILE GLY GLU ALA SEQRES 17 A 556 SER TYR SER THR ILE ALA PRO THR ILE ILE GLY ASP LEU SEQRES 18 A 556 PHE THR LYS ASN THR ARG THR LEU MET LEU SER VAL PHE SEQRES 19 A 556 TYR PHE ALA ILE PRO LEU GLY SER GLY LEU GLY TYR ILE SEQRES 20 A 556 THR GLY SER SER VAL LYS GLN ALA ALA GLY ASP TRP HIS SEQRES 21 A 556 TRP ALA LEU ARG VAL SER PRO VAL LEU GLY MET ILE THR SEQRES 22 A 556 GLY THR LEU ILE LEU ILE LEU VAL PRO ALA THR LYS ARG SEQRES 23 A 556 GLY HIS ALA ASP GLN LEU GLY ASP GLN LEU LYS ALA ARG SEQRES 24 A 556 THR SER TRP LEU ARG ASP MET LYS ALA LEU ILE ARG ASN SEQRES 25 A 556 ARG SER TYR VAL PHE SER SER LEU ALA THR SER ALA VAL SEQRES 26 A 556 SER PHE ALA THR GLY ALA LEU GLY MET TRP ILE PRO LEU SEQRES 27 A 556 TYR LEU HIS ARG ALA GLN VAL VAL GLN LYS THR ALA GLU SEQRES 28 A 556 THR CYS ASN SER PRO PRO CYS GLY ALA LYS ASP SER LEU SEQRES 29 A 556 ILE PHE GLY ALA ILE THR CYS PHE THR GLY PHE LEU GLY SEQRES 30 A 556 VAL VAL THR GLY ALA GLY ALA THR ARG TRP CYS ARG LEU SEQRES 31 A 556 LYS THR GLN ARG ALA ASP PRO LEU VAL CYS ALA VAL GLY SEQRES 32 A 556 MET LEU GLY SER ALA ILE PHE ILE CYS LEU ILE PHE VAL SEQRES 33 A 556 ALA ALA LYS SER SER ILE VAL GLY ALA TYR ILE CYS ILE SEQRES 34 A 556 PHE VAL GLY GLU THR LEU LEU PHE SER ASN TRP ALA ILE SEQRES 35 A 556 THR ALA ASP ILE LEU MET TYR VAL VAL ILE PRO THR ARG SEQRES 36 A 556 ARG ALA THR ALA VAL ALA LEU GLN SER PHE THR SER HIS SEQRES 37 A 556 LEU LEU GLY ASP ALA GLY SER PRO TYR LEU ILE GLY PHE SEQRES 38 A 556 ILE SER ASP LEU ILE ARG GLN SER THR LYS ASP SER PRO SEQRES 39 A 556 LEU TRP GLU PHE LEU SER LEU GLY TYR ALA LEU MET LEU SEQRES 40 A 556 CYS PRO PHE VAL VAL VAL LEU GLY GLY MET PHE PHE LEU SEQRES 41 A 556 ALA THR ALA LEU PHE PHE VAL SER ASP ARG ALA ARG ALA SEQRES 42 A 556 GLU GLN GLN VAL ASN GLN LEU ALA MET PRO PRO ALA SER SEQRES 43 A 556 VAL LYS VAL ALA GLU ASN LEU TYR PHE GLN SEQRES 1 C 556 MET MET CYS LEU GLU CYS ALA SER ALA ALA ALA GLY GLY SEQRES 2 C 556 ALA GLU GLU GLU GLU ALA ASP ALA GLU ARG ARG ARG ARG SEQRES 3 C 556 ARG ARG GLY ALA GLN ARG GLY ALA GLY GLY SER GLY CYS SEQRES 4 C 556 CYS GLY ALA ARG GLY ALA GLY GLY ALA GLY VAL SER ALA SEQRES 5 C 556 ALA GLY ASP GLU VAL GLN THR LEU SER GLY SER VAL ARG SEQRES 6 C 556 ARG ALA PRO THR GLY PRO PRO GLY THR PRO GLY THR PRO SEQRES 7 C 556 GLY CYS ALA ALA THR ALA LYS GLY PRO GLY ALA GLN GLN SEQRES 8 C 556 PRO LYS PRO ALA SER LEU GLY ARG GLY ARG GLY ALA ALA SEQRES 9 C 556 ALA ALA ILE LEU SER LEU GLY ASN VAL LEU ASN TYR LEU SEQRES 10 C 556 ASP ARG TYR THR VAL ALA GLY VAL LEU LEU ASP ILE GLN SEQRES 11 C 556 GLN HIS PHE GLY VAL LYS ASP ARG GLY ALA GLY LEU LEU SEQRES 12 C 556 GLN SER VAL PHE ILE CYS SER PHE MET VAL ALA ALA PRO SEQRES 13 C 556 ILE PHE GLY TYR LEU GLY ASP ARG PHE ASN ARG LYS VAL SEQRES 14 C 556 ILE LEU SER CYS GLY ILE PHE PHE TRP SER ALA VAL THR SEQRES 15 C 556 PHE SER SER SER PHE ILE PRO GLN GLN TYR PHE TRP LEU SEQRES 16 C 556 LEU VAL LEU SER ARG GLY LEU VAL GLY ILE GLY GLU ALA SEQRES 17 C 556 SER TYR SER THR ILE ALA PRO THR ILE ILE GLY ASP LEU SEQRES 18 C 556 PHE THR LYS ASN THR ARG THR LEU MET LEU SER VAL PHE SEQRES 19 C 556 TYR PHE ALA ILE PRO LEU GLY SER GLY LEU GLY TYR ILE SEQRES 20 C 556 THR GLY SER SER VAL LYS GLN ALA ALA GLY ASP TRP HIS SEQRES 21 C 556 TRP ALA LEU ARG VAL SER PRO VAL LEU GLY MET ILE THR SEQRES 22 C 556 GLY THR LEU ILE LEU ILE LEU VAL PRO ALA THR LYS ARG SEQRES 23 C 556 GLY HIS ALA ASP GLN LEU GLY ASP GLN LEU LYS ALA ARG SEQRES 24 C 556 THR SER TRP LEU ARG ASP MET LYS ALA LEU ILE ARG ASN SEQRES 25 C 556 ARG SER TYR VAL PHE SER SER LEU ALA THR SER ALA VAL SEQRES 26 C 556 SER PHE ALA THR GLY ALA LEU GLY MET TRP ILE PRO LEU SEQRES 27 C 556 TYR LEU HIS ARG ALA GLN VAL VAL GLN LYS THR ALA GLU SEQRES 28 C 556 THR CYS ASN SER PRO PRO CYS GLY ALA LYS ASP SER LEU SEQRES 29 C 556 ILE PHE GLY ALA ILE THR CYS PHE THR GLY PHE LEU GLY SEQRES 30 C 556 VAL VAL THR GLY ALA GLY ALA THR ARG TRP CYS ARG LEU SEQRES 31 C 556 LYS THR GLN ARG ALA ASP PRO LEU VAL CYS ALA VAL GLY SEQRES 32 C 556 MET LEU GLY SER ALA ILE PHE ILE CYS LEU ILE PHE VAL SEQRES 33 C 556 ALA ALA LYS SER SER ILE VAL GLY ALA TYR ILE CYS ILE SEQRES 34 C 556 PHE VAL GLY GLU THR LEU LEU PHE SER ASN TRP ALA ILE SEQRES 35 C 556 THR ALA ASP ILE LEU MET TYR VAL VAL ILE PRO THR ARG SEQRES 36 C 556 ARG ALA THR ALA VAL ALA LEU GLN SER PHE THR SER HIS SEQRES 37 C 556 LEU LEU GLY ASP ALA GLY SER PRO TYR LEU ILE GLY PHE SEQRES 38 C 556 ILE SER ASP LEU ILE ARG GLN SER THR LYS ASP SER PRO SEQRES 39 C 556 LEU TRP GLU PHE LEU SER LEU GLY TYR ALA LEU MET LEU SEQRES 40 C 556 CYS PRO PHE VAL VAL VAL LEU GLY GLY MET PHE PHE LEU SEQRES 41 C 556 ALA THR ALA LEU PHE PHE VAL SER ASP ARG ALA ARG ALA SEQRES 42 C 556 GLU GLN GLN VAL ASN GLN LEU ALA MET PRO PRO ALA SER SEQRES 43 C 556 VAL LYS VAL ALA GLU ASN LEU TYR PHE GLN HET LMT A 601 58 HET LMT C 601 58 HETNAM LMT DODECYL-BETA-D-MALTOSIDE FORMUL 5 LMT 2(C24 H46 O11) HELIX 1 AA1 LEU B 28 SER B 30 5 3 HELIX 2 AA2 LYS B 87 THR B 91 5 5 HELIX 3 AA3 LEU D 28 SER D 30 5 3 HELIX 4 AA4 LYS D 87 THR D 91 5 5 HELIX 5 AA5 ARG A 101 VAL A 125 1 25 HELIX 6 AA6 VAL A 125 GLY A 134 1 10 HELIX 7 AA7 LYS A 136 PHE A 165 1 30 HELIX 8 AA8 ASN A 166 SER A 186 1 21 HELIX 9 AA9 PHE A 193 PHE A 222 1 30 HELIX 10 AB1 LYS A 224 GLY A 257 1 34 HELIX 11 AB2 TRP A 259 VAL A 281 1 23 HELIX 12 AB3 ALA A 298 ASN A 312 1 15 HELIX 13 AB4 ASN A 312 GLN A 347 1 36 HELIX 14 AB5 ALA A 360 LEU A 390 1 31 HELIX 15 AB6 LYS A 391 GLN A 393 5 3 HELIX 16 AB7 ARG A 394 SER A 421 1 28 HELIX 17 AB8 SER A 421 SER A 438 1 18 HELIX 18 AB9 ASN A 439 VAL A 451 1 13 HELIX 19 AC1 ARG A 455 GLY A 471 1 17 HELIX 20 AC2 GLY A 474 THR A 490 1 17 HELIX 21 AC3 SER A 493 GLN A 539 1 47 HELIX 22 AC4 ARG C 101 VAL C 125 1 25 HELIX 23 AC5 VAL C 125 GLY C 134 1 10 HELIX 24 AC6 LYS C 136 PHE C 165 1 30 HELIX 25 AC7 ASN C 166 SER C 186 1 21 HELIX 26 AC8 PHE C 193 PHE C 222 1 30 HELIX 27 AC9 LYS C 224 GLY C 257 1 34 HELIX 28 AD1 TRP C 259 VAL C 281 1 23 HELIX 29 AD2 ALA C 298 ASN C 312 1 15 HELIX 30 AD3 ASN C 312 GLN C 347 1 36 HELIX 31 AD4 ALA C 360 LEU C 390 1 31 HELIX 32 AD5 LYS C 391 GLN C 393 5 3 HELIX 33 AD6 ARG C 394 SER C 421 1 28 HELIX 34 AD7 SER C 421 SER C 438 1 18 HELIX 35 AD8 ASN C 439 VAL C 451 1 13 HELIX 36 AD9 ARG C 455 GLY C 471 1 17 HELIX 37 AE1 GLY C 474 THR C 490 1 17 HELIX 38 AE2 SER C 493 GLN C 539 1 47 SHEET 1 AA1 4 LEU B 4 ASN B 7 0 SHEET 2 AA1 4 LEU B 18 ALA B 24 -1 O ALA B 23 N VAL B 5 SHEET 3 AA1 4 THR B 78 MET B 83 -1 O MET B 79 N CYS B 22 SHEET 4 AA1 4 PHE B 68 VAL B 73 -1 N SER B 71 O TYR B 80 SHEET 1 AA2 6 CYS B 11 VAL B 12 0 SHEET 2 AA2 6 THR B 122 VAL B 126 1 O MET B 125 N VAL B 12 SHEET 3 AA2 6 ALA B 92 ASN B 100 -1 N TYR B 94 O THR B 122 SHEET 4 AA2 6 TYR B 32 GLN B 39 -1 N PHE B 37 O TYR B 95 SHEET 5 AA2 6 GLU B 46 VAL B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AA2 6 THR B 58 TYR B 60 -1 O HIS B 59 N ALA B 50 SHEET 1 AA3 4 CYS B 11 VAL B 12 0 SHEET 2 AA3 4 THR B 122 VAL B 126 1 O MET B 125 N VAL B 12 SHEET 3 AA3 4 ALA B 92 ASN B 100 -1 N TYR B 94 O THR B 122 SHEET 4 AA3 4 TYR B 117 TRP B 118 -1 O TYR B 117 N ALA B 98 SHEET 1 AA4 9 THR D 58 TYR D 60 0 SHEET 2 AA4 9 ARG D 45 VAL D 51 -1 N ALA D 50 O HIS D 59 SHEET 3 AA4 9 TYR D 32 GLN D 39 -1 N ARG D 38 O GLU D 46 SHEET 4 AA4 9 ALA D 92 ASN D 100 -1 O TYR D 95 N PHE D 37 SHEET 5 AA4 9 TYR D 117 LYS D 120 -1 O TYR D 117 N ALA D 98 SHEET 6 AA4 9 LEU D 4 ASN D 7 1 N GLU D 6 O LYS D 120 SHEET 7 AA4 9 LEU D 18 ALA D 24 -1 O ALA D 23 N VAL D 5 SHEET 8 AA4 9 THR D 78 MET D 83 -1 O LEU D 81 N LEU D 20 SHEET 9 AA4 9 PHE D 68 VAL D 73 -1 N SER D 71 O TYR D 80 SHEET 1 AA5 5 THR D 58 TYR D 60 0 SHEET 2 AA5 5 ARG D 45 VAL D 51 -1 N ALA D 50 O HIS D 59 SHEET 3 AA5 5 TYR D 32 GLN D 39 -1 N ARG D 38 O GLU D 46 SHEET 4 AA5 5 ALA D 92 ASN D 100 -1 O TYR D 95 N PHE D 37 SHEET 5 AA5 5 THR D 122 VAL D 124 -1 O VAL D 124 N ALA D 92 SSBOND 1 CYS B 11 CYS D 11 1555 1555 2.03 SSBOND 2 CYS B 22 CYS B 96 1555 1555 2.03 SSBOND 3 CYS D 22 CYS D 96 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000