HEADER IMMUNE SYSTEM 08-JAN-24 8RMO TITLE CRYSTAL STRUCTURE OF ANTI-FLAG M2 FAB FRAGMENT BOUND TO FLAG-TAG TITLE 2 PEPTIDE EPITOPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAG-TAG; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTI-FLAG M2 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ANTI-FLAG M2 LIGHT CHAIN; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_TAXID: 10090; SOURCE 8 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 MOL_ID: 3; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ANTIBODY FRAGMENT, PURIFICATION, FAB, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.W.BEUGELINK,B.J.C.JANSSEN,M.F.PRONKER REVDAT 3 03-JUL-24 8RMO 1 JRNL REVDAT 2 19-JUN-24 8RMO 1 JRNL REVDAT 1 03-APR-24 8RMO 0 JRNL AUTH J.W.BEUGELINK,E.SWEEP,B.J.C.JANSSEN,J.SNIJDER,M.F.PRONKER JRNL TITL STRUCTURAL BASIS FOR RECOGNITION OF THE FLAG-TAG BY JRNL TITL 2 ANTI-FLAG M2. JRNL REF J.MOL.BIOL. V. 436 68649 2024 JRNL REFN ESSN 1089-8638 JRNL PMID 38852931 JRNL DOI 10.1016/J.JMB.2024.168649 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.WOUTER BEUGELINK,E.SWEEP,B.J.C.JANSSEN,J.SNIJDER, REMARK 1 AUTH 2 M.F.PRONKER REMARK 1 TITL STRUCTURAL BASIS FOR RECOGNITION OF THE FLAG-TAG BY REMARK 1 TITL 2 ANTI-FLAG M2. REMARK 1 REF J.MOL.BIOL. 68649 2024 REMARK 1 REFN ESSN 1089-8638 REMARK 1 PMID 38852931 REMARK 1 DOI 10.1016/J.JMB.2024.168649 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.W.BEUGELINK,E.SWEEP,B.J.C.JANSSEN,J.SNIJDER,M.F.PRONKER REMARK 1 TITL STRUCTURAL BASIS FOR RECOGNITION OF THE FLAG-1 TAG BY REMARK 1 TITL 2 ANTI-FLAG M2 REMARK 1 REF BIORXIV 2024 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2024.03.25.586599 REMARK 2 REMARK 2 RESOLUTION. 1.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 71.1 REMARK 3 NUMBER OF REFLECTIONS : 120660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 6057 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 557 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 4.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3257 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 517 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.28600 REMARK 3 B22 (A**2) : 2.61900 REMARK 3 B33 (A**2) : 1.66700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3610 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3235 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4951 ; 1.564 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7523 ; 1.066 ; 1.567 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 473 ; 7.234 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 20 ;16.027 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 576 ;12.419 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 540 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4347 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 837 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 579 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 44 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1688 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 405 ; 0.187 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1832 ; 1.901 ; 2.282 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1832 ; 1.892 ; 2.282 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2325 ; 2.688 ; 4.078 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2326 ; 2.687 ; 4.080 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1778 ; 2.026 ; 2.535 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1779 ; 2.025 ; 2.537 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2626 ; 2.824 ; 4.533 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2627 ; 2.824 ; 4.535 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6845 ; 4.235 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT FILE REMARK 4 REMARK 4 8RMO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1292135757. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.6199 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 123223 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.163 REMARK 200 RESOLUTION RANGE LOW (A) : 73.326 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 36.99 REMARK 200 R MERGE (I) : 0.15100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5250 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 6.86700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.526 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RHOMBOHEDRON, ~250X150X50 MICRONS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS 8 PH, 20 %W/V PEG 6K, 0.2 M REMARK 280 NH4CL, PH 8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.71600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.31050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.71600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.31050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP F 7 REMARK 465 LYS F 8 REMARK 465 GLY H 131 REMARK 465 SER H 132 REMARK 465 ALA H 133 REMARK 465 ALA H 134 REMARK 465 GLN H 135 REMARK 465 THR H 136 REMARK 465 ASN H 137 REMARK 465 SER H 190 REMARK 465 THR H 191 REMARK 465 TRP H 192 REMARK 465 ARG H 217 REMARK 465 ALA H 218 REMARK 465 ALA H 219 REMARK 465 ALA H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 465 HIS L 203 REMARK 465 LYS L 204 REMARK 465 THR L 205 REMARK 465 SER L 206 REMARK 465 THR L 207 REMARK 465 SER L 208 REMARK 465 GLN L 218 REMARK 465 CYS L 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS L 31 H ASN L 33 1.23 REMARK 500 H TYR H 104 HH TYR L 41 1.23 REMARK 500 HE22 GLN L 129 HG SER L 136 1.29 REMARK 500 HD21 ASN H 84 HG SER H 85 1.30 REMARK 500 O HOH H 506 O HOH H 546 1.90 REMARK 500 O HOH H 458 O HOH H 549 1.96 REMARK 500 O HOH H 442 O HOH H 500 2.03 REMARK 500 O HOH L 395 O HOH L 417 2.10 REMARK 500 O HOH H 419 O HOH H 624 2.13 REMARK 500 O HOH H 451 O HOH H 575 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS H 100 75.84 -153.36 REMARK 500 LYS H 100 75.84 -154.88 REMARK 500 PHE H 101 -2.73 85.14 REMARK 500 VAL L 56 -54.58 77.51 REMARK 500 ARG L 216 -164.11 -160.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG H 13 0.17 SIDE CHAIN REMARK 500 ARG L 82 0.15 SIDE CHAIN REMARK 500 ARG L 193 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG L 59 -11.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 676 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH L 523 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH L 524 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH L 525 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH L 526 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH L 527 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH L 528 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH L 529 DISTANCE = 6.88 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7BG1 RELATED DB: PDB REMARK 900 PREVIOUS APO STRUCTURE DBREF 8RMO F 1 8 PDB 8RMO 8RMO 1 8 DBREF 8RMO H 1 228 PDB 8RMO 8RMO 1 228 DBREF 8RMO L 1 219 PDB 8RMO 8RMO 1 219 SEQRES 1 F 8 ASP TYR LYS ASP ASP ASP ASP LYS SEQRES 1 H 228 PCA VAL GLN LEU GLN GLN SER ALA ALA GLU LEU ALA ARG SEQRES 2 H 228 PRO GLY ALA SER VAL LYS MET SER CYS LYS ALA SER GLY SEQRES 3 H 228 TYR SER PHE THR THR TYR THR ILE HIS TRP VAL LYS GLN SEQRES 4 H 228 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY TYR ILE ASN SEQRES 5 H 228 PRO SER SER GLY TYR ALA ALA TYR ASN GLN ASN PHE LYS SEQRES 6 H 228 ASP GLU THR THR LEU THR ALA ASP PRO SER SER SER THR SEQRES 7 H 228 ALA TYR MET GLU LEU ASN SER LEU THR SER GLU ASP SER SEQRES 8 H 228 ALA VAL TYR TYR CYS ALA ARG GLU LYS PHE TYR GLY TYR SEQRES 9 H 228 ASP TYR TRP GLY GLN GLY ALA THR LEU THR VAL SER SER SEQRES 10 H 228 ALA SER THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO SEQRES 11 H 228 GLY SER ALA ALA GLN THR ASN SER MET VAL THR LEU GLY SEQRES 12 H 228 CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 H 228 THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR SEQRES 14 H 228 PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SEQRES 15 H 228 SER SER VAL THR VAL PRO SER SER THR TRP PRO SER GLN SEQRES 16 H 228 THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER THR SEQRES 17 H 228 LYS VAL ASP LYS LYS ILE VAL PRO ARG ALA ALA ALA HIS SEQRES 18 H 228 HIS HIS HIS HIS HIS HIS HIS SEQRES 1 L 219 ASP VAL LEU MET THR GLN ILE PRO LEU SER LEU PRO VAL SEQRES 2 L 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER ILE VAL HIS ARG ASN GLY ASN THR TYR LEU GLU SEQRES 4 L 219 TRP TYR LEU LEU LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 219 TYR CYS PHE GLN GLY SER HIS VAL PRO TYR THR PHE GLY SEQRES 9 L 219 GLY GLY THR LYS LEU GLU ILE ARG ARG ALA ASP ALA ALA SEQRES 10 L 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLN CYS HET PCA H 1 14 HET CL H 301 1 HET CL H 302 1 HET CL H 303 1 HETNAM PCA PYROGLUTAMIC ACID HETNAM CL CHLORIDE ION FORMUL 2 PCA C5 H7 N O3 FORMUL 4 CL 3(CL 1-) FORMUL 7 HOH *517(H2 O) HELIX 1 AA1 ASP F 1 ASP F 6 5 6 HELIX 2 AA2 SER H 28 TYR H 32 5 5 HELIX 3 AA3 PHE H 64 ASP H 66 5 3 HELIX 4 AA4 PRO H 74 SER H 76 5 3 HELIX 5 AA5 THR H 87 SER H 91 5 5 HELIX 6 AA6 SER H 160 SER H 162 5 3 HELIX 7 AA7 PRO H 204 SER H 207 5 4 HELIX 8 AA8 GLU L 84 LEU L 88 5 5 HELIX 9 AA9 SER L 126 SER L 132 1 7 HELIX 10 AB1 LYS L 188 ARG L 193 1 6 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AA1 4 THR H 78 LEU H 83 -1 O MET H 81 N MET H 20 SHEET 4 AA1 4 THR H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AA2 6 GLU H 10 ALA H 12 0 SHEET 2 AA2 6 ALA H 111 VAL H 115 1 O THR H 114 N ALA H 12 SHEET 3 AA2 6 ALA H 92 GLU H 99 -1 N ALA H 92 O LEU H 113 SHEET 4 AA2 6 THR H 33 GLN H 39 -1 N GLN H 39 O VAL H 93 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O ILE H 48 N TRP H 36 SHEET 6 AA2 6 ALA H 58 TYR H 60 -1 O ALA H 59 N TYR H 50 SHEET 1 AA3 4 SER H 124 LEU H 128 0 SHEET 2 AA3 4 MET H 139 TYR H 149 -1 O LEU H 145 N TYR H 126 SHEET 3 AA3 4 LEU H 178 PRO H 188 -1 O LEU H 181 N VAL H 146 SHEET 4 AA3 4 VAL H 167 THR H 169 -1 N HIS H 168 O SER H 184 SHEET 1 AA4 4 SER H 124 LEU H 128 0 SHEET 2 AA4 4 MET H 139 TYR H 149 -1 O LEU H 145 N TYR H 126 SHEET 3 AA4 4 LEU H 178 PRO H 188 -1 O LEU H 181 N VAL H 146 SHEET 4 AA4 4 VAL H 173 GLN H 175 -1 N GLN H 175 O LEU H 178 SHEET 1 AA5 3 THR H 155 TRP H 158 0 SHEET 2 AA5 3 THR H 198 HIS H 203 -1 O ALA H 202 N THR H 155 SHEET 3 AA5 3 THR H 208 LYS H 213 -1 O VAL H 210 N VAL H 201 SHEET 1 AA6 4 MET L 4 ILE L 7 0 SHEET 2 AA6 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA6 4 ASP L 75 ILE L 80 -1 O PHE L 76 N CYS L 23 SHEET 4 AA6 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 AA7 6 SER L 10 SER L 14 0 SHEET 2 AA7 6 THR L 107 ARG L 112 1 O LYS L 108 N LEU L 11 SHEET 3 AA7 6 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 AA7 6 LEU L 38 LEU L 43 -1 N LEU L 43 O VAL L 90 SHEET 5 AA7 6 LYS L 50 TYR L 54 -1 O LEU L 52 N TRP L 40 SHEET 6 AA7 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 AA8 4 SER L 10 SER L 14 0 SHEET 2 AA8 4 THR L 107 ARG L 112 1 O LYS L 108 N LEU L 11 SHEET 3 AA8 4 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 AA8 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 AA9 4 THR L 119 PHE L 123 0 SHEET 2 AA9 4 GLY L 134 PHE L 144 -1 O ASN L 142 N THR L 119 SHEET 3 AA9 4 TYR L 178 THR L 187 -1 O LEU L 184 N VAL L 137 SHEET 4 AA9 4 VAL L 164 TRP L 168 -1 N LEU L 165 O THR L 183 SHEET 1 AB1 4 SER L 158 ARG L 160 0 SHEET 2 AB1 4 ASN L 150 ILE L 155 -1 N ILE L 155 O SER L 158 SHEET 3 AB1 4 SER L 196 THR L 202 -1 O THR L 198 N LYS L 154 SHEET 4 AB1 4 ILE L 210 ASN L 215 -1 O ILE L 210 N ALA L 201 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.11 SSBOND 2 CYS H 144 CYS H 199 1555 1555 1.82 SSBOND 3 CYS L 23 CYS L 93 1555 1555 2.15 SSBOND 4 CYS L 139 CYS L 199 1555 1555 2.06 LINK C PCA H 1 N VAL H 2 1555 1555 1.35 CISPEP 1 PHE H 150 PRO H 151 0 -8.97 CISPEP 2 GLU H 152 PRO H 153 0 -13.15 CISPEP 3 GLU H 152 PRO H 153 0 -0.98 CISPEP 4 ILE L 7 PRO L 8 0 -3.03 CISPEP 5 VAL L 99 PRO L 100 0 -1.98 CISPEP 6 TYR L 145 PRO L 146 0 1.60 CRYST1 87.432 134.621 41.798 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011437 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023925 0.00000