data_8RND # _entry.id 8RND # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.393 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8RND pdb_00008rnd 10.2210/pdb8rnd/pdb WWPDB D_1292134769 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-06-05 2 'Structure model' 1 1 2024-06-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8RND _pdbx_database_status.recvd_initial_deposition_date 2024-01-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 8PI3 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 5 _pdbx_contact_author.email elisa.oricchio@epfl.ch _pdbx_contact_author.name_first Elisa _pdbx_contact_author.name_last Oricchio _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1690-0447 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Petruzzella, A.' 1 0000-0002-7616-2271 'Lau, K.' 2 0000-0002-9040-7597 'Pojer, F.' 3 0000-0002-9183-7206 'Oricchio, E.' 4 0000-0002-1690-0447 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Antibody-peptide conjugates deliver covalent inhibitors blocking oncogenic cathepsins.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-024-01627-z _citation.pdbx_database_id_PubMed 38811854 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Petruzzella, A.' 1 ? primary 'Bruand, M.' 2 ? primary 'Santamaria-Martinez, A.' 3 ? primary 'Katanayeva, N.' 4 ? primary 'Reymond, L.' 5 ? primary 'Wehrle, S.' 6 ? primary 'Georgeon, S.' 7 ? primary 'Inel, D.' 8 ? primary 'van Dalen, F.J.' 9 ? primary 'Viertl, D.' 10 ? primary 'Lau, K.' 11 ? primary 'Pojer, F.' 12 ? primary 'Schottelius, M.' 13 ? primary 'Zoete, V.' 14 ? primary 'Verdoes, M.' 15 ? primary 'Arber, C.' 16 ? primary 'Correia, B.E.' 17 ? primary 'Oricchio, E.' 18 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cathepsin S' 24689.689 1 3.4.22.27 ? ? ? 2 polymer syn 'NNPI-C10 inhibitor' 1210.500 1 ? ? ? ? 3 non-polymer man 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 4 non-polymer man 'TRIETHYLENE GLYCOL' 150.173 1 ? ? ? ? 5 non-polymer syn 'NITRATE ION' 62.005 1 ? ? ? ? 6 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 7 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 8 water nat water 18.015 110 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SNPNRILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTA FQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYY EPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI ; ;SNPNRILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTA FQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYY EPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI ; A ? 2 'polypeptide(L)' no yes '(ACE)(A1H5W)KHRM(YWF)VMW(NH2)' XXKHRMXVMWX B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 1,2-ETHANEDIOL EDO 4 'TRIETHYLENE GLYCOL' PGE 5 'NITRATE ION' NO3 6 GLYCEROL GOL 7 'DI(HYDROXYETHYL)ETHER' PEG 8 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 PRO n 1 4 ASN n 1 5 ARG n 1 6 ILE n 1 7 LEU n 1 8 PRO n 1 9 ASP n 1 10 SER n 1 11 VAL n 1 12 ASP n 1 13 TRP n 1 14 ARG n 1 15 GLU n 1 16 LYS n 1 17 GLY n 1 18 CYS n 1 19 VAL n 1 20 THR n 1 21 GLU n 1 22 VAL n 1 23 LYS n 1 24 TYR n 1 25 GLN n 1 26 GLY n 1 27 SER n 1 28 CYS n 1 29 GLY n 1 30 ALA n 1 31 CYS n 1 32 TRP n 1 33 ALA n 1 34 PHE n 1 35 SER n 1 36 ALA n 1 37 VAL n 1 38 GLY n 1 39 ALA n 1 40 LEU n 1 41 GLU n 1 42 ALA n 1 43 GLN n 1 44 LEU n 1 45 LYS n 1 46 LEU n 1 47 LYS n 1 48 THR n 1 49 GLY n 1 50 LYS n 1 51 LEU n 1 52 VAL n 1 53 SER n 1 54 LEU n 1 55 SER n 1 56 ALA n 1 57 GLN n 1 58 ASN n 1 59 LEU n 1 60 VAL n 1 61 ASP n 1 62 CYS n 1 63 SER n 1 64 THR n 1 65 GLU n 1 66 LYS n 1 67 TYR n 1 68 GLY n 1 69 ASN n 1 70 LYS n 1 71 GLY n 1 72 CYS n 1 73 ASN n 1 74 GLY n 1 75 GLY n 1 76 PHE n 1 77 MET n 1 78 THR n 1 79 THR n 1 80 ALA n 1 81 PHE n 1 82 GLN n 1 83 TYR n 1 84 ILE n 1 85 ILE n 1 86 ASP n 1 87 ASN n 1 88 LYS n 1 89 GLY n 1 90 ILE n 1 91 ASP n 1 92 SER n 1 93 ASP n 1 94 ALA n 1 95 SER n 1 96 TYR n 1 97 PRO n 1 98 TYR n 1 99 LYS n 1 100 ALA n 1 101 MET n 1 102 ASP n 1 103 GLN n 1 104 LYS n 1 105 CYS n 1 106 GLN n 1 107 TYR n 1 108 ASP n 1 109 SER n 1 110 LYS n 1 111 TYR n 1 112 ARG n 1 113 ALA n 1 114 ALA n 1 115 THR n 1 116 CYS n 1 117 SER n 1 118 LYS n 1 119 TYR n 1 120 THR n 1 121 GLU n 1 122 LEU n 1 123 PRO n 1 124 TYR n 1 125 GLY n 1 126 ARG n 1 127 GLU n 1 128 ASP n 1 129 VAL n 1 130 LEU n 1 131 LYS n 1 132 GLU n 1 133 ALA n 1 134 VAL n 1 135 ALA n 1 136 ASN n 1 137 LYS n 1 138 GLY n 1 139 PRO n 1 140 VAL n 1 141 SER n 1 142 VAL n 1 143 GLY n 1 144 VAL n 1 145 ASP n 1 146 ALA n 1 147 ARG n 1 148 HIS n 1 149 PRO n 1 150 SER n 1 151 PHE n 1 152 PHE n 1 153 LEU n 1 154 TYR n 1 155 ARG n 1 156 SER n 1 157 GLY n 1 158 VAL n 1 159 TYR n 1 160 TYR n 1 161 GLU n 1 162 PRO n 1 163 SER n 1 164 CYS n 1 165 THR n 1 166 GLN n 1 167 ASN n 1 168 VAL n 1 169 ASN n 1 170 HIS n 1 171 GLY n 1 172 VAL n 1 173 LEU n 1 174 VAL n 1 175 VAL n 1 176 GLY n 1 177 TYR n 1 178 GLY n 1 179 ASP n 1 180 LEU n 1 181 ASN n 1 182 GLY n 1 183 LYS n 1 184 GLU n 1 185 TYR n 1 186 TRP n 1 187 LEU n 1 188 VAL n 1 189 LYS n 1 190 ASN n 1 191 SER n 1 192 TRP n 1 193 GLY n 1 194 HIS n 1 195 ASN n 1 196 PHE n 1 197 GLY n 1 198 GLU n 1 199 GLU n 1 200 GLY n 1 201 TYR n 1 202 ILE n 1 203 ARG n 1 204 MET n 1 205 ALA n 1 206 ARG n 1 207 ASN n 1 208 LYS n 1 209 GLY n 1 210 ASN n 1 211 HIS n 1 212 CYS n 1 213 GLY n 1 214 ILE n 1 215 ALA n 1 216 SER n 1 217 PHE n 1 218 PRO n 1 219 SER n 1 220 TYR n 1 221 PRO n 1 222 GLU n 1 223 ILE n 2 1 ACE n 2 2 A1H5W n 2 3 LYS n 2 4 HIS n 2 5 ARG n 2 6 MET n 2 7 YWF n 2 8 VAL n 2 9 MET n 2 10 TRP n 2 11 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 223 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CTSS _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cricetulus griseus' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 10029 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ExpiCHO _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1H5W 'L-peptide linking' n 3-azido-L-alanine ? 'C3 H7 N4 O2 1' 131.113 ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 NO3 non-polymer . 'NITRATE ION' ? 'N O3 -1' 62.005 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YWF 'peptide linking' n 'gamma-aminobutenoic acid' '(E)-4-azanylbut-2-enoic acid' 'C4 H7 N O2' 101.104 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 109 ? ? ? A . n A 1 2 ASN 2 110 ? ? ? A . n A 1 3 PRO 3 111 ? ? ? A . n A 1 4 ASN 4 112 ? ? ? A . n A 1 5 ARG 5 113 113 ARG ARG A . n A 1 6 ILE 6 114 114 ILE ILE A . n A 1 7 LEU 7 115 115 LEU LEU A . n A 1 8 PRO 8 116 116 PRO PRO A . n A 1 9 ASP 9 117 117 ASP ASP A . n A 1 10 SER 10 118 118 SER SER A . n A 1 11 VAL 11 119 119 VAL VAL A . n A 1 12 ASP 12 120 120 ASP ASP A . n A 1 13 TRP 13 121 121 TRP TRP A . n A 1 14 ARG 14 122 122 ARG ARG A . n A 1 15 GLU 15 123 123 GLU GLU A . n A 1 16 LYS 16 124 124 LYS LYS A . n A 1 17 GLY 17 125 125 GLY GLY A . n A 1 18 CYS 18 126 126 CYS CYS A . n A 1 19 VAL 19 127 127 VAL VAL A . n A 1 20 THR 20 128 128 THR THR A . n A 1 21 GLU 21 129 129 GLU GLU A . n A 1 22 VAL 22 130 130 VAL VAL A . n A 1 23 LYS 23 131 131 LYS LYS A . n A 1 24 TYR 24 132 132 TYR TYR A . n A 1 25 GLN 25 133 133 GLN GLN A . n A 1 26 GLY 26 134 134 GLY GLY A . n A 1 27 SER 27 135 135 SER SER A . n A 1 28 CYS 28 136 136 CYS CYS A . n A 1 29 GLY 29 137 137 GLY GLY A . n A 1 30 ALA 30 138 138 ALA ALA A . n A 1 31 CYS 31 139 139 CYS CYS A . n A 1 32 TRP 32 140 140 TRP TRP A . n A 1 33 ALA 33 141 141 ALA ALA A . n A 1 34 PHE 34 142 142 PHE PHE A . n A 1 35 SER 35 143 143 SER SER A . n A 1 36 ALA 36 144 144 ALA ALA A . n A 1 37 VAL 37 145 145 VAL VAL A . n A 1 38 GLY 38 146 146 GLY GLY A . n A 1 39 ALA 39 147 147 ALA ALA A . n A 1 40 LEU 40 148 148 LEU LEU A . n A 1 41 GLU 41 149 149 GLU GLU A . n A 1 42 ALA 42 150 150 ALA ALA A . n A 1 43 GLN 43 151 151 GLN GLN A . n A 1 44 LEU 44 152 152 LEU LEU A . n A 1 45 LYS 45 153 153 LYS LYS A . n A 1 46 LEU 46 154 154 LEU LEU A . n A 1 47 LYS 47 155 155 LYS LYS A . n A 1 48 THR 48 156 156 THR THR A . n A 1 49 GLY 49 157 157 GLY GLY A . n A 1 50 LYS 50 158 158 LYS LYS A . n A 1 51 LEU 51 159 159 LEU LEU A . n A 1 52 VAL 52 160 160 VAL VAL A . n A 1 53 SER 53 161 161 SER SER A . n A 1 54 LEU 54 162 162 LEU LEU A . n A 1 55 SER 55 163 163 SER SER A . n A 1 56 ALA 56 164 164 ALA ALA A . n A 1 57 GLN 57 165 165 GLN GLN A . n A 1 58 ASN 58 166 166 ASN ASN A . n A 1 59 LEU 59 167 167 LEU LEU A . n A 1 60 VAL 60 168 168 VAL VAL A . n A 1 61 ASP 61 169 169 ASP ASP A . n A 1 62 CYS 62 170 170 CYS CYS A . n A 1 63 SER 63 171 171 SER SER A . n A 1 64 THR 64 172 172 THR THR A . n A 1 65 GLU 65 173 173 GLU GLU A . n A 1 66 LYS 66 174 174 LYS LYS A . n A 1 67 TYR 67 175 175 TYR TYR A . n A 1 68 GLY 68 176 176 GLY GLY A . n A 1 69 ASN 69 177 177 ASN ASN A . n A 1 70 LYS 70 178 178 LYS LYS A . n A 1 71 GLY 71 179 179 GLY GLY A . n A 1 72 CYS 72 180 180 CYS CYS A . n A 1 73 ASN 73 181 181 ASN ASN A . n A 1 74 GLY 74 182 182 GLY GLY A . n A 1 75 GLY 75 183 183 GLY GLY A . n A 1 76 PHE 76 184 184 PHE PHE A . n A 1 77 MET 77 185 185 MET MET A . n A 1 78 THR 78 186 186 THR THR A . n A 1 79 THR 79 187 187 THR THR A . n A 1 80 ALA 80 188 188 ALA ALA A . n A 1 81 PHE 81 189 189 PHE PHE A . n A 1 82 GLN 82 190 190 GLN GLN A . n A 1 83 TYR 83 191 191 TYR TYR A . n A 1 84 ILE 84 192 192 ILE ILE A . n A 1 85 ILE 85 193 193 ILE ILE A . n A 1 86 ASP 86 194 194 ASP ASP A . n A 1 87 ASN 87 195 195 ASN ASN A . n A 1 88 LYS 88 196 196 LYS LYS A . n A 1 89 GLY 89 197 197 GLY GLY A . n A 1 90 ILE 90 198 198 ILE ILE A . n A 1 91 ASP 91 199 199 ASP ASP A . n A 1 92 SER 92 200 200 SER SER A . n A 1 93 ASP 93 201 201 ASP ASP A . n A 1 94 ALA 94 202 202 ALA ALA A . n A 1 95 SER 95 203 203 SER SER A . n A 1 96 TYR 96 204 204 TYR TYR A . n A 1 97 PRO 97 205 205 PRO PRO A . n A 1 98 TYR 98 206 206 TYR TYR A . n A 1 99 LYS 99 207 207 LYS LYS A . n A 1 100 ALA 100 208 208 ALA ALA A . n A 1 101 MET 101 209 209 MET MET A . n A 1 102 ASP 102 210 210 ASP ASP A . n A 1 103 GLN 103 211 211 GLN GLN A . n A 1 104 LYS 104 212 212 LYS LYS A . n A 1 105 CYS 105 213 213 CYS CYS A . n A 1 106 GLN 106 214 214 GLN GLN A . n A 1 107 TYR 107 215 215 TYR TYR A . n A 1 108 ASP 108 216 216 ASP ASP A . n A 1 109 SER 109 217 217 SER SER A . n A 1 110 LYS 110 218 218 LYS LYS A . n A 1 111 TYR 111 219 219 TYR TYR A . n A 1 112 ARG 112 220 220 ARG ARG A . n A 1 113 ALA 113 221 221 ALA ALA A . n A 1 114 ALA 114 222 222 ALA ALA A . n A 1 115 THR 115 223 223 THR THR A . n A 1 116 CYS 116 224 224 CYS CYS A . n A 1 117 SER 117 225 225 SER SER A . n A 1 118 LYS 118 226 226 LYS LYS A . n A 1 119 TYR 119 227 227 TYR TYR A . n A 1 120 THR 120 228 228 THR THR A . n A 1 121 GLU 121 229 229 GLU GLU A . n A 1 122 LEU 122 230 230 LEU LEU A . n A 1 123 PRO 123 231 231 PRO PRO A . n A 1 124 TYR 124 232 232 TYR TYR A . n A 1 125 GLY 125 233 233 GLY GLY A . n A 1 126 ARG 126 234 234 ARG ARG A . n A 1 127 GLU 127 235 235 GLU GLU A . n A 1 128 ASP 128 236 236 ASP ASP A . n A 1 129 VAL 129 237 237 VAL VAL A . n A 1 130 LEU 130 238 238 LEU LEU A . n A 1 131 LYS 131 239 239 LYS LYS A . n A 1 132 GLU 132 240 240 GLU GLU A . n A 1 133 ALA 133 241 241 ALA ALA A . n A 1 134 VAL 134 242 242 VAL VAL A . n A 1 135 ALA 135 243 243 ALA ALA A . n A 1 136 ASN 136 244 244 ASN ASN A . n A 1 137 LYS 137 245 245 LYS LYS A . n A 1 138 GLY 138 246 246 GLY GLY A . n A 1 139 PRO 139 247 247 PRO PRO A . n A 1 140 VAL 140 248 248 VAL VAL A . n A 1 141 SER 141 249 249 SER SER A . n A 1 142 VAL 142 250 250 VAL VAL A . n A 1 143 GLY 143 251 251 GLY GLY A . n A 1 144 VAL 144 252 252 VAL VAL A . n A 1 145 ASP 145 253 253 ASP ASP A . n A 1 146 ALA 146 254 254 ALA ALA A . n A 1 147 ARG 147 255 255 ARG ARG A . n A 1 148 HIS 148 256 256 HIS HIS A . n A 1 149 PRO 149 257 257 PRO PRO A . n A 1 150 SER 150 258 258 SER SER A . n A 1 151 PHE 151 259 259 PHE PHE A . n A 1 152 PHE 152 260 260 PHE PHE A . n A 1 153 LEU 153 261 261 LEU LEU A . n A 1 154 TYR 154 262 262 TYR TYR A . n A 1 155 ARG 155 263 263 ARG ARG A . n A 1 156 SER 156 264 264 SER SER A . n A 1 157 GLY 157 265 265 GLY GLY A . n A 1 158 VAL 158 266 266 VAL VAL A . n A 1 159 TYR 159 267 267 TYR TYR A . n A 1 160 TYR 160 268 268 TYR TYR A . n A 1 161 GLU 161 269 269 GLU GLU A . n A 1 162 PRO 162 270 270 PRO PRO A . n A 1 163 SER 163 271 271 SER SER A . n A 1 164 CYS 164 272 272 CYS CYS A . n A 1 165 THR 165 273 273 THR THR A . n A 1 166 GLN 166 274 274 GLN GLN A . n A 1 167 ASN 167 275 275 ASN ASN A . n A 1 168 VAL 168 276 276 VAL VAL A . n A 1 169 ASN 169 277 277 ASN ASN A . n A 1 170 HIS 170 278 278 HIS HIS A . n A 1 171 GLY 171 279 279 GLY GLY A . n A 1 172 VAL 172 280 280 VAL VAL A . n A 1 173 LEU 173 281 281 LEU LEU A . n A 1 174 VAL 174 282 282 VAL VAL A . n A 1 175 VAL 175 283 283 VAL VAL A . n A 1 176 GLY 176 284 284 GLY GLY A . n A 1 177 TYR 177 285 285 TYR TYR A . n A 1 178 GLY 178 286 286 GLY GLY A . n A 1 179 ASP 179 287 287 ASP ASP A . n A 1 180 LEU 180 288 288 LEU LEU A . n A 1 181 ASN 181 289 289 ASN ASN A . n A 1 182 GLY 182 290 290 GLY GLY A . n A 1 183 LYS 183 291 291 LYS LYS A . n A 1 184 GLU 184 292 292 GLU GLU A . n A 1 185 TYR 185 293 293 TYR TYR A . n A 1 186 TRP 186 294 294 TRP TRP A . n A 1 187 LEU 187 295 295 LEU LEU A . n A 1 188 VAL 188 296 296 VAL VAL A . n A 1 189 LYS 189 297 297 LYS LYS A . n A 1 190 ASN 190 298 298 ASN ASN A . n A 1 191 SER 191 299 299 SER SER A . n A 1 192 TRP 192 300 300 TRP TRP A . n A 1 193 GLY 193 301 301 GLY GLY A . n A 1 194 HIS 194 302 302 HIS HIS A . n A 1 195 ASN 195 303 303 ASN ASN A . n A 1 196 PHE 196 304 304 PHE PHE A . n A 1 197 GLY 197 305 305 GLY GLY A . n A 1 198 GLU 198 306 306 GLU GLU A . n A 1 199 GLU 199 307 307 GLU GLU A . n A 1 200 GLY 200 308 308 GLY GLY A . n A 1 201 TYR 201 309 309 TYR TYR A . n A 1 202 ILE 202 310 310 ILE ILE A . n A 1 203 ARG 203 311 311 ARG ARG A . n A 1 204 MET 204 312 312 MET MET A . n A 1 205 ALA 205 313 313 ALA ALA A . n A 1 206 ARG 206 314 314 ARG ARG A . n A 1 207 ASN 207 315 315 ASN ASN A . n A 1 208 LYS 208 316 316 LYS LYS A . n A 1 209 GLY 209 317 317 GLY GLY A . n A 1 210 ASN 210 318 318 ASN ASN A . n A 1 211 HIS 211 319 319 HIS HIS A . n A 1 212 CYS 212 320 320 CYS CYS A . n A 1 213 GLY 213 321 321 GLY GLY A . n A 1 214 ILE 214 322 322 ILE ILE A . n A 1 215 ALA 215 323 323 ALA ALA A . n A 1 216 SER 216 324 324 SER SER A . n A 1 217 PHE 217 325 325 PHE PHE A . n A 1 218 PRO 218 326 326 PRO PRO A . n A 1 219 SER 219 327 327 SER SER A . n A 1 220 TYR 220 328 328 TYR TYR A . n A 1 221 PRO 221 329 329 PRO PRO A . n A 1 222 GLU 222 330 330 GLU GLU A . n A 1 223 ILE 223 331 331 ILE ILE A . n B 2 1 ACE 1 1 1 ACE ACE B . n B 2 2 A1H5W 2 2 2 A1H5W YPB B . n B 2 3 LYS 3 3 3 LYS LYS B . n B 2 4 HIS 4 4 4 HIS HIS B . n B 2 5 ARG 5 5 5 ARG ARG B . n B 2 6 MET 6 6 6 MET MET B . n B 2 7 YWF 7 7 7 YWF YWF B . n B 2 8 VAL 8 8 8 VAL VAL B . n B 2 9 MET 9 9 9 MET MET B . n B 2 10 TRP 10 10 10 TRP TRP B . n B 2 11 NH2 11 11 11 NH2 NH2 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO 1 401 411 EDO EDO A . D 4 PGE 1 402 412 PGE PGE A . E 3 EDO 1 403 414 EDO EDO A . F 3 EDO 1 404 415 EDO EDO A . G 5 NO3 1 405 416 NO3 NO3 A . H 6 GOL 1 406 417 GOL GOL A . I 7 PEG 1 407 418 PEG PEG A . J 3 EDO 1 408 419 EDO EDO A . K 8 HOH 1 501 70 HOH HOH A . K 8 HOH 2 502 95 HOH HOH A . K 8 HOH 3 503 81 HOH HOH A . K 8 HOH 4 504 103 HOH HOH A . K 8 HOH 5 505 93 HOH HOH A . K 8 HOH 6 506 98 HOH HOH A . K 8 HOH 7 507 36 HOH HOH A . K 8 HOH 8 508 64 HOH HOH A . K 8 HOH 9 509 76 HOH HOH A . K 8 HOH 10 510 66 HOH HOH A . K 8 HOH 11 511 42 HOH HOH A . K 8 HOH 12 512 50 HOH HOH A . K 8 HOH 13 513 14 HOH HOH A . K 8 HOH 14 514 24 HOH HOH A . K 8 HOH 15 515 57 HOH HOH A . K 8 HOH 16 516 72 HOH HOH A . K 8 HOH 17 517 39 HOH HOH A . K 8 HOH 18 518 23 HOH HOH A . K 8 HOH 19 519 25 HOH HOH A . K 8 HOH 20 520 58 HOH HOH A . K 8 HOH 21 521 60 HOH HOH A . K 8 HOH 22 522 94 HOH HOH A . K 8 HOH 23 523 7 HOH HOH A . K 8 HOH 24 524 5 HOH HOH A . K 8 HOH 25 525 47 HOH HOH A . K 8 HOH 26 526 106 HOH HOH A . K 8 HOH 27 527 43 HOH HOH A . K 8 HOH 28 528 107 HOH HOH A . K 8 HOH 29 529 69 HOH HOH A . K 8 HOH 30 530 17 HOH HOH A . K 8 HOH 31 531 37 HOH HOH A . K 8 HOH 32 532 61 HOH HOH A . K 8 HOH 33 533 13 HOH HOH A . K 8 HOH 34 534 28 HOH HOH A . K 8 HOH 35 535 41 HOH HOH A . K 8 HOH 36 536 63 HOH HOH A . K 8 HOH 37 537 77 HOH HOH A . K 8 HOH 38 538 45 HOH HOH A . K 8 HOH 39 539 3 HOH HOH A . K 8 HOH 40 540 102 HOH HOH A . K 8 HOH 41 541 11 HOH HOH A . K 8 HOH 42 542 48 HOH HOH A . K 8 HOH 43 543 40 HOH HOH A . K 8 HOH 44 544 19 HOH HOH A . K 8 HOH 45 545 1 HOH HOH A . K 8 HOH 46 546 71 HOH HOH A . K 8 HOH 47 547 2 HOH HOH A . K 8 HOH 48 548 20 HOH HOH A . K 8 HOH 49 549 100 HOH HOH A . K 8 HOH 50 550 56 HOH HOH A . K 8 HOH 51 551 67 HOH HOH A . K 8 HOH 52 552 8 HOH HOH A . K 8 HOH 53 553 27 HOH HOH A . K 8 HOH 54 554 52 HOH HOH A . K 8 HOH 55 555 22 HOH HOH A . K 8 HOH 56 556 12 HOH HOH A . K 8 HOH 57 557 16 HOH HOH A . K 8 HOH 58 558 62 HOH HOH A . K 8 HOH 59 559 82 HOH HOH A . K 8 HOH 60 560 18 HOH HOH A . K 8 HOH 61 561 10 HOH HOH A . K 8 HOH 62 562 53 HOH HOH A . K 8 HOH 63 563 26 HOH HOH A . K 8 HOH 64 564 87 HOH HOH A . K 8 HOH 65 565 32 HOH HOH A . K 8 HOH 66 566 30 HOH HOH A . K 8 HOH 67 567 15 HOH HOH A . K 8 HOH 68 568 21 HOH HOH A . K 8 HOH 69 569 85 HOH HOH A . K 8 HOH 70 570 108 HOH HOH A . K 8 HOH 71 571 96 HOH HOH A . K 8 HOH 72 572 4 HOH HOH A . K 8 HOH 73 573 51 HOH HOH A . K 8 HOH 74 574 83 HOH HOH A . K 8 HOH 75 575 88 HOH HOH A . K 8 HOH 76 576 59 HOH HOH A . K 8 HOH 77 577 6 HOH HOH A . K 8 HOH 78 578 34 HOH HOH A . K 8 HOH 79 579 46 HOH HOH A . K 8 HOH 80 580 97 HOH HOH A . K 8 HOH 81 581 33 HOH HOH A . K 8 HOH 82 582 9 HOH HOH A . K 8 HOH 83 583 99 HOH HOH A . K 8 HOH 84 584 38 HOH HOH A . K 8 HOH 85 585 55 HOH HOH A . K 8 HOH 86 586 31 HOH HOH A . K 8 HOH 87 587 65 HOH HOH A . K 8 HOH 88 588 54 HOH HOH A . K 8 HOH 89 589 86 HOH HOH A . K 8 HOH 90 590 29 HOH HOH A . K 8 HOH 91 591 49 HOH HOH A . K 8 HOH 92 592 44 HOH HOH A . K 8 HOH 93 593 75 HOH HOH A . K 8 HOH 94 594 91 HOH HOH A . K 8 HOH 95 595 105 HOH HOH A . K 8 HOH 96 596 110 HOH HOH A . K 8 HOH 97 597 92 HOH HOH A . K 8 HOH 98 598 109 HOH HOH A . K 8 HOH 99 599 101 HOH HOH A . K 8 HOH 100 600 78 HOH HOH A . K 8 HOH 101 601 80 HOH HOH A . K 8 HOH 102 602 68 HOH HOH A . K 8 HOH 103 603 90 HOH HOH A . K 8 HOH 104 604 79 HOH HOH A . K 8 HOH 105 605 89 HOH HOH A . K 8 HOH 106 606 74 HOH HOH A . K 8 HOH 107 607 73 HOH HOH A . K 8 HOH 108 608 84 HOH HOH A . L 8 HOH 1 101 35 HOH HOH B . L 8 HOH 2 102 111 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? dev_5246 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8RND _cell.details ? _cell.formula_units_Z ? _cell.length_a 44.633 _cell.length_a_esd ? _cell.length_b 129.220 _cell.length_b_esd ? _cell.length_c 37.670 _cell.length_c_esd ? _cell.volume 217260.831 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8RND _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8RND _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.09 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M BisTris Propane pH 6.5, 0.2 M NaNO3, 20% w/v PEG3350, 10% ethylene glycol' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 277 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-06-18 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000002 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.000002 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate 15.95 _reflns.entry_id 8RND _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.56 _reflns.d_resolution_low 42.19 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 60215 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.7 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.67 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.143 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.56 _reflns_shell.d_res_low 1.64 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.31 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 9679 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.4 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.46 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.665 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 27.96 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8RND _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.56 _refine.ls_d_res_low 42.19 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 60127 _refine.ls_number_reflns_R_free 3019 _refine.ls_number_reflns_R_work 57108 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.71 _refine.ls_percent_reflns_R_free 5.02 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1735 _refine.ls_R_factor_R_free 0.2251 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1708 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.92 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.6237 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1706 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.56 _refine_hist.d_res_low 42.19 _refine_hist.number_atoms_solvent 110 _refine_hist.number_atoms_total 1943 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1743 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 90 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0092 ? 1873 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.1219 ? 2511 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0511 ? 251 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0072 ? 323 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 17.4116 ? 688 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.56 1.58 . . 133 2523 95.44 . . . . 0.3365 . . . . . . . . . . . 0.3663 'X-RAY DIFFRACTION' 1.58 1.61 . . 131 2534 99.96 . . . . 0.2972 . . . . . . . . . . . 0.3134 'X-RAY DIFFRACTION' 1.61 1.63 . . 140 2649 99.93 . . . . 0.2803 . . . . . . . . . . . 0.3189 'X-RAY DIFFRACTION' 1.64 1.66 . . 136 2595 99.93 . . . . 0.2654 . . . . . . . . . . . 0.3234 'X-RAY DIFFRACTION' 1.66 1.70 . . 141 2585 99.89 . . . . 0.2532 . . . . . . . . . . . 0.2867 'X-RAY DIFFRACTION' 1.70 1.73 . . 135 2598 99.85 . . . . 0.2443 . . . . . . . . . . . 0.2716 'X-RAY DIFFRACTION' 1.73 1.77 . . 138 2611 99.78 . . . . 0.2368 . . . . . . . . . . . 0.2657 'X-RAY DIFFRACTION' 1.77 1.81 . . 139 2588 99.93 . . . . 0.2149 . . . . . . . . . . . 0.2654 'X-RAY DIFFRACTION' 1.81 1.86 . . 140 2584 99.85 . . . . 0.1885 . . . . . . . . . . . 0.3041 'X-RAY DIFFRACTION' 1.86 1.91 . . 135 2623 99.96 . . . . 0.1803 . . . . . . . . . . . 0.2726 'X-RAY DIFFRACTION' 1.91 1.96 . . 139 2585 99.96 . . . . 0.1692 . . . . . . . . . . . 0.2162 'X-RAY DIFFRACTION' 1.96 2.03 . . 137 2630 99.96 . . . . 0.1522 . . . . . . . . . . . 0.2363 'X-RAY DIFFRACTION' 2.03 2.10 . . 139 2612 99.71 . . . . 0.1569 . . . . . . . . . . . 0.1673 'X-RAY DIFFRACTION' 2.10 2.18 . . 138 2568 99.89 . . . . 0.1458 . . . . . . . . . . . 0.2252 'X-RAY DIFFRACTION' 2.18 2.28 . . 137 2588 99.96 . . . . 0.1522 . . . . . . . . . . . 0.2102 'X-RAY DIFFRACTION' 2.28 2.40 . . 139 2609 99.93 . . . . 0.1472 . . . . . . . . . . . 0.2036 'X-RAY DIFFRACTION' 2.40 2.55 . . 136 2601 100.00 . . . . 0.1504 . . . . . . . . . . . 0.2359 'X-RAY DIFFRACTION' 2.55 2.75 . . 133 2616 100.00 . . . . 0.1485 . . . . . . . . . . . 0.2455 'X-RAY DIFFRACTION' 2.75 3.02 . . 142 2603 99.93 . . . . 0.1526 . . . . . . . . . . . 0.1966 'X-RAY DIFFRACTION' 3.03 3.46 . . 139 2608 100.00 . . . . 0.1438 . . . . . . . . . . . 0.2075 'X-RAY DIFFRACTION' 3.46 4.36 . . 134 2585 99.96 . . . . 0.1402 . . . . . . . . . . . 0.1759 'X-RAY DIFFRACTION' 4.36 42.19 . . 138 2613 99.96 . . . . 0.1783 . . . . . . . . . . . 0.2183 # _struct.entry_id 8RND _struct.title 'Cathepsin S in complex with NNPI-C10 inhibitor' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8RND _struct_keywords.text 'Protease, Inhibitor, Complex, Cathepsin, ONCOPROTEIN' _struct_keywords.pdbx_keywords ONCOPROTEIN # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 3 ? G N N 5 ? H N N 6 ? I N N 7 ? J N N 3 ? K N N 8 ? L N N 8 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP CATS_HUMAN P25774 ? 1 ;SNPNRILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTA FQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYY EPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI ; 109 2 PDB 8RND 8RND ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8RND A 1 ? 223 ? P25774 109 ? 331 ? 109 331 2 2 8RND B 1 ? 11 ? 8RND 1 ? 11 ? 1 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3390 ? 1 MORE 13 ? 1 'SSA (A^2)' 10200 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 30 ? GLY A 49 ? ALA A 138 GLY A 157 1 ? 20 HELX_P HELX_P2 AA2 SER A 55 ? SER A 63 ? SER A 163 SER A 171 1 ? 9 HELX_P HELX_P3 AA3 THR A 64 ? GLY A 68 ? THR A 172 GLY A 176 5 ? 5 HELX_P HELX_P4 AA4 LYS A 70 ? GLY A 74 ? LYS A 178 GLY A 182 5 ? 5 HELX_P HELX_P5 AA5 PHE A 76 ? LYS A 88 ? PHE A 184 LYS A 196 1 ? 13 HELX_P HELX_P6 AA6 ASP A 108 ? LYS A 110 ? ASP A 216 LYS A 218 5 ? 3 HELX_P HELX_P7 AA7 ARG A 126 ? LYS A 137 ? ARG A 234 LYS A 245 1 ? 12 HELX_P HELX_P8 AA8 HIS A 148 ? LEU A 153 ? HIS A 256 LEU A 261 1 ? 6 HELX_P HELX_P9 AA9 ASN A 210 ? ILE A 214 ? ASN A 318 ILE A 322 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 72 SG ? ? A CYS 136 A CYS 180 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf2 disulf ? ? A CYS 62 SG ? ? ? 1_555 A CYS 105 SG ? ? A CYS 170 A CYS 213 1_555 ? ? ? ? ? ? ? 2.046 ? ? disulf3 disulf ? ? A CYS 164 SG ? ? ? 1_555 A CYS 212 SG ? ? A CYS 272 A CYS 320 1_555 ? ? ? ? ? ? ? 2.031 ? ? covale1 covale both ? B ACE 1 C ? ? ? 1_555 B A1H5W 2 N ? ? B ACE 1 B A1H5W 2 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale2 covale both ? B A1H5W 2 C ? ? ? 1_555 B LYS 3 N ? ? B A1H5W 2 B LYS 3 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? B MET 6 C ? ? ? 1_555 B YWF 7 N ? ? B MET 6 B YWF 7 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale4 covale both ? B YWF 7 C ? ? ? 1_555 B VAL 8 N ? ? B YWF 7 B VAL 8 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale5 covale both ? B TRP 10 C ? ? ? 1_555 B NH2 11 N ? ? B TRP 10 B NH2 11 1_555 ? ? ? ? ? ? ? 1.304 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 5 ? AA3 ? 2 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 11 ? ASP A 12 ? VAL A 119 ASP A 120 AA1 2 HIS A 170 ? LEU A 180 ? HIS A 278 LEU A 288 AA1 3 VAL A 140 ? VAL A 144 ? VAL A 248 VAL A 252 AA2 1 VAL A 11 ? ASP A 12 ? VAL A 119 ASP A 120 AA2 2 HIS A 170 ? LEU A 180 ? HIS A 278 LEU A 288 AA2 3 LYS A 183 ? LYS A 189 ? LYS A 291 LYS A 297 AA2 4 TYR A 201 ? ALA A 205 ? TYR A 309 ALA A 313 AA2 5 VAL A 158 ? TYR A 159 ? VAL A 266 TYR A 267 AA3 1 ILE A 90 ? ASP A 91 ? ILE A 198 ASP A 199 AA3 2 ARG A 112 ? ALA A 114 ? ARG A 220 ALA A 222 AA4 1 LYS A 118 ? GLU A 121 ? LYS A 226 GLU A 229 AA4 2 SER A 219 ? GLU A 222 ? SER A 327 GLU A 330 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 11 ? N VAL A 119 O TYR A 177 ? O TYR A 285 AA1 2 3 O VAL A 174 ? O VAL A 282 N VAL A 140 ? N VAL A 248 AA2 1 2 N VAL A 11 ? N VAL A 119 O TYR A 177 ? O TYR A 285 AA2 2 3 N LEU A 173 ? N LEU A 281 O LYS A 189 ? O LYS A 297 AA2 3 4 N TRP A 186 ? N TRP A 294 O MET A 204 ? O MET A 312 AA2 4 5 O ARG A 203 ? O ARG A 311 N TYR A 159 ? N TYR A 267 AA3 1 2 N ILE A 90 ? N ILE A 198 O ALA A 113 ? O ALA A 221 AA4 1 2 N LYS A 118 ? N LYS A 226 O GLU A 222 ? O GLU A 330 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 505 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 594 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 135 ? ? -88.60 49.07 2 1 THR A 172 ? ? -111.28 -123.35 3 1 VAL B 8 ? ? -70.75 -82.65 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 559 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id K _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x+1/2,y+1/2,-z 4 -x,-y,z # _pdbx_entry_details.entry_id 8RND _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details 'Covalently-bound inhibitor for Cathepsin S' _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 109 ? A SER 1 2 1 Y 1 A ASN 110 ? A ASN 2 3 1 Y 1 A PRO 111 ? A PRO 3 4 1 Y 1 A ASN 112 ? A ASN 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1H5W N N N N 1 A1H5W CA C N S 2 A1H5W CB C N N 3 A1H5W NG N N N 4 A1H5W ND N N N 5 A1H5W NE N N N 6 A1H5W C C N N 7 A1H5W O O N N 8 A1H5W OXT O N N 9 A1H5W H H N N 10 A1H5W H2 H N N 11 A1H5W HA H N N 12 A1H5W HB2 H N N 13 A1H5W HB3 H N N 14 A1H5W H4 H N N 15 A1H5W HXT H N N 16 ACE C C N N 17 ACE O O N N 18 ACE CH3 C N N 19 ACE H H N N 20 ACE H1 H N N 21 ACE H2 H N N 22 ACE H3 H N N 23 ALA N N N N 24 ALA CA C N S 25 ALA C C N N 26 ALA O O N N 27 ALA CB C N N 28 ALA OXT O N N 29 ALA H H N N 30 ALA H2 H N N 31 ALA HA H N N 32 ALA HB1 H N N 33 ALA HB2 H N N 34 ALA HB3 H N N 35 ALA HXT H N N 36 ARG N N N N 37 ARG CA C N S 38 ARG C C N N 39 ARG O O N N 40 ARG CB C N N 41 ARG CG C N N 42 ARG CD C N N 43 ARG NE N N N 44 ARG CZ C N N 45 ARG NH1 N N N 46 ARG NH2 N N N 47 ARG OXT O N N 48 ARG H H N N 49 ARG H2 H N N 50 ARG HA H N N 51 ARG HB2 H N N 52 ARG HB3 H N N 53 ARG HG2 H N N 54 ARG HG3 H N N 55 ARG HD2 H N N 56 ARG HD3 H N N 57 ARG HE H N N 58 ARG HH11 H N N 59 ARG HH12 H N N 60 ARG HH21 H N N 61 ARG HH22 H N N 62 ARG HXT H N N 63 ASN N N N N 64 ASN CA C N S 65 ASN C C N N 66 ASN O O N N 67 ASN CB C N N 68 ASN CG C N N 69 ASN OD1 O N N 70 ASN ND2 N N N 71 ASN OXT O N N 72 ASN H H N N 73 ASN H2 H N N 74 ASN HA H N N 75 ASN HB2 H N N 76 ASN HB3 H N N 77 ASN HD21 H N N 78 ASN HD22 H N N 79 ASN HXT H N N 80 ASP N N N N 81 ASP CA C N S 82 ASP C C N N 83 ASP O O N N 84 ASP CB C N N 85 ASP CG C N N 86 ASP OD1 O N N 87 ASP OD2 O N N 88 ASP OXT O N N 89 ASP H H N N 90 ASP H2 H N N 91 ASP HA H N N 92 ASP HB2 H N N 93 ASP HB3 H N N 94 ASP HD2 H N N 95 ASP HXT H N N 96 CYS N N N N 97 CYS CA C N R 98 CYS C C N N 99 CYS O O N N 100 CYS CB C N N 101 CYS SG S N N 102 CYS OXT O N N 103 CYS H H N N 104 CYS H2 H N N 105 CYS HA H N N 106 CYS HB2 H N N 107 CYS HB3 H N N 108 CYS HG H N N 109 CYS HXT H N N 110 EDO C1 C N N 111 EDO O1 O N N 112 EDO C2 C N N 113 EDO O2 O N N 114 EDO H11 H N N 115 EDO H12 H N N 116 EDO HO1 H N N 117 EDO H21 H N N 118 EDO H22 H N N 119 EDO HO2 H N N 120 GLN N N N N 121 GLN CA C N S 122 GLN C C N N 123 GLN O O N N 124 GLN CB C N N 125 GLN CG C N N 126 GLN CD C N N 127 GLN OE1 O N N 128 GLN NE2 N N N 129 GLN OXT O N N 130 GLN H H N N 131 GLN H2 H N N 132 GLN HA H N N 133 GLN HB2 H N N 134 GLN HB3 H N N 135 GLN HG2 H N N 136 GLN HG3 H N N 137 GLN HE21 H N N 138 GLN HE22 H N N 139 GLN HXT H N N 140 GLU N N N N 141 GLU CA C N S 142 GLU C C N N 143 GLU O O N N 144 GLU CB C N N 145 GLU CG C N N 146 GLU CD C N N 147 GLU OE1 O N N 148 GLU OE2 O N N 149 GLU OXT O N N 150 GLU H H N N 151 GLU H2 H N N 152 GLU HA H N N 153 GLU HB2 H N N 154 GLU HB3 H N N 155 GLU HG2 H N N 156 GLU HG3 H N N 157 GLU HE2 H N N 158 GLU HXT H N N 159 GLY N N N N 160 GLY CA C N N 161 GLY C C N N 162 GLY O O N N 163 GLY OXT O N N 164 GLY H H N N 165 GLY H2 H N N 166 GLY HA2 H N N 167 GLY HA3 H N N 168 GLY HXT H N N 169 GOL C1 C N N 170 GOL O1 O N N 171 GOL C2 C N N 172 GOL O2 O N N 173 GOL C3 C N N 174 GOL O3 O N N 175 GOL H11 H N N 176 GOL H12 H N N 177 GOL HO1 H N N 178 GOL H2 H N N 179 GOL HO2 H N N 180 GOL H31 H N N 181 GOL H32 H N N 182 GOL HO3 H N N 183 HIS N N N N 184 HIS CA C N S 185 HIS C C N N 186 HIS O O N N 187 HIS CB C N N 188 HIS CG C Y N 189 HIS ND1 N Y N 190 HIS CD2 C Y N 191 HIS CE1 C Y N 192 HIS NE2 N Y N 193 HIS OXT O N N 194 HIS H H N N 195 HIS H2 H N N 196 HIS HA H N N 197 HIS HB2 H N N 198 HIS HB3 H N N 199 HIS HD1 H N N 200 HIS HD2 H N N 201 HIS HE1 H N N 202 HIS HE2 H N N 203 HIS HXT H N N 204 HOH O O N N 205 HOH H1 H N N 206 HOH H2 H N N 207 ILE N N N N 208 ILE CA C N S 209 ILE C C N N 210 ILE O O N N 211 ILE CB C N S 212 ILE CG1 C N N 213 ILE CG2 C N N 214 ILE CD1 C N N 215 ILE OXT O N N 216 ILE H H N N 217 ILE H2 H N N 218 ILE HA H N N 219 ILE HB H N N 220 ILE HG12 H N N 221 ILE HG13 H N N 222 ILE HG21 H N N 223 ILE HG22 H N N 224 ILE HG23 H N N 225 ILE HD11 H N N 226 ILE HD12 H N N 227 ILE HD13 H N N 228 ILE HXT H N N 229 LEU N N N N 230 LEU CA C N S 231 LEU C C N N 232 LEU O O N N 233 LEU CB C N N 234 LEU CG C N N 235 LEU CD1 C N N 236 LEU CD2 C N N 237 LEU OXT O N N 238 LEU H H N N 239 LEU H2 H N N 240 LEU HA H N N 241 LEU HB2 H N N 242 LEU HB3 H N N 243 LEU HG H N N 244 LEU HD11 H N N 245 LEU HD12 H N N 246 LEU HD13 H N N 247 LEU HD21 H N N 248 LEU HD22 H N N 249 LEU HD23 H N N 250 LEU HXT H N N 251 LYS N N N N 252 LYS CA C N S 253 LYS C C N N 254 LYS O O N N 255 LYS CB C N N 256 LYS CG C N N 257 LYS CD C N N 258 LYS CE C N N 259 LYS NZ N N N 260 LYS OXT O N N 261 LYS H H N N 262 LYS H2 H N N 263 LYS HA H N N 264 LYS HB2 H N N 265 LYS HB3 H N N 266 LYS HG2 H N N 267 LYS HG3 H N N 268 LYS HD2 H N N 269 LYS HD3 H N N 270 LYS HE2 H N N 271 LYS HE3 H N N 272 LYS HZ1 H N N 273 LYS HZ2 H N N 274 LYS HZ3 H N N 275 LYS HXT H N N 276 MET N N N N 277 MET CA C N S 278 MET C C N N 279 MET O O N N 280 MET CB C N N 281 MET CG C N N 282 MET SD S N N 283 MET CE C N N 284 MET OXT O N N 285 MET H H N N 286 MET H2 H N N 287 MET HA H N N 288 MET HB2 H N N 289 MET HB3 H N N 290 MET HG2 H N N 291 MET HG3 H N N 292 MET HE1 H N N 293 MET HE2 H N N 294 MET HE3 H N N 295 MET HXT H N N 296 NH2 N N N N 297 NH2 HN1 H N N 298 NH2 HN2 H N N 299 NO3 N N N N 300 NO3 O1 O N N 301 NO3 O2 O N N 302 NO3 O3 O N N 303 PEG C1 C N N 304 PEG O1 O N N 305 PEG C2 C N N 306 PEG O2 O N N 307 PEG C3 C N N 308 PEG C4 C N N 309 PEG O4 O N N 310 PEG H11 H N N 311 PEG H12 H N N 312 PEG HO1 H N N 313 PEG H21 H N N 314 PEG H22 H N N 315 PEG H31 H N N 316 PEG H32 H N N 317 PEG H41 H N N 318 PEG H42 H N N 319 PEG HO4 H N N 320 PGE C1 C N N 321 PGE O1 O N N 322 PGE C2 C N N 323 PGE O2 O N N 324 PGE C3 C N N 325 PGE C4 C N N 326 PGE O4 O N N 327 PGE C6 C N N 328 PGE C5 C N N 329 PGE O3 O N N 330 PGE H1 H N N 331 PGE H12 H N N 332 PGE HO1 H N N 333 PGE H2 H N N 334 PGE H22 H N N 335 PGE H3 H N N 336 PGE H32 H N N 337 PGE H4 H N N 338 PGE H42 H N N 339 PGE HO4 H N N 340 PGE H6 H N N 341 PGE H62 H N N 342 PGE H5 H N N 343 PGE H52 H N N 344 PHE N N N N 345 PHE CA C N S 346 PHE C C N N 347 PHE O O N N 348 PHE CB C N N 349 PHE CG C Y N 350 PHE CD1 C Y N 351 PHE CD2 C Y N 352 PHE CE1 C Y N 353 PHE CE2 C Y N 354 PHE CZ C Y N 355 PHE OXT O N N 356 PHE H H N N 357 PHE H2 H N N 358 PHE HA H N N 359 PHE HB2 H N N 360 PHE HB3 H N N 361 PHE HD1 H N N 362 PHE HD2 H N N 363 PHE HE1 H N N 364 PHE HE2 H N N 365 PHE HZ H N N 366 PHE HXT H N N 367 PRO N N N N 368 PRO CA C N S 369 PRO C C N N 370 PRO O O N N 371 PRO CB C N N 372 PRO CG C N N 373 PRO CD C N N 374 PRO OXT O N N 375 PRO H H N N 376 PRO HA H N N 377 PRO HB2 H N N 378 PRO HB3 H N N 379 PRO HG2 H N N 380 PRO HG3 H N N 381 PRO HD2 H N N 382 PRO HD3 H N N 383 PRO HXT H N N 384 SER N N N N 385 SER CA C N S 386 SER C C N N 387 SER O O N N 388 SER CB C N N 389 SER OG O N N 390 SER OXT O N N 391 SER H H N N 392 SER H2 H N N 393 SER HA H N N 394 SER HB2 H N N 395 SER HB3 H N N 396 SER HG H N N 397 SER HXT H N N 398 THR N N N N 399 THR CA C N S 400 THR C C N N 401 THR O O N N 402 THR CB C N R 403 THR OG1 O N N 404 THR CG2 C N N 405 THR OXT O N N 406 THR H H N N 407 THR H2 H N N 408 THR HA H N N 409 THR HB H N N 410 THR HG1 H N N 411 THR HG21 H N N 412 THR HG22 H N N 413 THR HG23 H N N 414 THR HXT H N N 415 TRP N N N N 416 TRP CA C N S 417 TRP C C N N 418 TRP O O N N 419 TRP CB C N N 420 TRP CG C Y N 421 TRP CD1 C Y N 422 TRP CD2 C Y N 423 TRP NE1 N Y N 424 TRP CE2 C Y N 425 TRP CE3 C Y N 426 TRP CZ2 C Y N 427 TRP CZ3 C Y N 428 TRP CH2 C Y N 429 TRP OXT O N N 430 TRP H H N N 431 TRP H2 H N N 432 TRP HA H N N 433 TRP HB2 H N N 434 TRP HB3 H N N 435 TRP HD1 H N N 436 TRP HE1 H N N 437 TRP HE3 H N N 438 TRP HZ2 H N N 439 TRP HZ3 H N N 440 TRP HH2 H N N 441 TRP HXT H N N 442 TYR N N N N 443 TYR CA C N S 444 TYR C C N N 445 TYR O O N N 446 TYR CB C N N 447 TYR CG C Y N 448 TYR CD1 C Y N 449 TYR CD2 C Y N 450 TYR CE1 C Y N 451 TYR CE2 C Y N 452 TYR CZ C Y N 453 TYR OH O N N 454 TYR OXT O N N 455 TYR H H N N 456 TYR H2 H N N 457 TYR HA H N N 458 TYR HB2 H N N 459 TYR HB3 H N N 460 TYR HD1 H N N 461 TYR HD2 H N N 462 TYR HE1 H N N 463 TYR HE2 H N N 464 TYR HH H N N 465 TYR HXT H N N 466 VAL N N N N 467 VAL CA C N S 468 VAL C C N N 469 VAL O O N N 470 VAL CB C N N 471 VAL CG1 C N N 472 VAL CG2 C N N 473 VAL OXT O N N 474 VAL H H N N 475 VAL H2 H N N 476 VAL HA H N N 477 VAL HB H N N 478 VAL HG11 H N N 479 VAL HG12 H N N 480 VAL HG13 H N N 481 VAL HG21 H N N 482 VAL HG22 H N N 483 VAL HG23 H N N 484 VAL HXT H N N 485 YWF N N N N 486 YWF CD C N N 487 YWF CB C N N 488 YWF CG C N N 489 YWF C C N N 490 YWF O O N N 491 YWF OXT O N N 492 YWF H H N N 493 YWF H2 H N N 494 YWF HA2 H N N 495 YWF HA1 H N N 496 YWF HB2 H N N 497 YWF HG2 H N N 498 YWF HXT H N N 499 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H5W N CA sing N N 1 A1H5W CA CB sing N N 2 A1H5W CA C sing N N 3 A1H5W CB NG sing N N 4 A1H5W C O doub N N 5 A1H5W ND NG doub N N 6 A1H5W ND NE doub N N 7 A1H5W C OXT sing N N 8 A1H5W N H sing N N 9 A1H5W N H2 sing N N 10 A1H5W CA HA sing N N 11 A1H5W CB HB2 sing N N 12 A1H5W CB HB3 sing N N 13 A1H5W NE H4 sing N N 14 A1H5W OXT HXT sing N N 15 ACE C O doub N N 16 ACE C CH3 sing N N 17 ACE C H sing N N 18 ACE CH3 H1 sing N N 19 ACE CH3 H2 sing N N 20 ACE CH3 H3 sing N N 21 ALA N CA sing N N 22 ALA N H sing N N 23 ALA N H2 sing N N 24 ALA CA C sing N N 25 ALA CA CB sing N N 26 ALA CA HA sing N N 27 ALA C O doub N N 28 ALA C OXT sing N N 29 ALA CB HB1 sing N N 30 ALA CB HB2 sing N N 31 ALA CB HB3 sing N N 32 ALA OXT HXT sing N N 33 ARG N CA sing N N 34 ARG N H sing N N 35 ARG N H2 sing N N 36 ARG CA C sing N N 37 ARG CA CB sing N N 38 ARG CA HA sing N N 39 ARG C O doub N N 40 ARG C OXT sing N N 41 ARG CB CG sing N N 42 ARG CB HB2 sing N N 43 ARG CB HB3 sing N N 44 ARG CG CD sing N N 45 ARG CG HG2 sing N N 46 ARG CG HG3 sing N N 47 ARG CD NE sing N N 48 ARG CD HD2 sing N N 49 ARG CD HD3 sing N N 50 ARG NE CZ sing N N 51 ARG NE HE sing N N 52 ARG CZ NH1 sing N N 53 ARG CZ NH2 doub N N 54 ARG NH1 HH11 sing N N 55 ARG NH1 HH12 sing N N 56 ARG NH2 HH21 sing N N 57 ARG NH2 HH22 sing N N 58 ARG OXT HXT sing N N 59 ASN N CA sing N N 60 ASN N H sing N N 61 ASN N H2 sing N N 62 ASN CA C sing N N 63 ASN CA CB sing N N 64 ASN CA HA sing N N 65 ASN C O doub N N 66 ASN C OXT sing N N 67 ASN CB CG sing N N 68 ASN CB HB2 sing N N 69 ASN CB HB3 sing N N 70 ASN CG OD1 doub N N 71 ASN CG ND2 sing N N 72 ASN ND2 HD21 sing N N 73 ASN ND2 HD22 sing N N 74 ASN OXT HXT sing N N 75 ASP N CA sing N N 76 ASP N H sing N N 77 ASP N H2 sing N N 78 ASP CA C sing N N 79 ASP CA CB sing N N 80 ASP CA HA sing N N 81 ASP C O doub N N 82 ASP C OXT sing N N 83 ASP CB CG sing N N 84 ASP CB HB2 sing N N 85 ASP CB HB3 sing N N 86 ASP CG OD1 doub N N 87 ASP CG OD2 sing N N 88 ASP OD2 HD2 sing N N 89 ASP OXT HXT sing N N 90 CYS N CA sing N N 91 CYS N H sing N N 92 CYS N H2 sing N N 93 CYS CA C sing N N 94 CYS CA CB sing N N 95 CYS CA HA sing N N 96 CYS C O doub N N 97 CYS C OXT sing N N 98 CYS CB SG sing N N 99 CYS CB HB2 sing N N 100 CYS CB HB3 sing N N 101 CYS SG HG sing N N 102 CYS OXT HXT sing N N 103 EDO C1 O1 sing N N 104 EDO C1 C2 sing N N 105 EDO C1 H11 sing N N 106 EDO C1 H12 sing N N 107 EDO O1 HO1 sing N N 108 EDO C2 O2 sing N N 109 EDO C2 H21 sing N N 110 EDO C2 H22 sing N N 111 EDO O2 HO2 sing N N 112 GLN N CA sing N N 113 GLN N H sing N N 114 GLN N H2 sing N N 115 GLN CA C sing N N 116 GLN CA CB sing N N 117 GLN CA HA sing N N 118 GLN C O doub N N 119 GLN C OXT sing N N 120 GLN CB CG sing N N 121 GLN CB HB2 sing N N 122 GLN CB HB3 sing N N 123 GLN CG CD sing N N 124 GLN CG HG2 sing N N 125 GLN CG HG3 sing N N 126 GLN CD OE1 doub N N 127 GLN CD NE2 sing N N 128 GLN NE2 HE21 sing N N 129 GLN NE2 HE22 sing N N 130 GLN OXT HXT sing N N 131 GLU N CA sing N N 132 GLU N H sing N N 133 GLU N H2 sing N N 134 GLU CA C sing N N 135 GLU CA CB sing N N 136 GLU CA HA sing N N 137 GLU C O doub N N 138 GLU C OXT sing N N 139 GLU CB CG sing N N 140 GLU CB HB2 sing N N 141 GLU CB HB3 sing N N 142 GLU CG CD sing N N 143 GLU CG HG2 sing N N 144 GLU CG HG3 sing N N 145 GLU CD OE1 doub N N 146 GLU CD OE2 sing N N 147 GLU OE2 HE2 sing N N 148 GLU OXT HXT sing N N 149 GLY N CA sing N N 150 GLY N H sing N N 151 GLY N H2 sing N N 152 GLY CA C sing N N 153 GLY CA HA2 sing N N 154 GLY CA HA3 sing N N 155 GLY C O doub N N 156 GLY C OXT sing N N 157 GLY OXT HXT sing N N 158 GOL C1 O1 sing N N 159 GOL C1 C2 sing N N 160 GOL C1 H11 sing N N 161 GOL C1 H12 sing N N 162 GOL O1 HO1 sing N N 163 GOL C2 O2 sing N N 164 GOL C2 C3 sing N N 165 GOL C2 H2 sing N N 166 GOL O2 HO2 sing N N 167 GOL C3 O3 sing N N 168 GOL C3 H31 sing N N 169 GOL C3 H32 sing N N 170 GOL O3 HO3 sing N N 171 HIS N CA sing N N 172 HIS N H sing N N 173 HIS N H2 sing N N 174 HIS CA C sing N N 175 HIS CA CB sing N N 176 HIS CA HA sing N N 177 HIS C O doub N N 178 HIS C OXT sing N N 179 HIS CB CG sing N N 180 HIS CB HB2 sing N N 181 HIS CB HB3 sing N N 182 HIS CG ND1 sing Y N 183 HIS CG CD2 doub Y N 184 HIS ND1 CE1 doub Y N 185 HIS ND1 HD1 sing N N 186 HIS CD2 NE2 sing Y N 187 HIS CD2 HD2 sing N N 188 HIS CE1 NE2 sing Y N 189 HIS CE1 HE1 sing N N 190 HIS NE2 HE2 sing N N 191 HIS OXT HXT sing N N 192 HOH O H1 sing N N 193 HOH O H2 sing N N 194 ILE N CA sing N N 195 ILE N H sing N N 196 ILE N H2 sing N N 197 ILE CA C sing N N 198 ILE CA CB sing N N 199 ILE CA HA sing N N 200 ILE C O doub N N 201 ILE C OXT sing N N 202 ILE CB CG1 sing N N 203 ILE CB CG2 sing N N 204 ILE CB HB sing N N 205 ILE CG1 CD1 sing N N 206 ILE CG1 HG12 sing N N 207 ILE CG1 HG13 sing N N 208 ILE CG2 HG21 sing N N 209 ILE CG2 HG22 sing N N 210 ILE CG2 HG23 sing N N 211 ILE CD1 HD11 sing N N 212 ILE CD1 HD12 sing N N 213 ILE CD1 HD13 sing N N 214 ILE OXT HXT sing N N 215 LEU N CA sing N N 216 LEU N H sing N N 217 LEU N H2 sing N N 218 LEU CA C sing N N 219 LEU CA CB sing N N 220 LEU CA HA sing N N 221 LEU C O doub N N 222 LEU C OXT sing N N 223 LEU CB CG sing N N 224 LEU CB HB2 sing N N 225 LEU CB HB3 sing N N 226 LEU CG CD1 sing N N 227 LEU CG CD2 sing N N 228 LEU CG HG sing N N 229 LEU CD1 HD11 sing N N 230 LEU CD1 HD12 sing N N 231 LEU CD1 HD13 sing N N 232 LEU CD2 HD21 sing N N 233 LEU CD2 HD22 sing N N 234 LEU CD2 HD23 sing N N 235 LEU OXT HXT sing N N 236 LYS N CA sing N N 237 LYS N H sing N N 238 LYS N H2 sing N N 239 LYS CA C sing N N 240 LYS CA CB sing N N 241 LYS CA HA sing N N 242 LYS C O doub N N 243 LYS C OXT sing N N 244 LYS CB CG sing N N 245 LYS CB HB2 sing N N 246 LYS CB HB3 sing N N 247 LYS CG CD sing N N 248 LYS CG HG2 sing N N 249 LYS CG HG3 sing N N 250 LYS CD CE sing N N 251 LYS CD HD2 sing N N 252 LYS CD HD3 sing N N 253 LYS CE NZ sing N N 254 LYS CE HE2 sing N N 255 LYS CE HE3 sing N N 256 LYS NZ HZ1 sing N N 257 LYS NZ HZ2 sing N N 258 LYS NZ HZ3 sing N N 259 LYS OXT HXT sing N N 260 MET N CA sing N N 261 MET N H sing N N 262 MET N H2 sing N N 263 MET CA C sing N N 264 MET CA CB sing N N 265 MET CA HA sing N N 266 MET C O doub N N 267 MET C OXT sing N N 268 MET CB CG sing N N 269 MET CB HB2 sing N N 270 MET CB HB3 sing N N 271 MET CG SD sing N N 272 MET CG HG2 sing N N 273 MET CG HG3 sing N N 274 MET SD CE sing N N 275 MET CE HE1 sing N N 276 MET CE HE2 sing N N 277 MET CE HE3 sing N N 278 MET OXT HXT sing N N 279 NH2 N HN1 sing N N 280 NH2 N HN2 sing N N 281 NO3 N O1 doub N N 282 NO3 N O2 sing N N 283 NO3 N O3 sing N N 284 PEG C1 O1 sing N N 285 PEG C1 C2 sing N N 286 PEG C1 H11 sing N N 287 PEG C1 H12 sing N N 288 PEG O1 HO1 sing N N 289 PEG C2 O2 sing N N 290 PEG C2 H21 sing N N 291 PEG C2 H22 sing N N 292 PEG O2 C3 sing N N 293 PEG C3 C4 sing N N 294 PEG C3 H31 sing N N 295 PEG C3 H32 sing N N 296 PEG C4 O4 sing N N 297 PEG C4 H41 sing N N 298 PEG C4 H42 sing N N 299 PEG O4 HO4 sing N N 300 PGE C1 O1 sing N N 301 PGE C1 C2 sing N N 302 PGE C1 H1 sing N N 303 PGE C1 H12 sing N N 304 PGE O1 HO1 sing N N 305 PGE C2 O2 sing N N 306 PGE C2 H2 sing N N 307 PGE C2 H22 sing N N 308 PGE O2 C3 sing N N 309 PGE C3 C4 sing N N 310 PGE C3 H3 sing N N 311 PGE C3 H32 sing N N 312 PGE C4 O3 sing N N 313 PGE C4 H4 sing N N 314 PGE C4 H42 sing N N 315 PGE O4 C6 sing N N 316 PGE O4 HO4 sing N N 317 PGE C6 C5 sing N N 318 PGE C6 H6 sing N N 319 PGE C6 H62 sing N N 320 PGE C5 O3 sing N N 321 PGE C5 H5 sing N N 322 PGE C5 H52 sing N N 323 PHE N CA sing N N 324 PHE N H sing N N 325 PHE N H2 sing N N 326 PHE CA C sing N N 327 PHE CA CB sing N N 328 PHE CA HA sing N N 329 PHE C O doub N N 330 PHE C OXT sing N N 331 PHE CB CG sing N N 332 PHE CB HB2 sing N N 333 PHE CB HB3 sing N N 334 PHE CG CD1 doub Y N 335 PHE CG CD2 sing Y N 336 PHE CD1 CE1 sing Y N 337 PHE CD1 HD1 sing N N 338 PHE CD2 CE2 doub Y N 339 PHE CD2 HD2 sing N N 340 PHE CE1 CZ doub Y N 341 PHE CE1 HE1 sing N N 342 PHE CE2 CZ sing Y N 343 PHE CE2 HE2 sing N N 344 PHE CZ HZ sing N N 345 PHE OXT HXT sing N N 346 PRO N CA sing N N 347 PRO N CD sing N N 348 PRO N H sing N N 349 PRO CA C sing N N 350 PRO CA CB sing N N 351 PRO CA HA sing N N 352 PRO C O doub N N 353 PRO C OXT sing N N 354 PRO CB CG sing N N 355 PRO CB HB2 sing N N 356 PRO CB HB3 sing N N 357 PRO CG CD sing N N 358 PRO CG HG2 sing N N 359 PRO CG HG3 sing N N 360 PRO CD HD2 sing N N 361 PRO CD HD3 sing N N 362 PRO OXT HXT sing N N 363 SER N CA sing N N 364 SER N H sing N N 365 SER N H2 sing N N 366 SER CA C sing N N 367 SER CA CB sing N N 368 SER CA HA sing N N 369 SER C O doub N N 370 SER C OXT sing N N 371 SER CB OG sing N N 372 SER CB HB2 sing N N 373 SER CB HB3 sing N N 374 SER OG HG sing N N 375 SER OXT HXT sing N N 376 THR N CA sing N N 377 THR N H sing N N 378 THR N H2 sing N N 379 THR CA C sing N N 380 THR CA CB sing N N 381 THR CA HA sing N N 382 THR C O doub N N 383 THR C OXT sing N N 384 THR CB OG1 sing N N 385 THR CB CG2 sing N N 386 THR CB HB sing N N 387 THR OG1 HG1 sing N N 388 THR CG2 HG21 sing N N 389 THR CG2 HG22 sing N N 390 THR CG2 HG23 sing N N 391 THR OXT HXT sing N N 392 TRP N CA sing N N 393 TRP N H sing N N 394 TRP N H2 sing N N 395 TRP CA C sing N N 396 TRP CA CB sing N N 397 TRP CA HA sing N N 398 TRP C O doub N N 399 TRP C OXT sing N N 400 TRP CB CG sing N N 401 TRP CB HB2 sing N N 402 TRP CB HB3 sing N N 403 TRP CG CD1 doub Y N 404 TRP CG CD2 sing Y N 405 TRP CD1 NE1 sing Y N 406 TRP CD1 HD1 sing N N 407 TRP CD2 CE2 doub Y N 408 TRP CD2 CE3 sing Y N 409 TRP NE1 CE2 sing Y N 410 TRP NE1 HE1 sing N N 411 TRP CE2 CZ2 sing Y N 412 TRP CE3 CZ3 doub Y N 413 TRP CE3 HE3 sing N N 414 TRP CZ2 CH2 doub Y N 415 TRP CZ2 HZ2 sing N N 416 TRP CZ3 CH2 sing Y N 417 TRP CZ3 HZ3 sing N N 418 TRP CH2 HH2 sing N N 419 TRP OXT HXT sing N N 420 TYR N CA sing N N 421 TYR N H sing N N 422 TYR N H2 sing N N 423 TYR CA C sing N N 424 TYR CA CB sing N N 425 TYR CA HA sing N N 426 TYR C O doub N N 427 TYR C OXT sing N N 428 TYR CB CG sing N N 429 TYR CB HB2 sing N N 430 TYR CB HB3 sing N N 431 TYR CG CD1 doub Y N 432 TYR CG CD2 sing Y N 433 TYR CD1 CE1 sing Y N 434 TYR CD1 HD1 sing N N 435 TYR CD2 CE2 doub Y N 436 TYR CD2 HD2 sing N N 437 TYR CE1 CZ doub Y N 438 TYR CE1 HE1 sing N N 439 TYR CE2 CZ sing Y N 440 TYR CE2 HE2 sing N N 441 TYR CZ OH sing N N 442 TYR OH HH sing N N 443 TYR OXT HXT sing N N 444 VAL N CA sing N N 445 VAL N H sing N N 446 VAL N H2 sing N N 447 VAL CA C sing N N 448 VAL CA CB sing N N 449 VAL CA HA sing N N 450 VAL C O doub N N 451 VAL C OXT sing N N 452 VAL CB CG1 sing N N 453 VAL CB CG2 sing N N 454 VAL CB HB sing N N 455 VAL CG1 HG11 sing N N 456 VAL CG1 HG12 sing N N 457 VAL CG1 HG13 sing N N 458 VAL CG2 HG21 sing N N 459 VAL CG2 HG22 sing N N 460 VAL CG2 HG23 sing N N 461 VAL OXT HXT sing N N 462 YWF CD N sing N N 463 YWF CD CB sing N N 464 YWF CB CG doub N E 465 YWF O C doub N N 466 YWF C OXT sing N N 467 YWF N H sing N N 468 YWF N H2 sing N N 469 YWF CD HA2 sing N N 470 YWF CD HA1 sing N N 471 YWF CB HB2 sing N N 472 YWF CG HG2 sing N N 473 YWF OXT HXT sing N N 474 YWF CG C sing N N 475 # _pdbx_audit_support.funding_organization 'Swiss Cancer League' _pdbx_audit_support.country Switzerland _pdbx_audit_support.grant_number KFS-5102-08-2020 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3ovx _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'P 21 21 2' _space_group.name_Hall 'P 2 2ab' _space_group.IT_number 18 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 8RND _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.022405 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007739 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026546 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? ? ? ? ? ? ? ? ? ? ? ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_