HEADER OXIDOREDUCTASE 10-JAN-24 8RNP TITLE UNSPECIFIC PEROXYGENASE FROM MARASMIUS WETTSTEINII (MWEUPO-1) IN TITLE 2 COMPLEX WITH R-LIMONENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNSPECIFIC PEROXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.11.2.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MARASMIUS WETTSTEINII; SOURCE 3 ORGANISM_TAXID: 2493799; SOURCE 4 EXPRESSION_SYSTEM: KOMAGATAELLA PHAFFII CBS 7435; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 981350 KEYWDS PEROXYGENASE, PEROXIDASE, COMPLEX, R-LIMONENE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.FERNANDEZ-GARCIA,J.SANZ-APARICIO REVDAT 2 30-OCT-24 8RNP 1 JRNL REVDAT 1 16-OCT-24 8RNP 0 JRNL AUTH I.SANCHEZ-MORENO,A.FERNANDEZ-GARCIA,I.MATELJAK, JRNL AUTH 2 P.GOMEZ DE SANTOS,M.HOFRICHTER,H.KELLNER,J.SANZ-APARICIO, JRNL AUTH 3 M.ALCALDE JRNL TITL STRUCTURAL INSIGHTS AND REACTION PROFILE OF A NEW UNSPECIFIC JRNL TITL 2 PEROXYGENASE FROM MARASMIUS WETTSTEINII PRODUCED IN A JRNL TITL 3 TANDEM-YEAST EXPRESSION SYSTEM. JRNL REF ACS CHEM.BIOL. V. 19 2240 2024 JRNL REFN ESSN 1554-8937 JRNL PMID 39367827 JRNL DOI 10.1021/ACSCHEMBIO.4C00504 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 37551 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1933 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2692 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3642 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 213 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.92000 REMARK 3 B22 (A**2) : 2.92000 REMARK 3 B33 (A**2) : -5.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4003 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3734 ; 0.004 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5479 ; 1.405 ; 1.843 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8615 ; 0.504 ; 1.776 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 498 ; 7.007 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 28 ; 8.363 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 608 ;11.656 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 609 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4760 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 900 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1938 ; 3.422 ; 4.737 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1938 ; 3.421 ; 4.737 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2424 ; 4.733 ; 8.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2425 ; 4.732 ; 8.503 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2065 ; 3.745 ; 5.092 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2054 ; 3.639 ; 5.064 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3028 ; 5.482 ; 9.149 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4632 ; 7.619 ;46.340 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4603 ; 7.621 ;46.370 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8RNP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1292130856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39559 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 47.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.62500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 4000, 100MM SODIUM ACETATE PH REMARK 280 4.6, 200MM AMMONIUM SULFATE. SOAKING: 20 MM R-LIMONENE, 16 HOURS, REMARK 280 CRYOPROTECTED WITH 20% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.04250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.50500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.50500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 139.56375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.50500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.50500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.52125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.50500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.50500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 139.56375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.50500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.50500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.52125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 93.04250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 122 C1 NAG A 308 1.63 REMARK 500 NH1 ARG A 34 O1 SO4 A 310 1.74 REMARK 500 CG ASN A 143 C1 NAG A 302 1.89 REMARK 500 OD1 ASN A 143 C1 NAG A 302 1.90 REMARK 500 ND2 ASN A 143 O5 NAG A 302 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 71 15.77 -155.52 REMARK 500 THR A 83 -82.64 -85.18 REMARK 500 SER A 91 -0.91 -140.48 REMARK 500 ASN A 122 64.39 -164.36 REMARK 500 ILE A 123 -61.17 67.29 REMARK 500 ASP B 71 21.12 -154.31 REMARK 500 THR B 83 -82.41 -86.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A -3 VAL A -2 143.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 154 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 308 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 17 SG REMARK 620 2 HEM A 301 NA 98.9 REMARK 620 3 HEM A 301 NB 93.4 86.6 REMARK 620 4 HEM A 301 NC 89.5 170.4 88.4 REMARK 620 5 HEM A 301 ND 93.9 91.5 172.6 92.5 REMARK 620 6 HOH A 494 O 171.2 85.4 79.2 85.7 93.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 309 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 85 OE2 REMARK 620 2 HIS A 86 O 85.5 REMARK 620 3 SER A 89 OG 175.1 91.7 REMARK 620 4 HEM A 301 O1A 103.3 86.2 80.5 REMARK 620 5 HOH A 460 O 88.4 173.9 94.4 94.7 REMARK 620 6 HOH A 482 O 89.1 89.0 86.9 166.3 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 17 SG REMARK 620 2 HEM B 301 NA 85.6 REMARK 620 3 HEM B 301 NB 81.5 88.4 REMARK 620 4 HEM B 301 NC 89.9 174.7 88.1 REMARK 620 5 HEM B 301 ND 95.7 90.5 177.1 92.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 307 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 85 OE2 REMARK 620 2 HIS B 86 O 89.0 REMARK 620 3 SER B 89 OG 172.2 96.2 REMARK 620 4 HEM B 301 O1D 101.9 92.5 83.6 REMARK 620 5 HOH B 457 O 84.8 84.9 90.0 172.8 REMARK 620 6 HOH B 463 O 87.6 176.4 87.3 87.2 95.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8RNJ RELATED DB: PDB REMARK 900 RELATED ID: 8RNK RELATED DB: PDB REMARK 900 RELATED ID: 8RNL RELATED DB: PDB REMARK 900 RELATED ID: 8RNM RELATED DB: PDB REMARK 900 RELATED ID: 8RNN RELATED DB: PDB REMARK 900 RELATED ID: 8RNO RELATED DB: PDB REMARK 900 RELATED ID: 8RNQ RELATED DB: PDB REMARK 900 RELATED ID: 8RNR RELATED DB: PDB DBREF 8RNP A -3 236 PDB 8RNP 8RNP -3 236 DBREF 8RNP B -3 236 PDB 8RNP 8RNP -3 236 SEQRES 1 A 240 ALA VAL ASP PHE SER ALA HIS PRO TRP LYS ALA PRO GLY SEQRES 2 A 240 PRO ASN ASP SER ARG GLY PRO CYS PRO GLY LEU ASN THR SEQRES 3 A 240 LEU ALA ASN HIS GLY PHE LEU PRO ARG ASN GLY ARG ASN SEQRES 4 A 240 ILE SER VAL PRO MET ILE VAL LYS ALA GLY PHE GLU GLY SEQRES 5 A 240 TYR ASN VAL GLN SER ASP ILE LEU ILE LEU ALA GLY LYS SEQRES 6 A 240 VAL GLY MET LEU THR SER ARG GLU ALA ASP THR ILE SER SEQRES 7 A 240 LEU GLU ASP LEU LYS LEU HIS GLY THR ILE GLU HIS ASP SEQRES 8 A 240 ALA SER LEU SER ARG GLU ASP VAL ALA ILE GLY ASP ASN SEQRES 9 A 240 LEU HIS PHE ASN GLU ALA ILE PHE THR THR LEU ALA ASN SEQRES 10 A 240 SER ASN PRO GLY ALA ASP VAL TYR ASN ILE SER SER ALA SEQRES 11 A 240 ALA GLN VAL GLN HIS ASP ARG LEU ALA ASP SER VAL ALA SEQRES 12 A 240 ARG ASN PRO ASN VAL THR ASN THR ASP LEU THR ALA THR SEQRES 13 A 240 ILE ARG SER SER GLU SER ALA PHE TYR LEU THR VAL MET SEQRES 14 A 240 SER ALA GLY ASP PRO LEU ARG GLY GLU ALA PRO LYS LYS SEQRES 15 A 240 PHE VAL ASN VAL PHE PHE GLN GLU GLU ARG MET PRO ILE SEQRES 16 A 240 LYS GLU GLY TRP LYS ARG SER THR THR PRO ILE ASN LEU SEQRES 17 A 240 PRO LEU LEU GLY PRO ILE ILE ASP ARG ILE THR GLU LEU SEQRES 18 A 240 SER ASP TRP LYS PRO THR GLY ASP ASN CYS GLY ALA ILE SEQRES 19 A 240 VAL LEU GLY PRO GLY LEU SEQRES 1 B 240 ALA VAL ASP PHE SER ALA HIS PRO TRP LYS ALA PRO GLY SEQRES 2 B 240 PRO ASN ASP SER ARG GLY PRO CYS PRO GLY LEU ASN THR SEQRES 3 B 240 LEU ALA ASN HIS GLY PHE LEU PRO ARG ASN GLY ARG ASN SEQRES 4 B 240 ILE SER VAL PRO MET ILE VAL LYS ALA GLY PHE GLU GLY SEQRES 5 B 240 TYR ASN VAL GLN SER ASP ILE LEU ILE LEU ALA GLY LYS SEQRES 6 B 240 VAL GLY MET LEU THR SER ARG GLU ALA ASP THR ILE SER SEQRES 7 B 240 LEU GLU ASP LEU LYS LEU HIS GLY THR ILE GLU HIS ASP SEQRES 8 B 240 ALA SER LEU SER ARG GLU ASP VAL ALA ILE GLY ASP ASN SEQRES 9 B 240 LEU HIS PHE ASN GLU ALA ILE PHE THR THR LEU ALA ASN SEQRES 10 B 240 SER ASN PRO GLY ALA ASP VAL TYR ASN ILE SER SER ALA SEQRES 11 B 240 ALA GLN VAL GLN HIS ASP ARG LEU ALA ASP SER VAL ALA SEQRES 12 B 240 ARG ASN PRO ASN VAL THR ASN THR ASP LEU THR ALA THR SEQRES 13 B 240 ILE ARG SER SER GLU SER ALA PHE TYR LEU THR VAL MET SEQRES 14 B 240 SER ALA GLY ASP PRO LEU ARG GLY GLU ALA PRO LYS LYS SEQRES 15 B 240 PHE VAL ASN VAL PHE PHE GLN GLU GLU ARG MET PRO ILE SEQRES 16 B 240 LYS GLU GLY TRP LYS ARG SER THR THR PRO ILE ASN LEU SEQRES 17 B 240 PRO LEU LEU GLY PRO ILE ILE ASP ARG ILE THR GLU LEU SEQRES 18 B 240 SER ASP TRP LYS PRO THR GLY ASP ASN CYS GLY ALA ILE SEQRES 19 B 240 VAL LEU GLY PRO GLY LEU HET HEM A 301 43 HET NAG A 302 14 HET GOL A 303 6 HET GOL A 304 6 HET PEG A 305 7 HET GOL A 306 6 HET 9IR A 307 10 HET NAG A 308 14 HET MG A 309 1 HET SO4 A 310 5 HET SO4 A 311 5 HET HEM B 301 43 HET NAG B 302 14 HET GOL B 303 6 HET PEG B 304 7 HET GOL B 305 6 HET NAG B 306 14 HET MG B 307 1 HET SO4 B 308 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 9IR (4R)-1-METHYL-4-(PROP-1-EN-2-YL)CYCLOHEX-1-ENE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN HEM HEME HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 9IR R-(+)-LIMONENE FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 NAG 4(C8 H15 N O6) FORMUL 5 GOL 5(C3 H8 O3) FORMUL 7 PEG 2(C4 H10 O3) FORMUL 9 9IR C10 H16 FORMUL 11 MG 2(MG 2+) FORMUL 12 SO4 3(O4 S 2-) FORMUL 22 HOH *216(H2 O) HELIX 1 AA1 ASP A -1 HIS A 3 5 5 HELIX 2 AA2 CYS A 17 HIS A 26 1 10 HELIX 3 AA3 SER A 37 ASN A 50 1 14 HELIX 4 AA4 GLN A 52 LEU A 65 1 14 HELIX 5 AA5 SER A 74 LEU A 80 5 7 HELIX 6 AA6 ASN A 104 ASN A 113 1 10 HELIX 7 AA7 ILE A 123 ASN A 141 1 19 HELIX 8 AA8 THR A 147 MET A 165 1 19 HELIX 9 AA9 ASP A 169 GLY A 173 5 5 HELIX 10 AB1 LYS A 177 GLU A 187 1 11 HELIX 11 AB2 ASN A 203 SER A 218 1 16 HELIX 12 AB3 ASP B -1 HIS B 3 5 5 HELIX 13 AB4 CYS B 17 HIS B 26 1 10 HELIX 14 AB5 SER B 37 ASN B 50 1 14 HELIX 15 AB6 GLN B 52 LEU B 65 1 14 HELIX 16 AB7 SER B 74 LEU B 80 5 7 HELIX 17 AB8 ASN B 104 ASN B 113 1 10 HELIX 18 AB9 ILE B 123 ASN B 141 1 19 HELIX 19 AC1 THR B 147 MET B 165 1 19 HELIX 20 AC2 ASP B 169 ARG B 172 5 4 HELIX 21 AC3 LYS B 177 GLU B 187 1 11 HELIX 22 AC4 ASN B 203 SER B 218 1 16 SHEET 1 AA1 2 VAL A 120 TYR A 121 0 SHEET 2 AA1 2 ALA A 175 PRO A 176 -1 O ALA A 175 N TYR A 121 SHEET 1 AA2 2 VAL B 120 ASN B 122 0 SHEET 2 AA2 2 GLU B 174 PRO B 176 -1 O ALA B 175 N TYR B 121 SSBOND 1 CYS A 227 CYS B 227 1555 1555 2.40 LINK ND2 ASN A 143 C1 NAG A 302 1555 1555 1.56 LINK ND2 ASN B 122 C1 NAG B 302 1555 1555 1.57 LINK ND2 ASN B 143 C1 NAG B 306 1555 1555 1.41 LINK SG CYS A 17 FE HEM A 301 1555 1555 2.29 LINK OE2 GLU A 85 MG MG A 309 1555 1555 2.02 LINK O HIS A 86 MG MG A 309 1555 1555 2.21 LINK OG SER A 89 MG MG A 309 1555 1555 2.10 LINK O1A HEM A 301 MG MG A 309 1555 1555 2.07 LINK FE HEM A 301 O HOH A 494 1555 1555 2.58 LINK MG MG A 309 O HOH A 460 1555 1555 2.14 LINK MG MG A 309 O HOH A 482 1555 1555 2.16 LINK SG CYS B 17 FE HEM B 301 1555 1555 2.44 LINK OE2 GLU B 85 MG MG B 307 1555 1555 2.01 LINK O HIS B 86 MG MG B 307 1555 1555 2.07 LINK OG SER B 89 MG MG B 307 1555 1555 2.13 LINK O1D HEM B 301 MG MG B 307 1555 1555 2.11 LINK MG MG B 307 O HOH B 457 1555 1555 2.18 LINK MG MG B 307 O HOH B 463 1555 1555 2.14 CRYST1 75.010 75.010 186.085 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013332 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013332 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005374 0.00000