HEADER OXIDOREDUCTASE 10-JAN-24 8RNQ TITLE UNSPECIFIC PEROXYGENASE FROM MARASMIUS WETTSTEINII (MWEUPO-1) IN TITLE 2 COMPLEX WITH DODECANE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNSPECIFIC PEROXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.11.2.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MARASMIUS WETTSTEINII; SOURCE 3 ORGANISM_TAXID: 2493799; SOURCE 4 EXPRESSION_SYSTEM: KOMAGATAELLA PHAFFII CBS 7435; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 981350 KEYWDS PEROXYGENASE, PEROXIDASE, COMPLEX, DODECANE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.FERNANDEZ-GARCIA,J.SANZ-APARICIO REVDAT 1 16-OCT-24 8RNQ 0 JRNL AUTH I.SANCHEZ-MORENO,A.FERNANDEZ-GARCIA,I.MATELJAK, JRNL AUTH 2 P.GOMEZ DE SANTOS,M.HOFRICHTER,H.KELLNER,J.SANZ-APARICIO, JRNL AUTH 3 M.ALCALDE JRNL TITL STRUCTURAL INSIGHTS AND REACTION PROFILE OF A NEW UNSPECIFIC JRNL TITL 2 PEROXYGENASE FROM MARASMIUS WETTSTEINII PRODUCED IN A JRNL TITL 3 TANDEM-YEAST EXPRESSION SYSTEM. JRNL REF ACS CHEM.BIOL. 2024 JRNL REFN ESSN 1554-8937 JRNL PMID 39367827 JRNL DOI 10.1021/ACSCHEMBIO.4C00504 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0403 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 49170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2664 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3571 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3642 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 261 REMARK 3 SOLVENT ATOMS : 394 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.30000 REMARK 3 B22 (A**2) : 1.30000 REMARK 3 B33 (A**2) : -2.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.942 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4042 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3794 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5522 ; 1.491 ; 1.697 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8772 ; 0.521 ; 1.589 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 496 ; 6.564 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 27 ; 8.459 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 605 ;12.678 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4708 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 881 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1936 ; 3.162 ; 3.697 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1936 ; 3.158 ; 3.697 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2421 ; 4.186 ; 6.641 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2422 ; 4.185 ; 6.644 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2106 ; 4.177 ; 4.197 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2091 ; 4.115 ; 4.182 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3069 ; 5.976 ; 7.476 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4639 ; 7.240 ;40.150 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4554 ; 7.232 ;39.620 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8RNQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1292130273. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51958 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.64400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 4000, 200MM AMMONIUM SULFATE. REMARK 280 SOAKING: 25MM DODECANE, 16 HOURS, CRYOPROTECTED WITH 15% REMARK 280 GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.34350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.14150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.14150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 140.01525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.14150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.14150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.67175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.14150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.14150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 140.01525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.14150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.14150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.67175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 93.34350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 71 16.97 -152.08 REMARK 500 THR A 83 -80.51 -84.29 REMARK 500 ASP B 71 18.72 -150.68 REMARK 500 THR B 83 -82.28 -84.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 133 0.09 SIDE CHAIN REMARK 500 ARG B 133 0.07 SIDE CHAIN REMARK 500 ARG B 213 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 304 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 17 SG REMARK 620 2 HEM A 304 NA 98.1 REMARK 620 3 HEM A 304 NB 93.1 88.1 REMARK 620 4 HEM A 304 NC 88.1 173.0 88.3 REMARK 620 5 HEM A 304 ND 95.0 91.0 171.8 91.7 REMARK 620 6 HOH A 500 O 177.9 82.0 84.7 91.7 87.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 312 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 85 OE2 REMARK 620 2 HIS A 86 O 84.3 REMARK 620 3 SER A 89 OG 176.1 93.5 REMARK 620 4 HEM A 304 O1A 99.2 88.3 83.9 REMARK 620 5 HOH A 480 O 90.8 88.6 85.9 169.1 REMARK 620 6 HOH A 489 O 85.7 168.9 96.7 88.5 96.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 303 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 17 SG REMARK 620 2 HEM B 303 NA 91.0 REMARK 620 3 HEM B 303 NB 87.1 89.4 REMARK 620 4 HEM B 303 NC 93.6 173.8 86.8 REMARK 620 5 HEM B 303 ND 96.8 89.7 176.1 93.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 307 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 85 OE2 REMARK 620 2 HIS B 86 O 86.7 REMARK 620 3 SER B 89 OG 178.3 91.7 REMARK 620 4 HEM B 303 O1D 103.1 87.6 76.7 REMARK 620 5 HOH B 437 O 88.9 90.1 91.2 167.7 REMARK 620 6 HOH B 482 O 91.3 175.0 90.3 88.4 94.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8RNJ RELATED DB: PDB REMARK 900 RELATED ID: 8RNK RELATED DB: PDB REMARK 900 RELATED ID: 8RNL RELATED DB: PDB REMARK 900 RELATED ID: 8RNM RELATED DB: PDB REMARK 900 RELATED ID: 8RNN RELATED DB: PDB REMARK 900 RELATED ID: 8RNO RELATED DB: PDB REMARK 900 RELATED ID: 8RNP RELATED DB: PDB DBREF 8RNQ A -3 236 PDB 8RNQ 8RNQ -3 236 DBREF 8RNQ B -3 236 PDB 8RNQ 8RNQ -3 236 SEQRES 1 A 240 ALA VAL ASP PHE SER ALA HIS PRO TRP LYS ALA PRO GLY SEQRES 2 A 240 PRO ASN ASP SER ARG GLY PRO CYS PRO GLY LEU ASN THR SEQRES 3 A 240 LEU ALA ASN HIS GLY PHE LEU PRO ARG ASN GLY ARG ASN SEQRES 4 A 240 ILE SER VAL PRO MET ILE VAL LYS ALA GLY PHE GLU GLY SEQRES 5 A 240 TYR ASN VAL GLN SER ASP ILE LEU ILE LEU ALA GLY LYS SEQRES 6 A 240 VAL GLY MET LEU THR SER ARG GLU ALA ASP THR ILE SER SEQRES 7 A 240 LEU GLU ASP LEU LYS LEU HIS GLY THR ILE GLU HIS ASP SEQRES 8 A 240 ALA SER LEU SER ARG GLU ASP VAL ALA ILE GLY ASP ASN SEQRES 9 A 240 LEU HIS PHE ASN GLU ALA ILE PHE THR THR LEU ALA ASN SEQRES 10 A 240 SER ASN PRO GLY ALA ASP VAL TYR ASN ILE SER SER ALA SEQRES 11 A 240 ALA GLN VAL GLN HIS ASP ARG LEU ALA ASP SER VAL ALA SEQRES 12 A 240 ARG ASN PRO ASN VAL THR ASN THR ASP LEU THR ALA THR SEQRES 13 A 240 ILE ARG SER SER GLU SER ALA PHE TYR LEU THR VAL MET SEQRES 14 A 240 SER ALA GLY ASP PRO LEU ARG GLY GLU ALA PRO LYS LYS SEQRES 15 A 240 PHE VAL ASN VAL PHE PHE GLN GLU GLU ARG MET PRO ILE SEQRES 16 A 240 LYS GLU GLY TRP LYS ARG SER THR THR PRO ILE ASN LEU SEQRES 17 A 240 PRO LEU LEU GLY PRO ILE ILE ASP ARG ILE THR GLU LEU SEQRES 18 A 240 SER ASP TRP LYS PRO THR GLY ASP ASN CYS GLY ALA ILE SEQRES 19 A 240 VAL LEU GLY PRO GLY LEU SEQRES 1 B 240 ALA VAL ASP PHE SER ALA HIS PRO TRP LYS ALA PRO GLY SEQRES 2 B 240 PRO ASN ASP SER ARG GLY PRO CYS PRO GLY LEU ASN THR SEQRES 3 B 240 LEU ALA ASN HIS GLY PHE LEU PRO ARG ASN GLY ARG ASN SEQRES 4 B 240 ILE SER VAL PRO MET ILE VAL LYS ALA GLY PHE GLU GLY SEQRES 5 B 240 TYR ASN VAL GLN SER ASP ILE LEU ILE LEU ALA GLY LYS SEQRES 6 B 240 VAL GLY MET LEU THR SER ARG GLU ALA ASP THR ILE SER SEQRES 7 B 240 LEU GLU ASP LEU LYS LEU HIS GLY THR ILE GLU HIS ASP SEQRES 8 B 240 ALA SER LEU SER ARG GLU ASP VAL ALA ILE GLY ASP ASN SEQRES 9 B 240 LEU HIS PHE ASN GLU ALA ILE PHE THR THR LEU ALA ASN SEQRES 10 B 240 SER ASN PRO GLY ALA ASP VAL TYR ASN ILE SER SER ALA SEQRES 11 B 240 ALA GLN VAL GLN HIS ASP ARG LEU ALA ASP SER VAL ALA SEQRES 12 B 240 ARG ASN PRO ASN VAL THR ASN THR ASP LEU THR ALA THR SEQRES 13 B 240 ILE ARG SER SER GLU SER ALA PHE TYR LEU THR VAL MET SEQRES 14 B 240 SER ALA GLY ASP PRO LEU ARG GLY GLU ALA PRO LYS LYS SEQRES 15 B 240 PHE VAL ASN VAL PHE PHE GLN GLU GLU ARG MET PRO ILE SEQRES 16 B 240 LYS GLU GLY TRP LYS ARG SER THR THR PRO ILE ASN LEU SEQRES 17 B 240 PRO LEU LEU GLY PRO ILE ILE ASP ARG ILE THR GLU LEU SEQRES 18 B 240 SER ASP TRP LYS PRO THR GLY ASP ASN CYS GLY ALA ILE SEQRES 19 B 240 VAL LEU GLY PRO GLY LEU HET NAG A 301 14 HET NAG A 302 14 HET NAG A 303 14 HET HEM A 304 43 HET D12 A 305 12 HET PEG A 306 7 HET PEG A 307 7 HET GOL A 308 6 HET GOL A 309 6 HET PEG A 310 7 HET PEG A 311 7 HET MG A 312 1 HET SO4 A 313 5 HET SO4 A 314 5 HET NAG B 301 14 HET NAG B 302 14 HET HEM B 303 43 HET D12 B 304 12 HET D12 B 305 12 HET PEG B 306 7 HET MG B 307 1 HET SO4 B 308 5 HET SO4 B 309 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM D12 DODECANE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 6 HEM 2(C34 H32 FE N4 O4) FORMUL 7 D12 3(C12 H26) FORMUL 8 PEG 5(C4 H10 O3) FORMUL 10 GOL 2(C3 H8 O3) FORMUL 14 MG 2(MG 2+) FORMUL 15 SO4 4(O4 S 2-) FORMUL 26 HOH *394(H2 O) HELIX 1 AA1 ASP A -1 HIS A 3 5 5 HELIX 2 AA2 CYS A 17 HIS A 26 1 10 HELIX 3 AA3 SER A 37 ASN A 50 1 14 HELIX 4 AA4 GLN A 52 LEU A 65 1 14 HELIX 5 AA5 SER A 74 LEU A 80 5 7 HELIX 6 AA6 ASP A 94 GLY A 98 5 5 HELIX 7 AA7 ASN A 104 ASN A 113 1 10 HELIX 8 AA8 ILE A 123 ASN A 141 1 19 HELIX 9 AA9 THR A 147 MET A 165 1 19 HELIX 10 AB1 ASP A 169 ARG A 172 5 4 HELIX 11 AB2 LYS A 177 GLU A 187 1 11 HELIX 12 AB3 ASN A 203 SER A 218 1 16 HELIX 13 AB4 ASP B -1 HIS B 3 5 5 HELIX 14 AB5 CYS B 17 HIS B 26 1 10 HELIX 15 AB6 SER B 37 ASN B 50 1 14 HELIX 16 AB7 GLN B 52 LEU B 65 1 14 HELIX 17 AB8 SER B 74 LEU B 80 5 7 HELIX 18 AB9 ASN B 104 ASN B 113 1 10 HELIX 19 AC1 ILE B 123 ASN B 141 1 19 HELIX 20 AC2 THR B 147 MET B 165 1 19 HELIX 21 AC3 ASP B 169 ARG B 172 5 4 HELIX 22 AC4 LYS B 177 GLU B 187 1 11 HELIX 23 AC5 ASN B 203 SER B 218 1 16 SHEET 1 AA1 2 VAL A 120 ASN A 122 0 SHEET 2 AA1 2 GLU A 174 PRO A 176 -1 O ALA A 175 N TYR A 121 SHEET 1 AA2 2 VAL B 120 ASN B 122 0 SHEET 2 AA2 2 GLU B 174 PRO B 176 -1 O ALA B 175 N TYR B 121 SSBOND 1 CYS A 227 CYS B 227 1555 1555 2.10 LINK ND2 ASN A 35 C1 NAG A 303 1555 1555 1.46 LINK ND2 ASN A 122 C1 NAG A 301 1555 1555 1.43 LINK ND2 ASN A 143 C1 NAG A 302 1555 1555 1.45 LINK ND2 ASN B 122 C1 NAG B 301 1555 1555 1.46 LINK ND2 ASN B 143 C1 NAG B 302 1555 1555 1.43 LINK SG CYS A 17 FE HEM A 304 1555 1555 2.34 LINK OE2 GLU A 85 MG MG A 312 1555 1555 2.09 LINK O HIS A 86 MG MG A 312 1555 1555 2.22 LINK OG SER A 89 MG MG A 312 1555 1555 2.05 LINK O1A HEM A 304 MG MG A 312 1555 1555 2.18 LINK FE HEM A 304 O HOH A 500 1555 1555 2.24 LINK MG MG A 312 O HOH A 480 1555 1555 2.14 LINK MG MG A 312 O HOH A 489 1555 1555 2.11 LINK SG CYS B 17 FE HEM B 303 1555 1555 2.40 LINK OE2 GLU B 85 MG MG B 307 1555 1555 2.03 LINK O HIS B 86 MG MG B 307 1555 1555 2.11 LINK OG SER B 89 MG MG B 307 1555 1555 2.28 LINK O1D HEM B 303 MG MG B 307 1555 1555 2.18 LINK MG MG B 307 O HOH B 437 1555 1555 2.10 LINK MG MG B 307 O HOH B 482 1555 1555 2.14 CRYST1 76.283 76.283 186.687 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013109 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005357 0.00000