HEADER MEMBRANE PROTEIN 17-JAN-24 8RQ6 TITLE SOLUTION NMR STRUCTURE OF AMYLOID BETA PRECURSOR LIKE PROTEIN 2 TMD COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA PRECURSOR LIKE PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: APPH,AMYLOID BETA (A4) PRECURSOR-LIKE PROTEIN 2,AMYLOID COMPND 5 PROTEIN HOMOLOG,AMYLOID-LIKE PROTEIN 2,APLP-2,CDEI BOX-BINDING COMPND 6 PROTEIN,CDEBP,SPERM MEMBRANE PROTEIN YWK-II; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS TRANSMEMBRANE HELIX, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 40 AUTHOR C.MUHLE-GOLL,C.MOSER REVDAT 1 26-JUN-24 8RQ6 0 JRNL AUTH C.MOSER,N.GUSCHTSCHIN-SCHMIDT,M.SILBER,J.FLUM,C.MUHLE-GOLL JRNL TITL SUBSTRATE SELECTION CRITERIA IN REGULATED INTRAMEMBRANE JRNL TITL 2 PROTEOLYSIS. JRNL REF ACS CHEM NEUROSCI V. 15 1321 2024 JRNL REFN ESSN 1948-7193 JRNL PMID 38525994 JRNL DOI 10.1021/ACSCHEMNEURO.4C00068 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RQ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1292135982. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 UM NA APLP2, REMARK 210 TRIFLUOROETHANOL/WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-13C HSQC; REMARK 210 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.4.2, ARIA REMARK 210 2.3.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 40 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 690 81.58 56.15 REMARK 500 2 SER A 691 -81.68 61.45 REMARK 500 2 SER A 692 69.38 -154.29 REMARK 500 3 SER A 691 -168.79 -121.04 REMARK 500 3 SER A 692 -78.74 65.62 REMARK 500 4 SER A 692 15.09 -145.25 REMARK 500 5 SER A 692 -37.72 -144.46 REMARK 500 6 SER A 692 86.81 56.63 REMARK 500 6 ARG A 717 -60.02 -92.83 REMARK 500 7 LEU A 690 24.24 -145.12 REMARK 500 8 LEU A 690 -48.62 -159.84 REMARK 500 8 SER A 692 -72.39 -125.60 REMARK 500 9 LEU A 690 86.08 56.33 REMARK 500 9 SER A 692 -12.11 -146.31 REMARK 500 9 LYS A 718 -83.70 62.33 REMARK 500 10 LYS A 718 -70.83 -85.06 REMARK 500 11 LYS A 718 -173.73 57.97 REMARK 500 12 SER A 691 -76.32 -96.55 REMARK 500 12 LYS A 718 74.07 53.89 REMARK 500 13 SER A 691 -61.79 -152.68 REMARK 500 13 LYS A 718 98.00 57.07 REMARK 500 14 SER A 691 -73.25 -152.77 REMARK 500 14 ARG A 717 -60.47 -127.88 REMARK 500 14 LYS A 718 -65.09 -175.67 REMARK 500 17 SER A 692 54.46 -97.03 REMARK 500 18 LYS A 718 90.72 54.56 REMARK 500 19 SER A 691 -173.13 58.91 REMARK 500 19 SER A 692 99.21 60.20 REMARK 500 19 LYS A 718 76.15 49.88 REMARK 500 21 LEU A 690 -84.39 60.87 REMARK 500 21 SER A 692 82.77 56.36 REMARK 500 22 SER A 692 -38.64 -138.90 REMARK 500 23 SER A 691 118.78 -166.08 REMARK 500 23 LYS A 718 -174.21 58.86 REMARK 500 24 SER A 692 83.31 -170.50 REMARK 500 25 SER A 691 78.28 56.68 REMARK 500 26 SER A 692 35.53 -154.50 REMARK 500 27 SER A 691 -74.06 -154.67 REMARK 500 28 SER A 692 -14.69 -161.68 REMARK 500 29 SER A 692 -58.66 -155.69 REMARK 500 29 LYS A 718 84.95 49.67 REMARK 500 30 LEU A 690 91.36 57.64 REMARK 500 30 LYS A 718 -86.19 -152.21 REMARK 500 32 LEU A 690 -44.42 -138.89 REMARK 500 34 SER A 691 92.42 58.35 REMARK 500 35 LEU A 690 95.25 57.68 REMARK 500 35 SER A 691 102.96 61.38 REMARK 500 35 LYS A 718 96.89 -68.62 REMARK 500 36 SER A 692 26.56 -149.44 REMARK 500 37 LEU A 690 -65.67 -97.23 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34893 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF AMYLOID BETA PRECURSOR LIKE PROTEIN 2 TMD DBREF 8RQ6 A 689 719 UNP Q06481 APLP2_HUMAN 689 719 SEQRES 1 A 31 SER LEU SER SER SER ALA LEU ILE GLY LEU LEU VAL ILE SEQRES 2 A 31 ALA VAL ALA ILE ALA THR VAL ILE VAL ILE SER LEU VAL SEQRES 3 A 31 MET LEU ARG LYS ARG HELIX 1 AA1 ALA A 694 LYS A 718 1 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1