HEADER HYDROLASE 25-JAN-24 8RT3 TITLE HEN EGG WHITE LYSOZYME CRYSTALLIZED WITH BIOASSEMBLER IN SPACE TITLE 2 MICROGRAVITY CONDITIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS LYSOZYME, GADOLINIUM COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.MACCARTHY,E.V.KOUDAN,S.V.PETROV,A.A.LEVIN,Y.D.KHESUANI, AUTHOR 2 V.BORSHCHEVSKIY REVDAT 1 27-MAR-24 8RT3 0 JRNL AUTH C.MACCARTHY,E.V.KOUDAN,S.V.PETROV,A.A.LEVIN,Y.D.KHESUANI, JRNL AUTH 2 V.BORSHCHEVSKIY JRNL TITL HEN EGG WHITE LYSOZYME CRYSTALLIZED WITH BIOASSEMBLER IN JRNL TITL 2 SPACE MICROGRAVITY CONDITIONS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 91833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.123 REMARK 3 R VALUE (WORKING SET) : 0.122 REMARK 3 FREE R VALUE : 0.142 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.350 REMARK 3 FREE R VALUE TEST SET COUNT : 3078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.4500 - 3.0600 1.00 4104 146 0.1511 0.1543 REMARK 3 2 3.0600 - 2.4300 1.00 4105 142 0.1280 0.1367 REMARK 3 3 2.4300 - 2.1200 1.00 4142 144 0.1086 0.1341 REMARK 3 4 2.1200 - 1.9300 1.00 4098 141 0.1020 0.1222 REMARK 3 5 1.9300 - 1.7900 1.00 4117 139 0.0969 0.1117 REMARK 3 6 1.7900 - 1.6800 1.00 4117 141 0.0924 0.1271 REMARK 3 7 1.6800 - 1.6000 1.00 4118 144 0.0814 0.1098 REMARK 3 8 1.6000 - 1.5300 1.00 4139 145 0.0805 0.1241 REMARK 3 9 1.5300 - 1.4700 1.00 4092 143 0.0937 0.1424 REMARK 3 10 1.4700 - 1.4200 1.00 4119 140 0.1024 0.1272 REMARK 3 11 1.4200 - 1.3800 1.00 4127 145 0.0946 0.1269 REMARK 3 12 1.3800 - 1.3400 1.00 4076 144 0.0939 0.1214 REMARK 3 13 1.3400 - 1.3000 1.00 4103 141 0.0958 0.1328 REMARK 3 14 1.3000 - 1.2700 1.00 4149 142 0.1092 0.1432 REMARK 3 15 1.2700 - 1.2400 1.00 4120 143 0.1502 0.1884 REMARK 3 16 1.2400 - 1.2100 1.00 4095 145 0.1619 0.1796 REMARK 3 17 1.2100 - 1.1900 1.00 4108 143 0.1799 0.2262 REMARK 3 18 1.1900 - 1.1700 0.99 4072 148 0.2048 0.1847 REMARK 3 19 1.1700 - 1.1500 0.97 3979 139 0.2396 0.2464 REMARK 3 20 1.1500 - 1.1300 0.94 3902 135 0.2590 0.3172 REMARK 3 21 1.1300 - 1.1100 0.88 3576 130 0.3025 0.2832 REMARK 3 22 1.1100 - 1.0900 0.79 3297 98 0.3122 0.3032 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.112 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 1261 REMARK 3 ANGLE : 1.588 1725 REMARK 3 CHIRALITY : 0.120 175 REMARK 3 PLANARITY : 0.016 227 REMARK 3 DIHEDRAL : 12.587 509 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RT3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1292135671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91860 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.090 REMARK 200 RESOLUTION RANGE LOW (A) : 34.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE 0.1M AT PH 4.8, NACL REMARK 280 13%, GD(HP-D03A) 250MM, 294K, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.52500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.60500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.28750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.60500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.76250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.60500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.60500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.28750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.60500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.60500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.76250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 19.52500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1118 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1148 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1343 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 128 C LEU A 129 N 0.191 REMARK 500 ARG A 128 C LEU A 129 N 0.189 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 52 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 18 102.40 -59.66 REMARK 500 ASN A 19 11.28 90.60 REMARK 500 ARG A 68 31.88 -141.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1352 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A1353 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH A1354 DISTANCE = 10.76 ANGSTROMS REMARK 525 HOH A1355 DISTANCE = 12.56 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1008 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 60 O REMARK 620 2 CYS A 64 O 90.0 REMARK 620 3 SER A 72 OG 88.2 168.0 REMARK 620 4 ARG A 73 O 96.6 90.1 101.9 REMARK 620 5 HOH A1198 O 97.5 87.9 80.6 165.8 REMARK 620 6 HOH A1233 O 171.9 97.2 84.0 87.0 79.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD A1001 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DO3 A1002 N2 REMARK 620 2 DO3 A1002 N3 68.4 REMARK 620 3 DO3 A1002 N4 104.3 67.6 REMARK 620 4 DO3 A1002 O1 84.3 152.7 123.3 REMARK 620 5 DO3 A1002 O3 63.1 86.0 153.6 80.2 REMARK 620 6 DO3 A1002 O5 124.6 66.5 86.7 134.0 83.2 REMARK 620 7 DO3 A1002 N1 63.8 100.9 68.2 66.4 118.8 154.9 REMARK 620 8 DO3 A1002 O7 155.0 128.9 73.0 77.4 128.6 80.3 93.1 REMARK 620 9 HOH A1104 O 127.4 127.5 128.3 68.4 68.4 65.6 131.5 60.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD A1001 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1303 O REMARK 620 2 HOH A1314 O 71.9 REMARK 620 3 HOH A1353 O 97.3 79.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD A1003 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DO3 A1004 O3 REMARK 620 2 DO3 A1004 O5 84.3 REMARK 620 3 DO3 A1004 N2 68.3 129.9 REMARK 620 4 DO3 A1004 N3 95.0 70.1 71.5 REMARK 620 5 DO3 A1004 N1 122.8 152.5 65.5 100.4 REMARK 620 6 DO3 A1004 N4 163.3 89.1 105.2 68.3 63.6 REMARK 620 7 DO3 A1004 O1 73.7 138.2 73.9 145.3 62.7 120.2 REMARK 620 8 DO3 A1004 O7 130.5 83.4 146.0 124.7 81.4 63.5 84.5 REMARK 620 9 HOH A1109 O 62.9 66.1 126.3 132.2 127.4 127.7 72.3 68.3 REMARK 620 N 1 2 3 4 5 6 7 8 DBREF 8RT3 A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET GD A1001 2 HET DO3 A1002 57 HET GD A1003 2 HET DO3 A1004 54 HET NO3 A1005 4 HET CL A1006 1 HET CL A1007 1 HET NA A1008 1 HET CL A1009 1 HET CL A1010 1 HET CL A1011 1 HET CL A1012 2 HETNAM GD GADOLINIUM ATOM HETNAM DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10- HETNAM 2 DO3 TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID HETNAM NO3 NITRATE ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 2 GD 2(GD) FORMUL 3 DO3 2(C17 H32 N4 O7) FORMUL 6 NO3 N O3 1- FORMUL 7 CL 6(CL 1-) FORMUL 9 NA NA 1+ FORMUL 14 HOH *255(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 ASP A 101 1 14 HELIX 6 AA6 ASN A 103 ALA A 107 5 5 HELIX 7 AA7 TRP A 108 CYS A 115 1 8 HELIX 8 AA8 VAL A 120 ILE A 124 5 5 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.05 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.08 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.05 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.04 LINK O SER A 60 NA NA A1008 1555 1555 2.39 LINK O CYS A 64 NA NA A1008 1555 1555 2.41 LINK OG SER A 72 NA NA A1008 1555 1555 2.45 LINK O ARG A 73 NA NA A1008 1555 1555 2.44 LINK GD A GD A1001 N2 ADO3 A1002 1555 1555 2.65 LINK GD A GD A1001 N3 ADO3 A1002 1555 1555 2.65 LINK GD A GD A1001 N4 ADO3 A1002 1555 1555 2.66 LINK GD A GD A1001 O1 ADO3 A1002 1555 1555 2.38 LINK GD A GD A1001 O3 ADO3 A1002 1555 1555 2.40 LINK GD A GD A1001 O5 ADO3 A1002 1555 1555 2.34 LINK GD A GD A1001 N1 ADO3 A1002 1555 1555 2.64 LINK GD A GD A1001 O7 ADO3 A1002 1555 1555 2.32 LINK GD A GD A1001 O AHOH A1104 1555 1555 2.31 LINK GD B GD A1001 O BHOH A1303 1555 1555 2.66 LINK GD B GD A1001 O BHOH A1314 1555 1555 2.63 LINK GD B GD A1001 O BHOH A1353 1555 1555 2.65 LINK GD A GD A1003 O3 ADO3 A1004 1555 1555 2.39 LINK GD A GD A1003 O5 ADO3 A1004 1555 1555 2.35 LINK GD A GD A1003 N2 ADO3 A1004 1555 1555 2.66 LINK GD A GD A1003 N3 ADO3 A1004 1555 1555 2.64 LINK GD A GD A1003 N1 ADO3 A1004 1555 1555 2.63 LINK GD A GD A1003 N4 ADO3 A1004 1555 1555 2.63 LINK GD A GD A1003 O1 ADO3 A1004 1555 1555 2.38 LINK GD A GD A1003 O7 ADO3 A1004 1555 1555 2.32 LINK GD A GD A1003 O AHOH A1109 1555 1555 2.50 LINK NA NA A1008 O HOH A1198 1555 1555 2.46 LINK NA NA A1008 O HOH A1233 1555 1555 2.43 CRYST1 77.210 77.210 39.050 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012952 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025608 0.00000