HEADER LYASE(CARBON-CARBON) 13-NOV-90 8RUB OBSLTE 01-AUG-96 8RUB 8RUC TITLE CRYSTALLOGRAPHIC ANALYSIS OF RIBULOSE 1,5-BISPHOSPHATE TITLE 2 CARBOXYLASE FROM SPINACH AT 2.4 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE:; COMPND 3 CHAIN: S; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE:; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 MOL_ID: 2 KEYWDS LYASE(CARBON-CARBON) EXPDTA X-RAY DIFFRACTION AUTHOR S.KNIGHT,I.ANDERSSON,C.-I.BRANDEN REVDAT 1 15-JUL-92 8RUB 0 JRNL AUTH S.KNIGHT,I.ANDERSSON,C.-I.BRANDEN JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF RIBULOSE JRNL TITL 2 1,5-BISPHOSPHATE CARBOXYLASE FROM SPINACH AT 2.4 JRNL TITL 3 ANGSTROMS RESOLUTION JRNL REF J.MOL.BIOL. V. 215 113 1990 JRNL REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.KNIGHT,I.ANDERSSON,C.-I.BRANDEN REMARK 1 TITL REEXAMINATION OF THE THREE-DIMENSIONAL STRUCTURE REMARK 1 TITL 2 OF THE SMALL SUBUNIT OF RUBISCO FROM HIGHER PLANTS REMARK 1 REF SCIENCE V. 244 702 1989 REMARK 1 REFN ASTM SCIEAS US ISSN 0036-8075 REMARK 1 REFERENCE 2 REMARK 1 AUTH I.ANDERSSON,S.KNIGHT,G.SCHNEIDER,Y.LINDQVIST, REMARK 1 AUTH 2 T.LUNDQVIST,C.-I.BRANDEN,G.H.LORIMER REMARK 1 TITL CRYSTAL STRUCTURE OF THE ACTIVE SITE OF REMARK 1 TITL 2 RIBULOSE-BISPHOSPHATE CARBOXYLASE REMARK 1 REF NATURE V. 337 229 1989 REMARK 1 REFN ASTM NATUAS UK ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. NULL ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4666 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RUB COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 5 REMARK 5 8RUB RESIDUE L 201 IS A MODIFIED ACTIVATOR LYSINE WHICH IS REMARK 5 8RUB CARBAMYLATED AT THE EPSILON-AMINO GROUP. THE CARBAMYL REMARK 5 8RUB ACTIVATOR GROUP IS PRESENTED AS HET GROUP *CBX* AT THE REMARK 5 8RUB END OF CHAIN *L*. 8RUB REMARK 6 REMARK 6 8RUB *SITE* RECORD *ACT* BELOW DESCRIBES THE CATALYTIC REMARK 6 RESIDUES. 8RUB REMARK 7 REMARK 7 8RUB NO ELECTRON DENSITY IS OBSERVED FOR THE FIRST NINE REMARK 7 8RUB RESIDUES OF THE LARGE SUBUNIT. THE ELECTRON DENSITY REMARK 7 FOR 8RUB RESIDUES SER L 10, VAL L 11, GLU L 12 AND PHE L 13 REMARK 7 IS WEAK. 8RUB REMARK 8 REMARK 8 8RUB THE FOLLOWING DEVIATIONS FROM THE PUBLISHED SEQUENCE REMARK 8 OF THE 8RUB SMALL SUBUNIT ARE FOUND: 8RUB CHEMICAL: PRO S REMARK 8 6, PRO S 41, GLY S 77, PHE S 101, 8RUB THIS ENTRY: ILE S 6, REMARK 8 CYS S 41, CYS S 77, ILE S 101, 8RUB CHEMICAL: ASN S 105 ASP REMARK 8 S 106, GLU S 109 8RUB THIS ENTRY: ASP S 105 ASN S 106, GLN REMARK 8 S 109 8RUB REMARK 9 REMARK 9 8RUB THE SHEET PRESENTED AS *CT* ON SHEET RECORDS BELOW IS REMARK 9 8RUB ACTUALLY AN EIGHT-STRANDED BETA-BARREL. THIS IS 8RUB REMARK 9 REPRESENTED BY A NINE-STRANDED SHEET IN WHICH THE FIRST AND REMARK 9 8RUB LAST STRANDS ARE IDENTICAL. 8RUB REMARK 10 REMARK 10 8RUB THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT CONTAINS FOUR REMARK 10 LARGE 8RUB AND FOUR SMALL SUBUNITS RELATED BY A FOUR-FOLD REMARK 10 AXIS 8RUB THROUGH THE MOLECULAR CENTER AT X=0, Y=1/4, Z=1/ REMARK 10 4. THE 8RUB TRANSFORMATIONS GIVEN IN THE *MTRIX* RECORDS REMARK 10 BELOW WILL 8RUB GENERATE AN L4S4 HALF-MOLECULE FROM THE REMARK 10 COORDINATES IN 8RUB ENTRY TO GENERATE THE FULL L8S8 REMARK 10 MOLECULE FROM L4S4 THE 8RUB FOLLOWING TWO-FOLD ROTATION REMARK 10 ABOUT THE CRYSTALLOGRAPHIC 8RUB TWOFOLD AXIS ALONG Y HAS TO REMARK 10 BE APPLIED: 8RUB 8RUB -1.0 0.0 0.0 0.0 8RUB 0.0 1.0 0.0 + REMARK 10 0.0 8RUB 0.0 0.0 -1.0 100.65 8RUB REMARK 11 REMARK 11 8RUB CHAINS *A* ... *H* ARE AS DESCRIBED IN THE *JRNL* REMARK 11 REFERENCE 8RUB CHAIN *S* IN THIS ENTRY CORRESPONDS TO CHAIN REMARK 11 *S1* IN THE 8RUB *JRNL* REFERENCE AND CHAIN *L* IN THIS REMARK 11 ENTRY CORRESPONDS TO 8RUB CHAIN *B* IN THE *JRNL* REMARK 11 REFERENCE. 8RUB THE TRANSFORMATION PRESENTED IN MTRIX 1 REMARK 11 RECORDS GENERATES 8RUB THE LARGE SUBUNIT *D* AS DESCRIBED REMARK 11 IN THE *JRNL* REFERENCE 8RUB ABOVE WHEN APPLIED TO CHAIN * REMARK 11 B*. 8RUB THE TRANSFORMATION PRESENTED IN MTRIX 1 RECORDS REMARK 11 GENERATES 8RUB THE SMALL SUBUNIT *S2* AS DESCRIBED IN THE * REMARK 11 JRNL* REFERENCE 8RUB ABOVE WHEN APPLIED TO CHAIN *S*. 8RUB REMARK 11 THE TRANSFORMATION PRESENTED IN MTRIX 2 RECORDS GENERATES REMARK 11 8RUB THE LARGE SUBUNIT *F* AS DESCRIBED IN THE *JRNL* REMARK 11 REFERENCE 8RUB ABOVE WHEN APPLIED TO CHAIN *B*. 8RUB THE REMARK 11 TRANSFORMATION PRESENTED IN MTRIX 2 RECORDS GENERATES 8RUB REMARK 11 THE SMALL SUBUNIT *S3* AS DESCRIBED IN THE *JRNL* REFERENCE REMARK 11 8RUB ABOVE WHEN APPLIED TO CHAIN *S*. 8RUB THE REMARK 11 TRANSFORMATION PRESENTED IN MTRIX 3 RECORDS GENERATES 8RUB REMARK 11 THE LARGE SUBUNIT *H* AS DESCRIBED IN THE *JRNL* REFERENCE REMARK 11 8RUB ABOVE WHEN APPLIED TO CHAIN *B*. 8RUB THE REMARK 11 TRANSFORMATION PRESENTED IN MTRIX 3 RECORDS GENERATES 8RUB REMARK 11 THE SMALL SUBUNIT *S4* AS DESCRIBED IN THE *JRNL* REFERENCE REMARK 11 8RUB ABOVE WHEN APPLIED TO CHAIN *S*. 8RUB REMARK 12 REMARK 12 8RUB IN THE CATALYTICALLY COMPETENT MOLECULE, DIMERS OF THE REMARK 12 LARG 8RUB SUBUNITS FORM FUNCTIONAL UNITS. IN THE *JRNL* REMARK 12 REFERENCE 8RUB THESE DIMERS ARE DESIGNATED *AB*, *CD*, *EF* REMARK 12 AND *GH*. 8RUB REMARK 13 REMARK 13 8RUB THESE DIMERS CAN BE GENERATED BY APPLICATION OF THE REMARK 13 8RUB *MTRIX* TRANSFORMATIONS TO THE COORDINATES FOR THE *L* REMARK 13 8RUB CHAIN, FOLLOWED BY THE CRYSTALLOGRAPHIC TWO-FOLD REMARK 13 ROTATION 8RUB DESCRIBED IN REMARK 10. 8RUB REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,1/2+Z REMARK 290 3555 -X,Y,1/2-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 1/2+X,1/2+Y,Z REMARK 290 6555 1/2-X,1/2-Y,1/2+Z REMARK 290 7555 1/2-X,1/2+Y,1/2-Z REMARK 290 8555 1/2+X,1/2-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 100.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 78.60000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.60000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 78.60000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.60000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 100.65000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 78.60000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 78.60000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 100.65000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 78.60000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 78.60000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: S, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET L 1 REMARK 465 SER L 2 REMARK 465 PRO L 3 REMARK 465 GLN L 4 REMARK 465 THR L 5 REMARK 465 GLU L 6 REMARK 465 THR L 7 REMARK 465 LYS L 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 12 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 NZ LYS L 201 C CBX L 201 1.31 REMARK 500 NZ LYS L 201 O2 CBX L 201 2.17 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE S 12 CA - C - N ANGL. DEV. = 20.9 DEGREES REMARK 500 LYS L 356 CB - CG - CD ANGL. DEV. =-21.8 DEGREES REMARK 500 ARG L 358 CB - CG - CD ANGL. DEV. = 24.0 DEGREES REMARK 500 ARG L 358 CG - CD - NE ANGL. DEV. =-29.3 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS S 71 -117.68 52.81 SEQRES 1 S 123 MET GLN VAL TRP PRO ILE LEU GLY LEU LYS LYS PHE GLU SEQRES 2 S 123 THR LEU SER TYR LEU PRO PRO LEU THR THR GLU GLN LEU SEQRES 3 S 123 LEU ALA GLU VAL ASN TYR LEU LEU VAL LYS GLY TRP ILE SEQRES 4 S 123 PRO CYS LEU GLU PHE GLU VAL LYS ASP GLY PHE VAL TYR SEQRES 5 S 123 ARG GLU HIS ASP LYS SER PRO GLY TYR TYR ASP GLY ARG SEQRES 6 S 123 TYR TRP THR MET TRP LYS LEU PRO MET PHE GLY CYS THR SEQRES 7 S 123 ASP PRO ALA GLN VAL VAL ASN GLU VAL GLU GLU VAL LYS SEQRES 8 S 123 LYS ALA TYR PRO ASP ALA PHE VAL ARG ILE ILE GLY PHE SEQRES 9 S 123 ASP ASN LYS ARG GLN VAL GLN CYS ILE SER PHE ILE ALA SEQRES 10 S 123 TYR LYS PRO ALA GLY TYR SEQRES 1 L 475 MET SER PRO GLN THR GLU THR LYS ALA SER VAL GLU PHE SEQRES 2 L 475 LYS ALA GLY VAL LYS ASP TYR LYS LEU THR TYR TYR THR SEQRES 3 L 475 PRO GLU TYR GLU THR LEU ASP THR ASP ILE LEU ALA ALA SEQRES 4 L 475 PHE ARG VAL SER PRO GLN PRO GLY VAL PRO PRO GLU GLU SEQRES 5 L 475 ALA GLY ALA ALA VAL ALA ALA GLU SER SER THR GLY THR SEQRES 6 L 475 TRP THR THR VAL TRP THR ASP GLY LEU THR ASN LEU ASP SEQRES 7 L 475 ARG TYR LYS GLY ARG CYS TYR HIS ILE GLU PRO VAL ALA SEQRES 8 L 475 GLY GLU GLU ASN GLN TYR ILE CYS TYR VAL ALA TYR PRO SEQRES 9 L 475 LEU ASP LEU PHE GLU GLU GLY SER VAL THR ASN MET PHE SEQRES 10 L 475 THR SER ILE VAL GLY ASN VAL PHE GLY PHE LYS ALA LEU SEQRES 11 L 475 ARG ALA LEU ARG LEU GLU ASP LEU ARG ILE PRO VAL ALA SEQRES 12 L 475 TYR VAL LYS THR PHE GLN GLY PRO PRO HIS GLY ILE GLN SEQRES 13 L 475 VAL GLU ARG ASP LYS LEU ASN LYS TYR GLY ARG PRO LEU SEQRES 14 L 475 LEU GLY CYS THR ILE LYS PRO LYS LEU GLY LEU SER ALA SEQRES 15 L 475 LYS ASN TYR GLY ARG ALA VAL TYR GLU CYS LEU ARG GLY SEQRES 16 L 475 GLY LEU ASP PHE THR LYS ASP ASP GLU ASN VAL ASN SER SEQRES 17 L 475 GLN PRO PHE MET ARG TRP ARG ASP ARG PHE LEU PHE CYS SEQRES 18 L 475 ALA GLU ALA LEU TYR LYS ALA GLN ALA GLU THR GLY GLU SEQRES 19 L 475 ILE LYS GLY HIS TYR LEU ASN ALA THR ALA GLY THR CYS SEQRES 20 L 475 GLU ASP MET MET LYS ARG ALA VAL PHE ALA ARG GLU LEU SEQRES 21 L 475 GLY VAL PRO ILE VAL MET HIS ASP TYR LEU THR GLY GLY SEQRES 22 L 475 PHE THR ALA ASN THR THR LEU SER HIS TYR CYS ARG ASP SEQRES 23 L 475 ASN GLY LEU LEU LEU HIS ILE HIS ARG ALA MET HIS ALA SEQRES 24 L 475 VAL ILE ASP ARG GLN LYS ASN HIS GLY MET HIS PHE ARG SEQRES 25 L 475 VAL LEU ALA LYS ALA LEU ARG LEU SER GLY GLY ASP HIS SEQRES 26 L 475 ILE HIS SER GLY THR VAL VAL GLY LYS LEU GLU GLY GLU SEQRES 27 L 475 ARG ASP ILE THR LEU GLY PHE VAL ASP LEU LEU ARG ASP SEQRES 28 L 475 ASP TYR THR GLU LYS ASP ARG SER ARG GLY ILE TYR PHE SEQRES 29 L 475 THR GLN SER TRP VAL SER THR PRO GLY VAL LEU PRO VAL SEQRES 30 L 475 ALA SER GLY GLY ILE HIS VAL TRP HIS MET PRO ALA LEU SEQRES 31 L 475 THR GLU ILE PHE GLY ASP ASP SER VAL LEU GLN PHE GLY SEQRES 32 L 475 GLY GLY THR LEU GLY HIS PRO TRP GLY ASN ALA PRO GLY SEQRES 33 L 475 ALA VAL ALA ASN ARG VAL ALA LEU GLU ALA CYS VAL GLN SEQRES 34 L 475 ALA ARG ASN GLU GLY ARG ASP LEU ALA ARG GLU GLY ASN SEQRES 35 L 475 THR ILE ILE ARG GLU ALA THR LYS TRP SER PRO GLU LEU SEQRES 36 L 475 ALA ALA ALA CYS GLU VAL TRP LYS GLU ILE LYS PHE GLU SEQRES 37 L 475 PHE PRO ALA MET ASP THR VAL FTNOTE 1 PROLINE L 176 IS A CIS PROLINE. FTNOTE 2 LYS L 201 IS CARBAMYLATED AT THE NZ POSITION. FTNOTE 3 THE ELECTRON DENSITY MAP DOES NOT ALLOW ONE TO DEDUCE IF FTNOTE 3 THE C3 HYDROXYL GROUP OF CAP IS CIS OR TRANS TO THE C2 FTNOTE 3 HYDROXYL GROUP. IN THIS ENTRY C3 HYDROXYL GROUP IS TRANS FTNOTE 3 WITH RESPECT TO THE C2 HYDROXYL GROUP. HET MG L 476 1 HET CBX L 201 3 HET CAP 1 21 HETNAM MG MAGNESIUM ION HETNAM CBX CARBOXY GROUP HETNAM CAP 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE FORMUL 3 MG MG 2+ FORMUL 4 CBX C H2 O2 FORMUL 5 CAP C6 H14 O13 P2 HELIX 1 A THR S 23 VAL S 35 1SMALL SUBUNIT 13 HELIX 2 B PRO S 80 ALA S 93 1SMALL SUBUNIT 14 HELIX 3 B PRO L 50 GLU L 60 1LARGE SUBUNIT,N-TERM DOMAIN 11 HELIX 4 C VAL L 113 VAL L 121 1LARGE SUBUNIT,N-TERM DOMAIN 9 HELIX 5 D VAL L 142 VAL L 145 1LARGE SUBUNIT,N-TERM DOMAIN 4 HELIX 6 E ILE L 155 LEU L 162 1LARGE SUBUNIT,C-TERM DOMAIN 8 HELIX 7 1 ALA L 182 ARG L 194 1LARGE SUBUNIT,C-TERM DOMAIN 13 HELIX 8 2 TRP L 214 THR L 232 1LARGE SUBUNIT,C-TERM DOMAIN 19 HELIX 9 3 CYS L 247 LEU L 260 1LARGE SUBUNIT,C-TERM DOMAIN 14 HELIX 10 4 PHE L 274 ASN L 287 1LARGE SUBUNIT,C-TERM DOMAIN 14 HELIX 11 F HIS L 298 ASP L 302 1LARGE SUBUNIT,C-TERM DOMAIN 5 HELIX 12 5 PHE L 311 SER L 321 1LARGE SUBUNIT,C-TERM DOMAIN 11 HELIX 13 6 ARG L 339 ARG L 350 1LARGE SUBUNIT,C-TERM DOMAIN 12 HELIX 14 7 MET L 387 PHE L 394 1LARGE SUBUNIT,C-TERM DOMAIN 8 HELIX 15 P GLY L 404 LEU L 407 1LARGE SUBUNIT,C-TERM DOMAIN 4 HELIX 16 8 ASN L 413 ASN L 432 1LARGE SUBUNIT,C-TERM DOMAIN 20 HELIX 17 G LEU L 437 TRP L 451 1LARGE SUBUNIT,C-TERM DOMAIN 15 HELIX 18 H PRO L 453 TRP L 462 1LARGE SUBUNIT,C-TERM DOMAIN 10 SHEET 1 NT 5 TYR L 24 THR L 26 0 SHEET 2 NT 5 ARG L 83 PRO L 89 1 SHEET 3 NT 5 TYR L 97 TYR L 103 -1 SHEET 4 NT 5 ILE L 36 PRO L 44 -1 SHEET 5 NT 5 LEU L 130 ARG L 139 -1 SHEET 1 CT 9 LEU L 169 GLY L 171 0 SHEET 2 CT 9 PHE L 199 LYS L 201 1 SHEET 3 CT 9 GLY L 237 ASN L 241 1 SHEET 4 CT 9 ILE L 264 ASP L 268 1 SHEET 5 CT 9 LEU L 290 HIS L 294 1 SHEET 6 CT 9 HIS L 325 HIS L 327 1 SHEET 7 CT 9 LEU L 375 SER L 379 1 SHEET 8 CT 9 VAL L 399 GLN L 401 1 SHEET 9 CT 9 LEU L 169 GLY L 171 1 SHEET 1 S 4 THR S 68 MET S 74 0 SHEET 2 S 4 LEU S 34 GLU S 45 -1 SHEET 3 S 4 PHE S 98 ASP S 105 -1 SHEET 4 S 4 VAL S 110 TYR S 118 -1 CISPEP 1 LYS L 175 PRO L 176 0 2.15 SITE 1 ACT 5 CBX L 201 LYS L 201 ASP L 203 GLU L 204 SITE 2 ACT 5 MG L 476 CRYST1 157.200 157.200 201.300 90.00 90.00 90.00 C 2 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006361 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004968 0.00000 MTRIX1 1 0.000987 0.999507 -0.031395 -37.70065 MTRIX2 1 -0.999507 0.000000 -0.031411 40.88076 MTRIX3 1 -0.031395 0.031411 0.999013 -1.18479 MTRIX1 2 -0.998027 0.000000 -0.062790 3.15992 MTRIX2 2 0.000000 -1.000000 0.000000 78.60000 MTRIX3 2 -0.062790 0.000000 0.998027 0.09930 MTRIX1 3 0.000987 -0.999507 -0.031395 40.86057 MTRIX2 3 0.999507 0.000000 0.031411 37.71924 MTRIX3 3 -0.031395 -0.031411 0.999013 1.28409