HEADER OXIDOREDUCTASE 31-JAN-24 8RUV TITLE HIF PROLYL HYDROXYLASE 2 (PHD2) T387I VARIANT BOUND TO FE(III), 2- TITLE 2 OXOGLUTARATE (2OG) AND HYPOXIA-INDUCIBLE FACTOR 2ALPHA (HIF2ALPHA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2,HIF-PH2,HIF- COMPND 5 PROLYL HYDROXYLASE 2,HPH-2,PROLYL HYDROXYLASE DOMAIN-CONTAINING COMPND 6 PROTEIN 2,PHD2,SM-20; COMPND 7 EC: 1.14.11.29; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: HYPOXIA-INDUCIBLE FACTOR-2ALPHA; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: EPAS-1,BASIC-HELIX-LOOP-HELIX-PAS PROTEIN MOP2,CLASS E BASIC COMPND 13 HELIX-LOOP-HELIX PROTEIN 73,BHLHE73,HIF-1-ALPHA-LIKE FACTOR,HLF, COMPND 14 HYPOXIA-INDUCIBLE FACTOR 2-ALPHA,HIF-2-ALPHA,HIF2-ALPHA,MEMBER OF PAS COMPND 15 PROTEIN 2,PAS DOMAIN-CONTAINING PROTEIN 2; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGLN1, C1ORF12, PNAS-118, PNAS-137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS 2OG OXYGENASE, PROLYL HYDROXYLASE, OXYGEN SENSING, HYPOXIA, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.FIORINI,C.J.SCHOFIELD,F.ARIF,M.M.KIBRIA REVDAT 1 12-FEB-25 8RUV 0 JRNL AUTH G.FIORINI,C.J.SCHOFIELD JRNL TITL INVESTIGATING GATEKEEPER RESIDUES IN PROLYL HYDROXYLASE 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1285 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.2500 - 3.4500 1.00 2956 162 0.1924 0.2040 REMARK 3 2 3.4500 - 2.7400 1.00 2777 150 0.2105 0.2707 REMARK 3 3 2.7400 - 2.3900 1.00 2774 138 0.2206 0.2242 REMARK 3 4 2.3900 - 2.1800 1.00 2759 148 0.2162 0.2650 REMARK 3 5 2.1800 - 2.0200 1.00 2735 141 0.2338 0.2440 REMARK 3 6 2.0200 - 1.9000 1.00 2724 136 0.2888 0.3272 REMARK 3 7 1.9000 - 1.8100 1.00 2724 115 0.3507 0.3392 REMARK 3 8 1.8100 - 1.7300 1.00 2704 149 0.4125 0.4097 REMARK 3 9 1.7300 - 1.6600 0.94 2534 146 0.4641 0.4516 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.323 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1943 REMARK 3 ANGLE : 0.755 2647 REMARK 3 CHIRALITY : 0.048 282 REMARK 3 PLANARITY : 0.006 353 REMARK 3 DIHEDRAL : 6.280 283 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7250 11.8829 12.6428 REMARK 3 T TENSOR REMARK 3 T11: 0.1882 T22: 0.3567 REMARK 3 T33: 0.2223 T12: -0.0138 REMARK 3 T13: -0.0218 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 1.4617 L22: 1.5102 REMARK 3 L33: 1.5628 L12: 0.1817 REMARK 3 L13: 0.2389 L23: 0.4265 REMARK 3 S TENSOR REMARK 3 S11: -0.0913 S12: -0.0386 S13: -0.1367 REMARK 3 S21: -0.1477 S22: 0.2696 S23: -0.1053 REMARK 3 S31: 0.0266 S32: -0.0295 S33: -0.1696 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 206 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5050 -2.2047 18.2853 REMARK 3 T TENSOR REMARK 3 T11: 0.1809 T22: 0.2358 REMARK 3 T33: 0.2288 T12: 0.0063 REMARK 3 T13: -0.0153 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 0.5792 L22: 0.3719 REMARK 3 L33: 0.4568 L12: 0.3675 REMARK 3 L13: 0.2273 L23: 0.0629 REMARK 3 S TENSOR REMARK 3 S11: 0.0606 S12: 0.0193 S13: -0.2483 REMARK 3 S21: 0.0369 S22: -0.0254 S23: -0.0135 REMARK 3 S31: -0.0009 S32: 0.1408 S33: -0.0368 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5910 9.3193 13.9298 REMARK 3 T TENSOR REMARK 3 T11: 0.1555 T22: 0.2659 REMARK 3 T33: 0.1766 T12: 0.0050 REMARK 3 T13: 0.0024 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.7231 L22: 1.1219 REMARK 3 L33: 1.2136 L12: -0.3236 REMARK 3 L13: -0.1779 L23: 0.1375 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: 0.0541 S13: -0.0139 REMARK 3 S21: -0.0294 S22: -0.0361 S23: -0.0561 REMARK 3 S31: 0.0525 S32: 0.1531 S33: 0.0390 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8013 11.1182 24.4070 REMARK 3 T TENSOR REMARK 3 T11: 0.1557 T22: 0.2932 REMARK 3 T33: 0.1734 T12: 0.0000 REMARK 3 T13: -0.0055 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.6300 L22: 0.7565 REMARK 3 L33: 1.2415 L12: -0.0362 REMARK 3 L13: 0.1223 L23: -0.4409 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: -0.1916 S13: -0.0538 REMARK 3 S21: 0.0946 S22: 0.0590 S23: 0.0105 REMARK 3 S31: 0.0144 S32: 0.0070 S33: -0.0227 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 343 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3042 19.5673 28.7084 REMARK 3 T TENSOR REMARK 3 T11: 0.2193 T22: 0.4401 REMARK 3 T33: 0.2446 T12: 0.0281 REMARK 3 T13: 0.0151 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 3.6701 L22: 2.4117 REMARK 3 L33: 2.1228 L12: -1.7091 REMARK 3 L13: -0.5770 L23: 0.5724 REMARK 3 S TENSOR REMARK 3 S11: 0.1235 S12: -0.7244 S13: -0.1415 REMARK 3 S21: -0.0073 S22: 0.1595 S23: 0.6389 REMARK 3 S31: -0.0248 S32: -0.6872 S33: -0.1614 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 354 THROUGH 381 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1128 12.3599 24.3359 REMARK 3 T TENSOR REMARK 3 T11: 0.1770 T22: 0.2289 REMARK 3 T33: 0.1781 T12: -0.0268 REMARK 3 T13: -0.0251 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.7179 L22: 0.4979 REMARK 3 L33: 0.4878 L12: -0.4183 REMARK 3 L13: 0.0289 L23: -0.0031 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: -0.1351 S13: 0.0275 REMARK 3 S21: 0.0257 S22: -0.0298 S23: -0.0164 REMARK 3 S31: 0.0078 S32: 0.0322 S33: 0.0580 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 382 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6194 17.9027 10.4161 REMARK 3 T TENSOR REMARK 3 T11: 0.1868 T22: 0.2562 REMARK 3 T33: 0.1835 T12: -0.0195 REMARK 3 T13: -0.0013 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.5579 L22: 1.2516 REMARK 3 L33: 1.1118 L12: -0.0127 REMARK 3 L13: -0.3519 L23: -1.0485 REMARK 3 S TENSOR REMARK 3 S11: 0.0631 S12: 0.0467 S13: 0.0400 REMARK 3 S21: -0.0240 S22: 0.0465 S23: 0.0977 REMARK 3 S31: 0.0279 S32: -0.0134 S33: -0.0600 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 524 THROUGH 529 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4493 26.3710 22.5599 REMARK 3 T TENSOR REMARK 3 T11: 0.2370 T22: 0.5254 REMARK 3 T33: 0.3043 T12: -0.0215 REMARK 3 T13: -0.0017 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.5420 L22: 1.1226 REMARK 3 L33: 2.4899 L12: -0.1621 REMARK 3 L13: 0.3088 L23: -0.7063 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: -0.5099 S13: 0.6219 REMARK 3 S21: 0.0370 S22: 0.0199 S23: 0.0111 REMARK 3 S31: -0.5249 S32: -0.0911 S33: 0.0415 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 530 THROUGH 542 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7577 15.4755 7.5794 REMARK 3 T TENSOR REMARK 3 T11: 0.2105 T22: 0.3829 REMARK 3 T33: 0.2252 T12: -0.0237 REMARK 3 T13: 0.0177 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.2341 L22: 0.7087 REMARK 3 L33: 1.9453 L12: 0.1062 REMARK 3 L13: -0.5828 L23: 0.2821 REMARK 3 S TENSOR REMARK 3 S11: -0.1408 S12: 0.1822 S13: -0.2549 REMARK 3 S21: -0.3642 S22: 0.3024 S23: -0.3159 REMARK 3 S31: -0.5208 S32: 0.1244 S33: -0.1115 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RUV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1292136286. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26202 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 65.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: (10-35%) PEG 4K, 0.2 M AMMONIUM REMARK 280 ACETATE AND 0.1 M SODIUM AMMONIUM ACETATE TRIHYDRATE PH (4.1-5.6) REMARK 280 ., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 19.05800 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.25400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 19.05800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.25400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 181 REMARK 465 ASN A 182 REMARK 465 GLY A 183 REMARK 465 GLN A 184 REMARK 465 THR A 185 REMARK 465 LYS A 186 REMARK 465 PRO A 187 REMARK 465 LEU A 188 REMARK 465 GLU A 407 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 192 CE NZ REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 GLU A 217 CD OE1 OE2 REMARK 470 LYS A 244 CE NZ REMARK 470 LYS A 249 NZ REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 LYS A 262 NZ REMARK 470 ASN A 284 CG OD1 ND2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 LYS A 332 CD CE NZ REMARK 470 LYS A 337 CE NZ REMARK 470 GLU A 348 CD OE1 OE2 REMARK 470 LYS A 359 CG CD CE NZ REMARK 470 LYS A 402 CG CD CE NZ REMARK 470 LEU B 524 CG CD1 CD2 REMARK 470 ASP B 536 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 663 O HOH A 706 1.99 REMARK 500 O GLU B 538 O HOH B 601 2.11 REMARK 500 O HOH A 609 O HOH A 690 2.14 REMARK 500 O HOH A 721 O HOH A 722 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 538 CB GLU B 538 CG 0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 197 -55.11 -122.91 REMARK 500 LYS A 244 -157.86 -138.49 REMARK 500 PRO A 304 49.35 -83.42 REMARK 500 LEU A 330 42.76 -141.05 REMARK 500 PHE A 346 73.50 -110.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 ASP A 315 OD1 90.0 REMARK 620 3 HIS A 374 NE2 89.3 90.1 REMARK 620 4 AKG A 502 O5 100.5 169.2 87.5 REMARK 620 5 AKG A 502 O2 97.5 94.5 171.8 86.8 REMARK 620 6 HOH A 605 O 176.4 87.2 88.4 82.2 85.0 REMARK 620 N 1 2 3 4 5 DBREF 8RUV A 181 407 UNP Q9GZT9 EGLN1_HUMAN 181 407 DBREF 8RUV B 524 542 UNP Q99814 EPAS1_HUMAN 524 542 SEQADV 8RUV ILE A 387 UNP Q9GZT9 THR 387 ENGINEERED MUTATION SEQRES 1 A 227 PRO ASN GLY GLN THR LYS PRO LEU PRO ALA LEU LYS LEU SEQRES 2 A 227 ALA LEU GLU TYR ILE VAL PRO CYS MET ASN LYS HIS GLY SEQRES 3 A 227 ILE CYS VAL VAL ASP ASP PHE LEU GLY LYS GLU THR GLY SEQRES 4 A 227 GLN GLN ILE GLY ASP GLU VAL ARG ALA LEU HIS ASP THR SEQRES 5 A 227 GLY LYS PHE THR ASP GLY GLN LEU VAL SER GLN LYS SER SEQRES 6 A 227 ASP SER SER LYS ASP ILE ARG GLY ASP LYS ILE THR TRP SEQRES 7 A 227 ILE GLU GLY LYS GLU PRO GLY CYS GLU THR ILE GLY LEU SEQRES 8 A 227 LEU MET SER SER MET ASP ASP LEU ILE ARG HIS CYS ASN SEQRES 9 A 227 GLY LYS LEU GLY SER TYR LYS ILE ASN GLY ARG THR LYS SEQRES 10 A 227 ALA MET VAL ALA CYS TYR PRO GLY ASN GLY THR GLY TYR SEQRES 11 A 227 VAL ARG HIS VAL ASP ASN PRO ASN GLY ASP GLY ARG CYS SEQRES 12 A 227 VAL THR CYS ILE TYR TYR LEU ASN LYS ASP TRP ASP ALA SEQRES 13 A 227 LYS VAL SER GLY GLY ILE LEU ARG ILE PHE PRO GLU GLY SEQRES 14 A 227 LYS ALA GLN PHE ALA ASP ILE GLU PRO LYS PHE ASP ARG SEQRES 15 A 227 LEU LEU PHE PHE TRP SER ASP ARG ARG ASN PRO HIS GLU SEQRES 16 A 227 VAL GLN PRO ALA TYR ALA THR ARG TYR ALA ILE ILE VAL SEQRES 17 A 227 TRP TYR PHE ASP ALA ASP GLU ARG ALA ARG ALA LYS VAL SEQRES 18 A 227 LYS TYR LEU THR GLY GLU SEQRES 1 B 19 LEU ASP LEU GLU THR LEU ALA PRO TYR ILE PRO MET ASP SEQRES 2 B 19 GLY GLU ASP PHE GLN LEU HET FE A 501 1 HET AKG A 502 14 HETNAM FE FE (III) ION HETNAM AKG 2-OXOGLUTARIC ACID FORMUL 3 FE FE 3+ FORMUL 4 AKG C5 H6 O5 FORMUL 5 HOH *135(H2 O) HELIX 1 AA1 PRO A 189 TYR A 197 1 9 HELIX 2 AA2 TYR A 197 GLY A 206 1 10 HELIX 3 AA3 GLY A 215 THR A 232 1 18 HELIX 4 AA4 SER A 247 ILE A 251 5 5 HELIX 5 AA5 CYS A 266 CYS A 283 1 18 HELIX 6 AA6 ASP A 335 GLY A 340 1 6 HELIX 7 AA7 ALA A 393 THR A 405 1 13 HELIX 8 AA8 ASP B 525 LEU B 529 5 5 SHEET 1 AA1 7 ILE A 207 VAL A 210 0 SHEET 2 AA1 7 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA1 7 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA1 7 THR A 382 ASP A 392 -1 O TYR A 390 N CYS A 323 SHEET 5 AA1 7 ALA A 298 PRO A 304 -1 N MET A 299 O ILE A 387 SHEET 6 AA1 7 LYS A 255 ILE A 259 -1 N THR A 257 O VAL A 300 SHEET 7 AA1 7 THR A 236 ASP A 237 -1 N THR A 236 O ILE A 256 SHEET 1 AA2 6 ILE A 207 VAL A 210 0 SHEET 2 AA2 6 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA2 6 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA2 6 THR A 382 ASP A 392 -1 O TYR A 390 N CYS A 323 SHEET 5 AA2 6 ILE A 292 ARG A 295 -1 N GLY A 294 O PHE A 391 SHEET 6 AA2 6 PHE B 540 GLN B 541 -1 O PHE B 540 N ARG A 295 SHEET 1 AA3 4 THR A 308 HIS A 313 0 SHEET 2 AA3 4 HIS A 374 ALA A 379 -1 O HIS A 374 N HIS A 313 SHEET 3 AA3 4 LEU A 343 ILE A 345 -1 N ARG A 344 O GLU A 375 SHEET 4 AA3 4 ALA A 354 ILE A 356 -1 O ILE A 356 N LEU A 343 LINK NE2 HIS A 313 FE FE A 501 1555 1555 2.15 LINK OD1 ASP A 315 FE FE A 501 1555 1555 2.06 LINK NE2 HIS A 374 FE FE A 501 1555 1555 2.13 LINK FE FE A 501 O5 AKG A 502 1555 1555 2.05 LINK FE FE A 501 O2 AKG A 502 1555 1555 1.89 LINK FE FE A 501 O HOH A 605 1555 1555 2.25 CRYST1 38.116 42.956 130.508 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026236 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007662 0.00000 CONECT 1920 3666 CONECT 1950 3666 CONECT 2862 3666 CONECT 3666 1920 1950 2862 3669 CONECT 3666 3671 3685 CONECT 3667 3668 3669 3670 CONECT 3668 3667 CONECT 3669 3666 3667 CONECT 3670 3667 3671 3672 CONECT 3671 3666 3670 CONECT 3672 3670 3673 3677 3678 CONECT 3673 3672 3674 3679 3680 CONECT 3674 3673 3675 3676 CONECT 3675 3674 CONECT 3676 3674 CONECT 3677 3672 CONECT 3678 3672 CONECT 3679 3673 CONECT 3680 3673 CONECT 3685 3666 MASTER 440 0 2 8 17 0 0 6 1973 2 20 20 END